The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	27282	70036	4102311	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	232666	307010	4102311	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	489374	607269	4102311	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489374_490325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490423_491374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492096_493371_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493457_494540_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494550_495363_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495399_495726_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495730_496291_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496531_497524_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497542_498538_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498553_499930_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499922_502304_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502320_502710_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502836_503067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503171_504122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504220_505171_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505167_506040_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506970_508257_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508310_509237_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509255_509711_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510562_511354_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511385_512006_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512002_512632_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512644_513253_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513249_514239_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514344_515559_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517510_518461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519894_521181_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521346_521655_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521655_522321_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522361_524152_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524264_525125_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525121_526327_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526323_527208_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528724_529159_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529121_530120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530231_531377_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531451_532780_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532813_533404_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533693_534488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535657_536392_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536398_537265_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537272_539048_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539090_539588_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539884_540835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540933_541884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542224_543175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545498_546647_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546691_547354_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547467_548460_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548456_549194_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549273_550095_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550183_551047_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551173_551410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553384_554419_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554477_555455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555462_556383_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556379_558080_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558082_558988_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559031_560165_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560293_561244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561342_563412_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563454_565557_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565863_566940_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567015_567900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568082_568505_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568514_569915_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569957_570863_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570961_572503_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572537_573077_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573089_573560_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573697_573940_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574056_574938_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575010_575331_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576182_577133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578456_579233_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579267_581040_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581041_581944_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582068_582428_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582459_583422_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583520_584471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584483_585419_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585478_586318_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586314_587484_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587480_588770_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588812_589187_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589292_590030_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590037_590742_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591005_592526_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592581_593145_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593163_594195_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594191_594980_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|595000_595159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595155_596145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597901_598852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600074_600977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600978_601833_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601879_602989_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602999_603518_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603547_604180_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604251_604911_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604907_606128_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606396_607269_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	611683	675516	4102311	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611683_612700_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612971_613598_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613653_614781_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614786_620504_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621071_622016_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622204_623140_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623257_624829_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624908_626117_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626614_627532_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629892_630114_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630444_631461_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631545_631797_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631800_632616_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632728_633607_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633718_635482_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635597_636938_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638007_639432_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639431_640133_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641637_642588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642683_643655_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643659_644340_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644477_644870_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644977_645994_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646233_647019_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647113_648523_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648533_649334_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649354_650125_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650167_650635_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650631_651582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653530_654409_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655335_658314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658667_659618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659614_660703_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660738_661602_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662741_663131_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663134_663917_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663950_664736_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665011_666151_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666147_666939_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666935_667685_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667681_668554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668553_669555_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669551_670715_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670740_671424_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671377_672712_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672704_673799_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674565_675516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	694427	771736	4102311	transposase,integrase,protease,tRNA	Bacillus_phage(20.0%)	57	741564:741582	761452:761470
WP_023995489.1|694427_695378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695476_696952_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698539_699427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699429_700371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700416_701982_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703759_705085_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705267_706725_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706688_707186_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707216_708188_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708240_708678_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708801_709470_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710198_711302_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711404_712682_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712693_713719_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713720_715091_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715091_716228_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716274_718200_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718196_719318_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719314_720469_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720465_721596_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721603_723169_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723175_724558_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724836_725448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725539_726955_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726972_727683_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727679_729002_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729081_731043_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731168_732482_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732590_733889_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734071_734980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734989_735199_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735210_736890_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736991_737945_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738035_738863_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738861_740748_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740744_741344_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741392_742292_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741564:741582	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742500_743451_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743573_744188_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744316_744913_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744909_745692_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745764_746856_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747135_748263_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748604_749651_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749798_752918_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752919_755871_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755886_757098_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757281_758232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758248_758743_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758746_759004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759547_760459_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760540_760825_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761608_762559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761452:761470	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762977_765542_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765586_767440_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767772_769344_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770785_771736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1017671	1119015	4102311	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1017671_1018787_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1018887_1019706_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1019803_1020415_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1020574_1021951_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1022013_1022472_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1022556_1023252_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1023313_1023595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1024157_1024910_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1024954_1026031_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1026027_1026978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1027080_1027743_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1027837_1028008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1028360_1029362_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1029364_1030561_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1030581_1031385_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1031465_1031762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1031792_1032356_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1032396_1033254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1033261_1034011_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1034032_1034905_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1034933_1035713_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1035746_1036544_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1039198_1039591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1039584_1040445_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1040448_1041411_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1042187_1042877_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1043737_1044688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1045037_1045907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1045977_1046673_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1046662_1047172_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1047168_1048389_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1048336_1049239_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1050125_1051412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1051450_1052824_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1052862_1053564_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1053862_1054852_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1054952_1055414_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1055429_1055978_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1056119_1057595_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1057700_1058792_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1058795_1059578_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1059587_1060376_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1061501_1061936_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1061932_1062943_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1062986_1063913_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1064199_1064568_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1064784_1065735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1065779_1068206_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1068254_1068947_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1069019_1070219_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1070236_1071142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1071257_1072187_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1072212_1073559_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1073586_1074336_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1074349_1075132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1075324_1076275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1076336_1077446_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1077958_1078795_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1078864_1079830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1079826_1080777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1081162_1081705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1082740_1083691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1083932_1084301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1084346_1085471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1086605_1087358_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1087449_1088070_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1088173_1089124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1089120_1091229_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1091373_1092033_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1092064_1092529_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1092804_1092990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1093041_1093794_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1093800_1095063_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1095104_1096343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1097420_1098548_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1098558_1099386_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1099372_1100239_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1101605_1102010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1102372_1103284_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1103298_1104009_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1104005_1105250_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1105251_1105686_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1105714_1106020_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1106118_1107069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1107125_1108280_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1108354_1109305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1109836_1110634_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1110681_1111335_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1111291_1112380_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1112544_1114770_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1117047_1117944_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1118064_1119015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1149401	1220373	4102311	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1149401_1150352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1150408_1151521_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1153904_1154855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1155445_1156222_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1156339_1156603_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1156703_1157708_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1157908_1159510_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1159535_1160294_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1160385_1161042_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1161132_1161897_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1161906_1162095_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1162150_1163194_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1163190_1163604_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1163600_1164221_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1164501_1165452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1165619_1167011_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1167083_1167662_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1167778_1169176_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1169291_1170497_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1170596_1171115_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1171209_1171455_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1171682_1171997_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1172086_1177276_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1177272_1179441_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1179496_1181812_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1181816_1183136_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1183154_1184828_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1184832_1185501_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1185657_1189479_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1189809_1190760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1190781_1191927_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1192075_1193005_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1193001_1194090_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1194086_1194890_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1194886_1195618_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1195675_1196965_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1197061_1197664_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1202218_1202557_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1203264_1203531_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1205237_1206188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1206184_1207516_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1208776_1210777_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1210769_1211411_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1211407_1211815_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1211811_1212612_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1212686_1213391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1213422_1214217_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1214213_1215164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1215262_1216213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1216311_1216746_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1216828_1219165_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1219356_1220373_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1267767	1348642	4102311	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1267767_1268718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1268714_1269665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1269925_1270954_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1271033_1272332_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1272328_1272910_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1273222_1277269_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1277509_1285171_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1285167_1286118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1287257_1287731_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1287870_1288491_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1288626_1289427_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1289481_1290573_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1290594_1291038_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1291066_1291699_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1291809_1292226_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1292218_1292911_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1293017_1293392_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1293468_1294278_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1294373_1295318_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1295356_1296328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1296418_1296856_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1296914_1297796_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1298799_1299660_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1299692_1301075_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1301071_1302091_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1302463_1302958_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1302965_1303706_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1303786_1305391_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1305430_1306219_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1307421_1308510_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1309390_1310203_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1310215_1310524_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1310641_1312372_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1312373_1313519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1313648_1314317_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1314438_1314906_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1315041_1316424_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1316420_1317545_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1317541_1320178_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1320593_1321544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1325290_1325902_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1326124_1327585_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1327681_1329274_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1329627_1329885_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1329886_1331227_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1331322_1332012_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1332024_1333455_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1335179_1336001_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1336011_1337583_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1337611_1338589_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1338615_1339419_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1339415_1340210_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1340217_1341453_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1341445_1341880_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1342629_1343580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1344201_1345929_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1346040_1347399_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1347691_1348642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1468036	1521216	4102311	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1468036_1468987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1469153_1469507_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1469519_1469882_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1469923_1470349_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1470551_1471808_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1472006_1472987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1473136_1474378_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1474476_1475427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1475435_1476131_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1478952_1479552_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1479562_1481728_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1481751_1483536_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1483535_1483625_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1484319_1484592_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1484591_1486658_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1486654_1487605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1487720_1488053_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1488049_1488736_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1488722_1489682_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1489723_1492084_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1492083_1492716_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1492817_1494158_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1494204_1495560_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1495685_1496330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1496274_1496592_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1496864_1497380_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1497473_1497635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1497650_1498406_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1498744_1498951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1498958_1499618_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1499912_1502117_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1502227_1503451_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1503573_1504548_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1504615_1505809_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1505823_1506624_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1506620_1508477_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1508473_1509079_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1509097_1510483_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1511208_1512435_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1512523_1513306_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1513404_1514355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1514381_1515155_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1515166_1516408_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1518189_1519140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1519171_1520269_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1520265_1521216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1563065	1631151	4102311	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1563065_1563554_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1563671_1564250_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1564355_1564724_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1564822_1565773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1565779_1566892_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1567578_1568781_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1568816_1568963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1568984_1571645_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1571657_1575062_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1575729_1577955_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1578001_1578328_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1578378_1578987_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1579085_1580036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1580105_1580870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1580866_1581466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1581569_1582421_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1582480_1583107_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1583103_1584054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1584152_1585265_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1585254_1586256_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1586361_1587873_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1587869_1589174_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1589285_1589846_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1590113_1590668_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1591123_1591339_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1591593_1594191_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1594187_1595375_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1596033_1596648_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1596736_1597864_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1597875_1598781_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1599673_1600624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1600805_1601558_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1601626_1602286_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1602282_1603011_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1603023_1605303_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1605327_1605531_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1605572_1606205_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1606340_1607258_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1607254_1607968_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1608205_1608976_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1608980_1609580_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1609824_1611315_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1611373_1611658_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1611795_1611951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1612223_1613150_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1613286_1614027_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1614193_1615570_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1615751_1616657_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1618308_1620111_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1620237_1620879_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1620977_1621928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1621949_1623170_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1623355_1624768_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1624831_1625899_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1625898_1627386_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1627395_1628340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1628499_1629198_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1629275_1630181_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1630200_1631151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1667100	1722691	4102311	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1667100_1668051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1668109_1668883_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1668875_1670432_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1670428_1671379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1672705_1673308_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1673547_1674249_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1674242_1675025_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1675209_1676160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1676258_1676996_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1677185_1677944_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1677990_1678980_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1679157_1680126_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1681665_1682634_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1682642_1683584_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1684057_1685068_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1685058_1686573_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1686569_1687916_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1687918_1688953_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1689002_1690628_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1691180_1692131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1692235_1693183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1693236_1695051_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1695043_1695718_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1695847_1698922_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1698935_1699235_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1699549_1700173_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1700416_1701286_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1701263_1702208_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1702293_1703220_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1703332_1704112_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1704102_1705299_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1705329_1706280_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1706501_1707191_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1707255_1708011_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1708062_1709055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1709064_1710018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1710133_1711096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1712497_1712926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1712922_1713873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1714166_1714904_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1715327_1716515_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1716518_1716899_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1718618_1719590_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1719603_1720317_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1720321_1721239_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1721345_1721642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1721740_1722691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1744349	1836320	4102311	transposase,tRNA	Moraxella_phage(25.0%)	60	NA	NA
WP_005012067.1|1744349_1745300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1745398_1746349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1746372_1746837_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1746983_1748192_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1748235_1748673_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1748791_1750081_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1752821_1753772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1753870_1754887_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1755065_1756100_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1756096_1756723_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1756719_1757772_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1757821_1758592_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1758642_1759479_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1759674_1760415_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1760489_1761233_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1761909_1762668_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1763805_1765095_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1766705_1767953_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1767962_1769672_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1769668_1770607_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1770603_1771887_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1771890_1772373_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1772373_1773360_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1773532_1774252_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1774368_1775319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1778504_1779854_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1779911_1780706_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1780839_1781715_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1781758_1785475_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1785483_1786113_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1786539_1797312_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1798074_1798809_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1798871_1801493_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1801473_1802604_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1802596_1804351_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1805668_1806169_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1806175_1807150_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1808706_1809198_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1809211_1810177_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1810197_1810899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1812073_1812586_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1812664_1816288_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1816301_1817333_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_003809983.1|1818492_1819326_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1819339_1820098_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1820259_1821252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1821469_1822246_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1822353_1823136_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1823262_1824849_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1824873_1825737_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1825944_1826721_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1826713_1827223_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1827351_1828035_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1828274_1829735_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1829754_1830399_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1830435_1831401_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1831499_1832450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1832579_1833545_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1833644_1834910_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1835303_1836320_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	1956505	2026157	4102311	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1956505_1959163_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1959240_1960443_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1960439_1960952_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1961074_1961512_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1961788_1962739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1962837_1963788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1964041_1965847_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1965960_1966128_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1966191_1966428_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1966796_1967996_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1969511_1970462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1970913_1971915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1972087_1972945_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1972941_1974204_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1974304_1974679_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1974751_1975939_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1976023_1976794_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1976907_1977672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1977622_1978924_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1978920_1979727_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1981471_1982443_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1982599_1983112_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1983270_1984245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1985245_1986040_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1986065_1986872_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1986982_1987573_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1987583_1988762_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1988864_1989239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1989491_1990823_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1990889_1994120_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1995610_1996357_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1996441_1996903_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1996940_1997999_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1997961_1999791_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1999830_2000403_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2001827_2002649_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2002967_2004290_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2004649_2005285_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2005244_2006195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2007065_2007938_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2008015_2009155_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2009513_2010770_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2010775_2011303_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2011307_2012126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2012125_2012848_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2012869_2013184_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2013201_2014350_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2014380_2015256_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2015252_2016572_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2016644_2017841_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2017851_2019339_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2021933_2022833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2022970_2023936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2024034_2024985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2025206_2026157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2037653	2087049	4102311	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2037653_2038604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2039741_2040038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2040212_2041565_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2041707_2042724_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2044703_2045717_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2045803_2046709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2046865_2047210_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2047367_2047826_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2047839_2050056_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2050052_2051114_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2051142_2052117_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2052068_2052887_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2052899_2053508_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2053682_2054078_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2054096_2055536_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2055564_2055912_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2055930_2056881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2057533_2058484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2058567_2060385_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2060458_2061106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2061118_2062048_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2062217_2062682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2062929_2063610_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2063658_2065350_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2065365_2065917_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2065913_2066285_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2066397_2067234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2067244_2067769_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2067866_2068046_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2068175_2069150_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2069280_2069637_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2069626_2070502_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2070600_2071485_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2071506_2072802_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2073750_2074401_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2074488_2076009_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2076266_2078132_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2079177_2080128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2080145_2080286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2081100_2081460_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2081447_2082884_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2082880_2083534_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2083530_2084724_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2084827_2086102_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2086098_2087049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2098253	2138944	4102311	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2098253_2099204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2099302_2100253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2100212_2100626_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2100910_2101210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2101619_2103902_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2104367_2104562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2104587_2106618_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2106637_2106850_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2107127_2107667_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2107780_2109076_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2109152_2110310_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2110493_2111393_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2111411_2112716_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2112681_2113788_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2113875_2114112_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2114250_2115321_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2115324_2116680_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2116706_2117867_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2117869_2118508_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2118509_2119796_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2119854_2121150_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2121156_2121663_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2121659_2122808_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2122835_2123261_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2123583_2126466_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2126558_2127314_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2128079_2129429_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2129527_2130478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2130576_2131527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2131600_2132074_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2132099_2133308_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2133304_2134078_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2134077_2134701_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2134866_2135127_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2135430_2136012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2136078_2136333_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2136319_2138944_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2166727	2232276	4102311	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2166727_2167678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2167878_2168688_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2168812_2169763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2169759_2170653_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2170777_2170972_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2170971_2171313_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2171322_2173185_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2173314_2173827_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2173829_2174153_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2174154_2174565_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2174602_2175814_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2175831_2176344_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2176559_2177051_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2177303_2179340_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2179417_2180620_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2180748_2181399_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2182956_2183907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2184477_2184690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2184707_2185439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2185473_2186115_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2186107_2186776_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2188988_2189765_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2189786_2190944_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2190940_2191372_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2191368_2192172_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2192185_2192587_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2192653_2193625_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2193690_2194914_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2195141_2196092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2196215_2198669_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2198857_2200162_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2200266_2200920_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2200922_2202233_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2202429_2202990_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2203101_2203302_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2203647_2204214_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2204297_2204501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2204807_2205128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2205169_2205451_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2205525_2206782_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2207164_2207494_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2209064_2209886_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2209885_2211025_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2211031_2211928_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2211924_2213850_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2214209_2216822_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2216874_2219175_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2219171_2220380_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2220641_2221016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2221012_2221963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2222061_2224056_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2224115_2225081_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2225070_2227932_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2227934_2228441_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2228545_2229754_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2229755_2230694_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2230855_2231329_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2231325_2232276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2317404	2380982	4102311	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2317404_2318355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2318656_2319133_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2319756_2321394_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2321424_2322738_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2322871_2323189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2323289_2324612_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2324608_2325559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2325657_2326608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2327137_2328160_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2328188_2329019_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2329035_2330733_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2330797_2331874_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2332033_2332897_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2332927_2333497_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2333513_2334365_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2335422_2336304_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2336378_2337368_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2337430_2338381_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2338443_2339301_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2339360_2339849_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2341421_2342612_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2342608_2344195_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2344213_2345281_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2345385_2346930_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2347349_2348924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2349031_2350048_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2350044_2350884_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2350888_2352526_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2352522_2353473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2353615_2354890_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2354919_2355210_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2355282_2356296_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2356315_2357578_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2357580_2358504_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2358500_2359994_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2360004_2360937_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2361118_2362444_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2362478_2363822_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2363894_2365415_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2365569_2366301_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2366368_2367709_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2367724_2368636_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2368626_2369220_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2369281_2369668_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2369679_2370150_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2370161_2370785_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2370805_2373553_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2380031_2380982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2525923	2584167	4102311	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2525923_2526874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2527353_2528010_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2528024_2529692_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2529694_2530324_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2530535_2531630_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2531774_2532587_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2532590_2534294_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2534344_2535475_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2535661_2536738_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2536819_2537470_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2537484_2538888_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2539171_2539990_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2539986_2540691_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2541590_2542706_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2542739_2543114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2543136_2544294_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2544306_2544540_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2545174_2548144_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2548158_2548368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2548519_2549149_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2549145_2551236_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2551259_2551940_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2551936_2552497_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2552503_2553601_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2553753_2554347_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2554343_2555636_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2555649_2556192_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2556201_2557038_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2557071_2558133_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2558174_2559227_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2559242_2559545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2559686_2560637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2560815_2562510_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2562506_2563592_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2563639_2564539_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2564549_2565194_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2566215_2569458_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2569468_2570623_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2570849_2571812_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2571910_2572861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2572959_2573910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2573919_2574609_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2574668_2575106_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2575151_2576045_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2576092_2577265_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2577261_2578416_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2578612_2578963_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2578952_2579387_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2579403_2580354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2580501_2580969_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2580949_2582107_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2582172_2583099_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2583216_2584167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2626447	2692947	4102311	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2626447_2627398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2627767_2628340_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2628342_2629353_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2629345_2629846_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2629856_2630198_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2630209_2631001_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2631017_2631287_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2631309_2632098_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2632144_2633161_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2633377_2634820_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2634998_2636618_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2636738_2638559_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2638637_2640170_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2640203_2641850_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2641919_2642942_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2642959_2644093_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2644095_2644785_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2644784_2645570_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2645613_2646378_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2646416_2647838_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2647903_2648608_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2648655_2649075_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2649087_2649495_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2649678_2650389_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2650515_2650806_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2650823_2651306_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2655811_2656966_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2657271_2658288_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2658534_2659323_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2659389_2660070_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2660066_2660837_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2660935_2661886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2661941_2662859_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2662869_2664048_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2664067_2665063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2666651_2667260_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2667247_2668288_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2668305_2669268_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2669264_2670458_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2670454_2671252_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2671277_2672264_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2672282_2674322_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2674523_2675204_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2675217_2676129_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2676125_2676704_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2676842_2677748_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2677755_2681175_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2681162_2683763_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2684718_2685351_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2685744_2686503_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2686499_2687702_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2687889_2688840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2689747_2690893_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2690879_2691635_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2691751_2691931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2691996_2692947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2891286	2964611	4102311	tRNA,transposase,protease	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2891286_2892642_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2894120_2894843_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2894897_2895881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2896010_2896961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2896957_2897860_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2897947_2898706_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2898718_2899810_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2899907_2901335_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2901564_2902779_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2902824_2905695_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2908105_2908594_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2908719_2911416_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2911570_2913853_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2914026_2914650_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2914748_2915699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2915745_2916300_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2916367_2917213_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2917282_2918251_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2918250_2919114_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2921946_2925873_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2926608_2929839_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2930120_2930948_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2930981_2931677_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2931669_2932950_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2932959_2933937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2933918_2935619_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2935721_2936825_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2936855_2937611_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2937617_2939138_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2939180_2939483_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2939479_2940112_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2940190_2942056_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2942052_2942847_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2942875_2943991_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2944895_2945774_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2945773_2946598_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2946765_2947716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2947928_2950778_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2950759_2951488_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2951628_2953092_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2953088_2953460_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2953477_2954791_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2954827_2955286_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2955398_2956349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2956345_2957359_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2957498_2958485_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2958843_2959551_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2960131_2961082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2961233_2961836_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2961854_2962487_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2962531_2962783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2962724_2964611_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	2976336	3025007	4102311	transposase,holin,tRNA	uncultured_Mediterranean_phage(60.0%)	42	NA	NA
WP_005013747.1|2976336_2977287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2977313_2977778_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2978984_2981273_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2981389_2982262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2982304_2983459_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2983493_2984324_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2984407_2985952_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2985994_2986354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2986355_2986769_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2986809_2987127_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2987211_2987928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2988191_2989613_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2989679_2992427_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2992759_2993776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2994111_2994753_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2994843_2996280_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2996437_2997511_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2997507_2998644_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2998788_2999133_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2999199_3001080_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3001129_3002065_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3002397_3003414_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3004351_3005779_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3005775_3006798_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3006787_3007261_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3007401_3008289_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3008285_3009929_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3009925_3010975_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3011763_3012780_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3012879_3013512_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3013520_3013910_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3013962_3015015_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3015878_3016643_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3016716_3017217_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3017231_3019289_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3019315_3019609_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3019710_3020658_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3020670_3021546_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3021666_3022227_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3022261_3022585_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3023020_3023758_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3024056_3025007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3033217	3095372	4102311	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3033217_3034351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3034454_3035096_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3035250_3037599_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3037595_3038534_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3038559_3039750_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3039746_3040520_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3040549_3041743_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3041860_3042871_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3042888_3044925_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3045119_3045860_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3045958_3046909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3047007_3047958_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3048000_3049176_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3049397_3051188_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3051200_3052862_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3052874_3055580_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3055872_3057627_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3057623_3058250_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3058246_3059098_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3059173_3061288_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3061474_3062089_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3062234_3062486_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3062555_3063938_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3063934_3067114_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3067921_3068839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3068890_3069622_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3069681_3070254_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3071762_3072779_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3072916_3073966_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3074070_3075021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3075116_3075842_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3076052_3076433_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3076738_3077611_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3077618_3077999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3078152_3079427_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3080914_3081823_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3082620_3083685_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3085521_3086523_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3086745_3087387_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3087469_3089296_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3089539_3090469_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3090468_3091218_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3091289_3092204_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3092223_3093369_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3093429_3094341_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3094421_3095372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3114794	3177875	4102311	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|3114794_3115745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3115874_3116267_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3116543_3117455_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3117579_3118554_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3118550_3119501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3119599_3120685_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3120782_3121193_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3121808_3123722_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3123857_3126470_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3126471_3127206_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3127369_3128551_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3128547_3128760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3128756_3129737_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3129782_3130610_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3130759_3132574_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3132628_3133012_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3133008_3133959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3134071_3134323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3134828_3135947_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3136066_3136279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3136438_3136660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3136712_3137663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3138839_3140210_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3140242_3141034_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3141046_3142102_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3142127_3143003_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3143108_3143357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3143391_3144846_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3144842_3145364_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3145392_3146745_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3146968_3149857_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3152001_3153303_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3153317_3154034_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3154315_3154996_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3155007_3155175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3155283_3155430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3155523_3156183_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3156581_3158414_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3158410_3159361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3160524_3162240_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3162250_3162742_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3162814_3163831_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3163998_3164778_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3164796_3165324_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3165617_3165887_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3165977_3168137_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3168257_3168977_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3168973_3169924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3170064_3171282_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3171275_3171887_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3172520_3173498_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3173641_3174388_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3174409_3174856_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3175643_3177875_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
>prophage 26
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3185509	3257522	4102311	transposase,holin	Leptospira_phage(20.0%)	60	NA	NA
WP_023994644.1|3185509_3186526_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3186722_3187547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3187624_3188548_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3188718_3189870_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3189873_3190905_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3191033_3192005_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3192029_3194114_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3194180_3195173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3195281_3196616_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3196641_3198654_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3198650_3200699_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3200802_3201450_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3201590_3202085_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3202128_3202800_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3202814_3204308_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3204304_3207418_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3207430_3208537_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3208660_3209329_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3209549_3210500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3210582_3212541_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3212568_3213270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3213416_3214232_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3214228_3215044_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3215060_3215864_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3215847_3216282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3216278_3216713_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3216714_3217269_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3217286_3218237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3218549_3219707_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3219895_3220255_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3220291_3220768_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3220842_3221466_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3221468_3222725_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3222770_3223265_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3223261_3224629_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3224644_3226972_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3226971_3228045_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3228066_3228555_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3228572_3229220_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3229216_3229525_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3229542_3231555_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3231551_3233054_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3233064_3234549_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3234565_3234895_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3235195_3237427_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3237638_3239909_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3240021_3240540_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3240549_3241326_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3241322_3243113_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3243172_3244153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3244290_3245208_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3245336_3246197_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3246232_3249688_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3249717_3250401_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3250397_3250886_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3250984_3251935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3251931_3252951_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3252960_3255669_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3255816_3256473_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3256571_3257522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3309115	3352022	4102311	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3309115_3310066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3310167_3310596_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3310668_3312864_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313085_3314036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3313995_3314520_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3314651_3315623_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3315742_3318187_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3318202_3318793_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3319036_3319987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3320144_3321410_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3321443_3322541_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3323195_3324146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3324146_3324716_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3324783_3325599_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3325765_3327385_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3327463_3328405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3328404_3329289_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3329292_3330945_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3330984_3332382_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3332423_3333803_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3333842_3334061_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3334401_3335274_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3335433_3336384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3337115_3337493_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3337477_3338179_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3338322_3339015_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3339014_3340118_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3340227_3342600_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3342596_3344156_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3344180_3344978_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3345009_3346155_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3346259_3347702_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3347704_3348934_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3351071_3352022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3361314	3393997	4102311	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3361314_3363045_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3363110_3363683_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3363663_3364350_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3364705_3365377_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3365705_3365927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3365926_3366208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3366204_3366720_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3366719_3367271_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3367249_3367492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3367496_3368309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3368308_3368572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3368612_3368810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3368790_3369207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3369211_3373168_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3373160_3373550_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3373546_3374080_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3374147_3374507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3374516_3377129_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3377154_3377445_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3377462_3377792_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3377801_3378320_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3378574_3379075_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3379082_3379505_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3379501_3379900_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3379896_3380292_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3380291_3380492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3380493_3380976_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3381038_3381290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3381964_3382915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3383343_3383946_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3384068_3384311_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3384316_3385372_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3385400_3386819_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3386821_3388099_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3388085_3388571_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3389210_3390161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3390417_3391107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3391099_3391351_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3391905_3392517_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3392588_3392795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3393046_3393997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3405216	3451535	4102311	transposase,protease,tRNA	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3405216_3406167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3406243_3408064_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3408068_3409142_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3409264_3410233_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3410306_3411218_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3411236_3411809_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3411889_3412438_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3412437_3414027_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3414096_3414336_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3414376_3415402_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3415467_3416649_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3416745_3417198_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3417207_3418548_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3418864_3419902_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3420283_3420643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3420726_3421668_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3421742_3422693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3422986_3424081_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3424162_3425044_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3425065_3425905_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3425980_3427498_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3427594_3428695_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3428711_3429134_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3429156_3429369_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3429415_3430336_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3430518_3431268_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3431270_3431600_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3431806_3433240_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3433251_3433635_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3433696_3434497_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3434595_3435546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3435601_3436414_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3436572_3437421_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3437621_3442016_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3442109_3443087_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3443473_3444052_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3444199_3445249_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3445289_3446024_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3446818_3447400_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3447396_3448290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3448423_3448825_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3448842_3449445_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3449502_3449886_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3450584_3451535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3596215	3651189	4102311	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3596215_3597166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3597282_3598350_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3598425_3601554_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3602061_3603027_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3603029_3603701_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3603857_3604817_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3604824_3605487_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3605483_3606434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3606555_3607809_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3607786_3608749_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3608880_3609375_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3609374_3610607_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3611352_3611634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3611620_3612607_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3612750_3613155_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3613296_3616683_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3616713_3618177_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3618197_3619814_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3619899_3620559_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3620588_3621029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3621539_3621743_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3621918_3622824_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3622922_3623873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3623971_3624922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3626703_3627897_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3627962_3628991_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3629017_3630190_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3630315_3631293_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3631303_3632275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3632341_3633127_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3633119_3634352_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3634547_3635303_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3635413_3635932_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3637720_3639121_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3639220_3639565_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3639653_3640124_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3640534_3640933_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3641064_3642015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3644459_3645194_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3645603_3645783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3645973_3647287_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3647302_3648814_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3648810_3650016_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3650211_3651189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3741002	3795197	4102311	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3741002_3741953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3742075_3742804_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3742900_3744079_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3744075_3744909_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3744945_3745686_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3745805_3746981_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3746977_3747931_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3747944_3748346_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3748338_3748944_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3749031_3749196_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3749312_3750161_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3750157_3750811_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3750827_3752111_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3752350_3753976_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3754069_3754471_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3754495_3754930_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3754931_3756581_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3756621_3757791_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3757793_3758657_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3762020_3762725_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3762718_3763513_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3763509_3764475_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3764478_3765399_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3765495_3766659_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3766881_3767772_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3767775_3768279_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3768321_3769320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3769316_3770267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3770355_3770643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3770834_3771785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3771844_3772405_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3773907_3774789_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3774902_3776105_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3776233_3778093_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3778170_3778980_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3779050_3780052_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3780083_3780944_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3781143_3782148_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3782144_3783731_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3783739_3784666_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3784688_3785315_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3785413_3786364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3786360_3787497_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3787550_3788327_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3788351_3788810_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3788949_3789591_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3789655_3791038_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3791057_3791912_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3792070_3792682_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3792691_3793141_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3793659_3793800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3793807_3793969_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3794246_3795197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	3805813	3866702	4102311	transposase,protease,tRNA	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3805813_3806764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3807494_3808475_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3808488_3809613_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3809620_3811375_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3811481_3812381_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3812445_3813429_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3813564_3814545_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3814561_3815953_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3816104_3816641_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3816571_3817957_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3818099_3818738_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3818824_3820714_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3820710_3821652_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3821757_3822807_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3823059_3823761_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3823757_3824456_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3824456_3825812_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3825808_3826300_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3826318_3827275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3828685_3830788_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3830958_3832002_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3832045_3832789_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3833810_3834221_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3835170_3835968_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3836066_3837017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3837013_3837964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3838050_3839001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3839115_3840117_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3840207_3840774_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3841092_3843006_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3843047_3844478_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3844590_3846003_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3846019_3846715_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3846933_3847884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3847908_3848808_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3848962_3849511_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3849549_3850269_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3850340_3853283_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3853876_3856672_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3857129_3858062_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3858173_3859523_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3859554_3860280_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3860330_3861182_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3861311_3861998_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3861997_3862642_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3862698_3862974_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3862999_3863296_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3863341_3864121_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3864126_3865167_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3865271_3865595_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3865751_3866702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011194	Bordetella pertussis strain H800 chromosome, complete genome	4102311	4024482	4077914	4102311	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4024482_4025433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025602_4026829_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027028_4027895_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027887_4028850_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028950_4029901_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029999_4030950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031048_4031999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031995_4033489_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033485_4036593_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036589_4039658_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039654_4040905_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4041085_4041847_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4041879_4042530_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4042532_4043372_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043612_4044356_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4044438_4044786_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044883_4045726_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045770_4046658_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046684_4046873_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046970_4048428_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048414_4049941_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049959_4050427_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4050426_4051449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4051569_4052289_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4052364_4053465_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053466_4054657_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054776_4055793_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056111_4056783_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056779_4057688_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057899_4058547_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4062398_4063475_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063485_4064295_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064384_4065158_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065340_4066291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4066179_4067202_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4067191_4068346_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4068385_4069798_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4069922_4070789_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4070790_4071615_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071611_4072373_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4072453_4073140_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4073313_4074321_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4074317_4075097_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4075154_4076417_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4076963_4077914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
