The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	27282	70036	4103534	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	77634	136108	4103534	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	164892	225403	4103534	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	233337	286925	4103534	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	390858	448367	4103534	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	588323	649513	4103534	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|588323_589274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|589770_590640_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|590636_591458_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|591656_592148_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|592166_593240_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|593286_594390_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|594465_595086_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|595106_595616_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|595670_595922_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|595985_597119_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|597126_597513_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|597509_600029_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|600457_600796_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|600792_601299_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|601360_602161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|602271_603213_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|603306_604842_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|606521_608372_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|608375_609209_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|609208_610150_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|610401_611373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|611514_613803_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|614109_615018_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|615072_616038_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|616112_617774_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|617845_618556_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|618704_619655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|620353_620737_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|620794_621397_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|621414_621816_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|621949_622843_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|622839_623421_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|624215_624950_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|624990_626040_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|626187_626766_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|627152_628130_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|628223_632618_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|632818_633667_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|633825_634638_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|634693_635644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|635742_636543_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|636604_636988_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|636999_638433_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|638639_638969_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|638971_639721_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|639903_640824_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|640870_641083_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|641105_641528_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|641544_642645_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|642741_644259_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|644334_645174_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|645195_646077_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|646158_647253_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|647546_648497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|648571_649513_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	654837	701028	4103534	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|654837_655863_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|655903_656143_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|656212_657802_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|657801_658350_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|658430_659003_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|659021_659933_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|660006_660975_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|661097_662171_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|662175_663996_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|664072_665023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|665111_665447_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|665580_666231_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|666252_667671_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|667740_668496_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|668464_669223_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|669233_670115_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|670131_670839_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|670841_671600_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|671809_673552_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|673544_674069_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|674108_674903_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|675070_676144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|676242_677193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|677444_677651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|677722_678334_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|678888_679140_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|679132_679822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680078_681029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|681668_682154_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|682140_683418_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|683420_684839_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|684867_685923_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|685928_686171_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|686293_686896_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|687324_688275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|688949_689201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|689263_689746_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|689747_689948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|689947_690343_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|690339_690738_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|690734_691157_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|691164_691665_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|691919_692438_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|692447_692777_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|692794_693085_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|693110_695723_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|695732_696092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|696159_696693_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|696689_697079_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|697071_701028_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	707194	761124	4103534	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|707194_708925_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|708977_709406_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|709408_710089_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|710088_710547_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|710583_711558_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|711574_712891_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|712922_713420_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|713506_714196_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|714195_715245_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|715241_716036_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|716204_716555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|716530_717088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|718217_719168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|721305_722535_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|722537_723980_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|724084_725230_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|725261_726059_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|726083_727643_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|727639_730012_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|730121_731225_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|731224_731917_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|732060_732762_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|732746_733124_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|733855_734806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|734965_735838_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|736178_736397_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|736436_737816_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|737857_739255_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|739294_740947_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|740950_741835_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|741834_742776_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|742854_744474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|744640_745456_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|745523_746093_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|746093_747044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|747698_748796_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|748829_750095_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|750252_751203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|751446_752037_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|752052_754497_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|754616_755588_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|755719_756244_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|756203_757154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|757375_759571_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|759643_760072_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|760173_761124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	812717	884730	4103534	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|812717_813668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|813766_814423_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|814570_817279_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|817288_818308_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|818304_819255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|819353_819842_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|819838_820522_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|820551_824007_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|824042_824903_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|825031_825949_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|826086_827067_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|827126_828917_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|828913_829690_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|829699_830218_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|830330_832601_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|832812_835044_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|835344_835674_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|835690_837175_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|837185_838688_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|838684_840697_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|840714_841023_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|841019_841667_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|841684_842173_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|842194_843268_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|843267_845595_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|845610_846978_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|846974_847469_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|847514_848771_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|848773_849397_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|849471_849948_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|849984_850344_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|850532_851690_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|852002_852953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|852970_853525_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|853526_853961_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|853957_854392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|854375_855179_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|855195_856011_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|856007_856823_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|856969_857671_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|857698_859657_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010931070.1|859739_860690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|860910_861579_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|861702_862809_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|862821_865935_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|865931_867425_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|867439_868111_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|868154_868649_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|868789_869437_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|869540_871589_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|871585_873598_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|873623_874958_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|875066_876059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|876125_878210_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|878234_879206_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|879334_880366_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|880369_881521_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|881691_882615_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|882692_883517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|883713_884730_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	892364	955445	4103534	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|892364_894596_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|895383_895830_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|895851_896598_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|896741_897719_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|898352_898964_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|898957_900175_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|900315_901266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|901262_901982_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|902102_904262_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|904352_904622_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|904915_905443_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|905461_906241_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|906408_907425_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|907497_907989_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|907999_909715_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|910878_911829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|911825_913658_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|914056_914716_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|914809_914956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|915064_915232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|915243_915924_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|916205_916922_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|916936_918238_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|920382_923271_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|923494_924847_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|924875_925397_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|925393_926848_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|926882_927131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|927236_928112_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|928137_929193_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|929205_929997_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|930029_931400_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|932576_933527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|933579_933801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|933960_934173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|934292_935411_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|935916_936168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|936280_937231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|937227_937611_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|937665_939480_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|939629_940457_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|940502_941483_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|941479_941692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|941688_942870_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|943033_943768_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|943769_946382_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|946517_948431_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|949046_949457_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|949554_950640_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|950738_951689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|951685_952660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|952784_953696_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|953972_954365_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|954494_955445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	974867	1115117	4103534	transposase,holin,protease,tRNA	uncultured_Mediterranean_phage(17.65%)	117	NA	NA
WP_005012067.1|974867_975818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|975898_976810_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|976870_978016_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|978035_978950_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|979021_979771_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|979770_980700_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|980943_982770_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|982852_983494_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|983716_984718_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|986554_987619_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|988416_989325_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|990812_992087_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|992240_992621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|992628_993501_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|993806_994187_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|994397_995123_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|995218_996169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|996273_997323_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|997460_998477_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|999985_1000558_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1000617_1001349_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1001400_1002318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1003125_1006305_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1006301_1007684_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1007753_1008005_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1008150_1008765_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1008951_1011066_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1011141_1011993_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1011989_1012616_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1012612_1014367_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1014659_1017365_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1017377_1019039_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1019051_1020842_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1021063_1022239_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1022281_1023232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1023330_1024071_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1024265_1026302_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1026319_1027330_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1027447_1028641_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1028670_1029444_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1029440_1030631_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1030656_1031595_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1031591_1033940_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1034094_1034736_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1034839_1035973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1036065_1036218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1036249_1036798_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1036816_1037302_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1037479_1038418_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1038420_1038738_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1038783_1039728_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1041408_1042059_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1042112_1042448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1042444_1043305_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1043321_1043603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1043676_1043940_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1044183_1045134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047654_1047978_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048012_1048573_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049581_1050529_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050630_1050924_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053596_1055303_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057271_1057661_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1060206_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069116_1070052_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070101_1071982_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072048_1072393_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077598830.1|1078521_1079097_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_019248433.1|1079035_1081783_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1081849_1083271_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1083534_1084251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1084335_1084653_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1084693_1085107_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085108_1085468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1085510_1087055_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087138_1087969_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088003_1089158_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089200_1090073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090189_1092478_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1093684_1094149_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094175_1095126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1095493_1096270_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1096314_1097172_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097193_1098210_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1098344_1099385_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1099579_1101661_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1101896_1103390_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1103620_1104415_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1104635_1105994_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1105990_1106833_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1106851_1108738_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1108679_1108931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1108975_1109608_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1109626_1110229_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1110380_1111331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1111911_1112619_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1112977_1113964_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114103_1115117_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1316135	1384622	4103534	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316135_1317086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1317854_1318493_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1319382_1319829_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1319910_1320612_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1320612_1321380_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1321376_1322615_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1322614_1323541_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1323643_1324759_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1324774_1325725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326078_1326660_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1326656_1327490_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1327700_1329014_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329190_1330072_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330091_1330943_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1330995_1332084_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332194_1333322_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1333556_1334168_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1334266_1335217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1335438_1335816_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1335963_1336461_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1336457_1336985_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337118_1337934_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1337946_1339128_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339175_1340069_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340195_1340666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1340791_1341619_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1341647_1342424_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1342420_1342696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1342710_1343175_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343186_1343888_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1343997_1344498_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1344580_1345759_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1347386_1347722_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1347909_1349358_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1349415_1349760_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1349866_1350406_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1350498_1351449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1351547_1351955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352187_1352619_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1352800_1353205_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1354441_1354765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1354767_1355655_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1355687_1356113_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356184_1356538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1356777_1357284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1357322_1358654_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1358713_1359529_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1359525_1360380_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1363442_1365986_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1367352_1369107_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369103_1371224_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371228_1373424_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1373420_1376762_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1379564_1380515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1380580_1380760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1380876_1381632_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1381618_1382764_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1383671_1384622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1445113	1500601	4103534	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445113_1446064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1447265_1447712_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1447704_1449180_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449176_1449932_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1449924_1450935_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1450924_1452601_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1452913_1453246_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1453259_1453655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1453664_1453991_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1453987_1454314_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1454240_1455263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1455259_1455610_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1455657_1456086_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456093_1457467_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1457607_1457985_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1458247_1459555_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1459615_1460446_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1460442_1460931_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1460972_1462493_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1462536_1463013_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1463816_1466414_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1466443_1467265_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1467991_1468741_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1468924_1469803_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1469900_1470617_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1470631_1471192_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1471358_1472123_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472142_1473000_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1472996_1474196_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1474235_1475570_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1475622_1477959_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478084_1478648_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1478656_1479748_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1479819_1480275_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1480275_1481070_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481066_1482248_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1482234_1482840_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1482836_1483610_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1483621_1484449_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1484610_1486974_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487041_1487761_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1487884_1488310_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1488344_1489295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1489412_1490339_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1490404_1491562_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1491542_1492010_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492157_1493108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493124_1493559_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1493548_1493899_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494095_1495250_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1495246_1496419_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1496466_1497360_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1497405_1497843_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1497902_1498592_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1498601_1499552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1499650_1500601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1793171	1841186	4103534	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930048.1|1793171_1794122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1794220_1795171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1795269_1797870_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1797976_1798981_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799089_1800430_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1800470_1801499_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1801694_1802240_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1802236_1802797_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1802895_1803846_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1803883_1804471_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1804488_1804872_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806231_1807524_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1807658_1808699_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1808796_1809813_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810080_1810728_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1810853_1811612_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1811596_1812376_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1812393_1813278_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1813274_1814054_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1814158_1814758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815046_1815799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1815917_1817318_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1817341_1817740_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1817915_1818116_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1818254_1818983_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819116_1820532_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1820535_1821399_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1821411_1822161_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1822343_1824359_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1824340_1825009_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1825783_1826734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1826882_1827221_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1827278_1827440_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1827471_1827672_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1827937_1830511_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1830581_1833131_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1835681_1836170_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1836261_1837413_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1837466_1838288_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1838326_1839556_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1839684_1840125_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1840235_1841186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1844579	1906833	4103534	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	54	NA	NA
WP_010930542.1|1844579_1847441_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1847430_1848396_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1848455_1850450_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1850548_1851499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1851495_1851870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1852131_1853340_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1853336_1855637_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1855689_1858302_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1858661_1860587_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1860583_1861480_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1861486_1862626_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1862625_1863447_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1865017_1865347_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1865729_1866986_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1867060_1867342_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1867383_1867704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1868010_1868214_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1868297_1868864_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1869209_1869410_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1869521_1870082_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1870278_1871589_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1871591_1872245_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1872349_1873654_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1873842_1876296_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1876419_1877370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1877597_1878821_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1878886_1879858_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1879924_1880326_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1880339_1881143_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1881139_1881571_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1881567_1882725_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1882746_1883523_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1885735_1886404_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1886396_1887038_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1887072_1887804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1887821_1888034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1888604_1889555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1891112_1891763_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1891891_1893094_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1893171_1895208_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1895460_1895952_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1896167_1896680_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1896697_1897909_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1897946_1898357_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1898358_1898682_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1898684_1899197_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1899326_1901189_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1901198_1901540_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1901539_1901734_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1901858_1902752_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1902748_1903699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1903823_1904633_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1904833_1905784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1905882_1906833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1934616	1975307	4103534	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1934616_1937241_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937227_1937482_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937548_1938130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938433_1938694_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938859_1939483_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939482_1940256_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1940252_1941461_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941486_1941960_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1942033_1942984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1943082_1944033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1944131_1945481_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1946246_1947002_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1947094_1949977_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1950299_1950725_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950752_1951901_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951897_1952404_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1952410_1953706_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1953764_1955051_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1955052_1955691_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1955693_1956854_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956880_1958236_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1958239_1959310_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959448_1959685_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959772_1960879_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960844_1962149_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1962167_1963067_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1963250_1964408_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1964484_1965780_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1965893_1966433_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1966710_1966923_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1966942_1968973_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1968998_1969193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1969658_1971941_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1972350_1972650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1972934_1973348_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1973307_1974258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974356_1975307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	1986511	2035907	4103534	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1986511_1987462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987458_1988733_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1988836_1990030_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1990026_1990680_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990676_1992113_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1992100_1992460_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1993274_1993415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1993432_1994383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995428_1997294_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997551_1999072_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1999159_1999810_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2000758_2002054_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2002075_2002960_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2003058_2003934_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003923_2004280_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2004410_2005385_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005514_2005694_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005791_2006316_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006326_2007163_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2007275_2007647_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007643_2008195_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2008210_2009902_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009950_2010631_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010878_2011343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011512_2012442_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012454_2013102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2013175_2014993_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2015076_2016027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2016679_2017630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017648_2017996_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2018024_2019464_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019482_2019878_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2020052_2020661_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2020673_2021492_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021443_2022418_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022446_2023508_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023504_2025721_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025734_2026193_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026350_2026695_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026851_2027757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027843_2028857_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2030836_2031853_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2031995_2033348_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2033522_2033819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2034956_2035907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2047403	2111772	4103534	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2047403_2048354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2048575_2049526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049624_2050590_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062826582.1|2050727_2051627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2054221_2055709_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055719_2056916_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056988_2058308_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058304_2059180_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2059210_2060359_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060376_2060691_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060712_2061435_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061434_2062253_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2062257_2062785_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2062790_2064047_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064405_2065545_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065622_2066495_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067365_2068316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2068275_2068911_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2069270_2070593_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2070911_2071733_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2073157_2073730_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073769_2075599_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075561_2076620_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076657_2077119_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2077203_2077950_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079440_2082671_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082737_2084069_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084321_2084696_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084798_2085977_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085987_2086578_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086688_2087495_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2087520_2088315_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089315_2090290_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090448_2090961_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2091117_2092089_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093833_2094640_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2094636_2095938_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2095888_2096653_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096766_2097537_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2097621_2098809_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098881_2099256_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2099356_2100619_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100615_2101473_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101645_2102647_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2103098_2104049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105564_2106764_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2107132_2107369_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107432_2107600_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2107713_2109519_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2109772_2110723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110821_2111772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2298240	2359588	4103534	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2298240_2299191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299307_2300027_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2300199_2301186_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2301186_2301669_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301672_2302956_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302952_2303891_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303887_2305597_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305606_2306854_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308464_2309754_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2310891_2311650_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2312326_2313070_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2313144_2313885_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2314080_2314917_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314967_2315738_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315787_2316840_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316836_2317463_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317459_2318494_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318672_2319689_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319787_2320738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323478_2324768_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324886_2325324_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325367_2326576_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326722_2327187_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2327210_2328161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2329145_2329919_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329915_2330914_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330998_2331775_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331930_2333535_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333915_2335040_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2335166_2335790_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335786_2337688_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337736_2338531_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338543_2339545_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339541_2340048_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2340040_2340889_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340986_2341529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341572_2342523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342678_2343005_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2343001_2343286_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343282_2343762_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343758_2345387_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345383_2345728_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345727_2348661_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349819_2350770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350868_2351165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2351271_2352189_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2352193_2352907_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352920_2353892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355611_2355992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355995_2357183_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2357606_2358344_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358637_2359588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2380379	2451533	4103534	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2380379_2381330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381882_2383508_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383557_2384592_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384594_2385941_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2385937_2387452_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387442_2388453_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388926_2389868_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389876_2390845_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392384_2393353_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393530_2394520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394566_2395325_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395514_2396252_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396350_2397301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397485_2398268_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2398261_2398963_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2399202_2399805_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2401131_2402082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2402078_2403635_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403627_2404401_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404459_2405410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405491_2406667_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406680_2408738_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408734_2409760_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409771_2411061_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2411083_2412181_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2412177_2413068_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2413064_2415149_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2415180_2416350_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416391_2417132_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2417131_2417902_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2418226_2418394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2418757_2419543_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419569_2421654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421821_2423777_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2424100_2424601_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424699_2426226_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426363_2427251_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2427265_2428219_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2428270_2430361_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430376_2430763_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433456_2434260_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435553_2436456_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436520_2437297_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437618_2438668_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438791_2440462_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440466_2441261_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441359_2442310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442329_2443235_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443312_2444011_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2444170_2445115_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2445124_2446612_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446611_2447679_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447742_2449155_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449340_2450561_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450582_2451533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2535734	2598035	4103534	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2535734_2536685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536783_2537554_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537550_2538222_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2538218_2538860_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538872_2539793_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539953_2541114_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2541155_2542106_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2542770_2542971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2543093_2544788_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544909_2545179_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545294_2545693_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545703_2546660_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546796_2547342_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547362_2549312_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549699_2550476_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550481_2550874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551295_2552246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2552242_2553340_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553371_2554322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2556103_2557345_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557356_2558130_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2558156_2559107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2559205_2559988_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2560076_2561303_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2562028_2563414_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563432_2564038_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2564034_2565891_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565887_2566688_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566702_2567896_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567963_2568938_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2569060_2570284_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570394_2572599_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572893_2573553_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573560_2573767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2574105_2574861_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2574876_2575038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2575131_2575647_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575919_2576237_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2576181_2576826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576951_2578307_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578353_2579694_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579795_2580428_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2580427_2582788_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582829_2583789_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583775_2584462_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2584458_2584791_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2584906_2585857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2585853_2587920_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2587919_2588192_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2588886_2588976_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2588975_2590760_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2590783_2592949_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2592959_2593559_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596380_2597076_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2597084_2598035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2684152	2724821	4103534	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684152_2685103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685213_2685396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685495_2686092_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2686275_2687367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687866_2688277_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2688335_2688677_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2688682_2691100_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691112_2692135_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692209_2692569_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692584_2692782_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693117_2694068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2694262_2694712_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694708_2695659_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695769_2697218_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2697332_2697614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697717_2698668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698912_2699626_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699748_2699976_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2700270_2700909_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701017_2702052_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702048_2702999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703414_2703939_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703942_2704212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704410_2705472_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705555_2707190_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707191_2707995_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708023_2708983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708986_2710501_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710537_2711542_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711973_2712444_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712479_2713091_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713121_2713745_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713825_2715358_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2715392_2716634_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716677_2717709_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717705_2718875_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2718868_2719549_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2719710_2720553_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720715_2721687_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721858_2722737_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722759_2723830_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723870_2724821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2780287	2853157	4103534	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2780287_2780704_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780814_2781447_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781475_2781919_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781940_2783032_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2783086_2783887_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784022_2784643_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2784782_2785256_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786395_2787346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787342_2795004_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795244_2799291_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799603_2800185_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800181_2801480_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801559_2802588_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802848_2803799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803795_2804746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805062_2805668_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2805721_2807035_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807109_2807580_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807579_2808368_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808378_2810031_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810118_2811069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812230_2812737_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812733_2813498_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813513_2813798_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813862_2814852_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815023_2815953_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815924_2816611_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816644_2817190_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2817234_2818500_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818496_2819399_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820580_2821525_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821619_2823137_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823178_2824807_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824914_2825796_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828908_2829283_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829307_2829646_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829689_2831324_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831362_2832709_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2832816_2834238_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834307_2834892_-	nitroreductase	NA	NA	NA	NA	NA
WP_010929591.1|2834994_2835945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836079_2837186_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837196_2838294_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838438_2839644_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839650_2840172_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2840168_2840660_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840656_2840908_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840888_2841374_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841509_2844971_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844988_2845873_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845882_2846314_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846560_2847064_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847141_2848542_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848616_2849492_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849488_2850496_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850963_2851269_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851359_2851950_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852140_2853157_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2856300	2923111	4103534	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856300_2857251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857349_2858300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858296_2859091_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859122_2859827_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859901_2860702_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860698_2861106_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861102_2861744_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861736_2863737_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864997_2866329_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866325_2867276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868982_2869249_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869956_2870295_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874848_2875451_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875547_2876837_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876894_2877626_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877622_2878426_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878422_2879511_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879507_2880437_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880585_2881731_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881752_2882703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883033_2886855_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887011_2887680_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887684_2889358_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889376_2890696_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2890700_2893016_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893071_2895240_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2895236_2900426_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900515_2900830_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901057_2901303_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901397_2901916_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902015_2903221_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903336_2904734_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904850_2905429_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905501_2906893_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907060_2908011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908291_2908912_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908908_2909322_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909318_2910362_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910417_2910606_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910615_2911380_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911470_2912127_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912218_2912977_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913002_2914604_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914804_2915809_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915909_2916173_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916290_2917067_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917657_2918608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920991_2922104_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922160_2923111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	2953497	2997188	4103534	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2953497_2954448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2954568_2955465_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957742_2959968_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960132_2961221_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961177_2961831_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961878_2962676_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963207_2964158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2964232_2965387_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965443_2966394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2966492_2966798_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966826_2967261_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2967262_2968507_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968503_2969214_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969228_2970140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970502_2970907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970903_2971362_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2971368_2972277_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2972273_2973140_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973126_2973954_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973964_2975092_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976169_2977408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977449_2978712_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978718_2979471_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979522_2979708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979983_2980448_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980479_2981139_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2981283_2983392_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983388_2984339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984442_2985063_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2985154_2985907_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987041_2988166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988211_2988580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988821_2989772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990807_2991350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991735_2992686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2992682_2993648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2993717_2994554_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995066_2996176_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2996237_2997188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	3377134	3430875	4103534	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377134_3378085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378489_3379134_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379158_3379743_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379843_3380461_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380463_3382179_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382175_3382484_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3382500_3383118_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383162_3383465_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383565_3384420_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384607_3384832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385001_3385274_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385691_3386099_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386468_3387263_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387363_3388599_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388667_3389684_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3389695_3391072_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391068_3392265_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3392261_3393800_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393796_3395056_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396996_3397947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3398713_3399808_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399800_3401135_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401088_3401772_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401797_3402961_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3402957_3403959_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403958_3404831_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404827_3405577_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405573_3406365_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406361_3407501_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407776_3408562_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408595_3409378_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409381_3409771_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3410910_3411774_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3411809_3412898_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412894_3413845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414198_3417177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418103_3418982_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420930_3421881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421877_3422345_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422387_3423158_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3423178_3423979_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423989_3425399_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425493_3426279_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426518_3427535_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427642_3428035_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428172_3428853_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428857_3429829_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429924_3430875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	3437030	3496330	4103534	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3437030_3438794_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438905_3439784_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439896_3440712_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440715_3440967_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441051_3442068_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442398_3442620_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444980_3445898_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446395_3447604_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447683_3449255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449372_3450308_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450496_3451441_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452008_3457726_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457731_3458859_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458914_3459541_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3459812_3460829_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460924_3461635_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461631_3462621_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3462716_3464348_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464350_3465088_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3465243_3466116_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466384_3467605_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467601_3468261_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468332_3468965_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468994_3469513_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469523_3470633_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470679_3471534_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471535_3472438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473660_3474611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476367_3477357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3477353_3477512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3477532_3478321_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478317_3479349_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479367_3479931_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479986_3481507_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481770_3482475_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482482_3483220_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483325_3483700_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483742_3485032_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485028_3486198_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486194_3487034_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487093_3488029_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488041_3488992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489090_3490053_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490084_3490444_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490568_3491471_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491472_3493245_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3493279_3494056_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495379_3496330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	3511268	3570390	4103534	transposase,tRNA	Planktothrix_phage(12.5%)	48	NA	NA
WP_010929584.1|3511268_3512219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512347_3513481_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513524_3514430_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514432_3516133_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516129_3517050_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517057_3518035_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518093_3519128_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3521102_3521339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3521465_3522329_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522417_3523239_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3523318_3524056_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3524052_3525045_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3525158_3525821_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525865_3527014_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3529337_3530288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530628_3531579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531677_3532628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532924_3533422_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533464_3535240_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3535247_3536114_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536120_3536855_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538024_3538819_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539108_3539699_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539732_3541061_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541135_3542281_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542392_3543391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543353_3543788_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545304_3546189_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546185_3547391_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547387_3548248_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3548360_3550151_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550191_3550857_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550857_3551166_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551331_3552618_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_005012067.1|3554051_3555002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3555100_3556051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3558002_3559217_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559322_3560312_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560308_3560917_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560929_3561559_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561555_3562176_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3562207_3562999_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563850_3564306_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3564324_3565251_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565304_3566591_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567521_3568394_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568390_3569341_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569439_3570390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011195	Bordetella pertussis strain H806 chromosome, complete genome	4103534	4025705	4079137	4103534	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4025705_4026656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026825_4028052_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028251_4029118_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029110_4030073_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030173_4031124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031222_4032173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032271_4033222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033218_4034712_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034708_4037816_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037812_4040881_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040877_4042128_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042308_4043070_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043102_4043753_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043755_4044595_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044835_4045579_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045661_4046009_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046106_4046949_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046993_4047881_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047907_4048096_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048193_4049651_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049637_4051164_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051182_4051650_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051649_4052672_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052792_4053512_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053587_4054688_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054689_4055880_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055999_4057016_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057334_4058006_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058002_4058911_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059122_4059770_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063621_4064698_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064708_4065518_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065607_4066381_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066563_4067514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4067402_4068425_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4068414_4069569_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4069608_4071021_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071145_4072012_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072013_4072838_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4072834_4073596_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4073676_4074363_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4074536_4075544_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4075540_4076320_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4076377_4077640_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078186_4079137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
