The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	143080	217424	4106396	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|143080_144031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|144027_145218_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|145339_146104_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|146190_147294_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|147485_148502_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|148783_149272_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|150615_151296_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|151357_152209_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|152205_153003_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|153106_154000_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|154011_155901_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|156237_160011_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|160007_160958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|161266_161959_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|162332_162833_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|162939_163860_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|163876_164353_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|164446_166297_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|166352_167111_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|167138_168572_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|168645_169425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|169437_170271_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|170279_171050_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|171049_172114_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|172265_174893_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|174956_177578_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|178505_178964_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|179242_181486_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|181682_183707_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|183830_184793_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|185004_186144_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|186166_187132_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|187327_188518_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|188531_188777_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|188805_190827_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|190873_192481_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|192581_193751_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|196632_197583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|197606_198665_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|198739_199114_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|199668_200619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|202175_203021_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|203108_204272_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|204690_205662_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|205700_207128_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|207247_208039_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|208157_210611_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|210705_211815_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|211817_213227_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|213632_213767_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|213862_214234_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|214230_214503_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|214551_216243_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|216473_217424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	520658	581848	4106396	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|520658_521609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|522105_522975_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|522971_523793_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|523991_524483_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|524501_525575_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|525621_526725_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|526800_527421_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|527441_527951_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|528005_528257_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|528320_529454_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|529461_529848_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|529844_532364_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|532792_533131_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|533127_533634_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|533695_534496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|534606_535548_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|535641_537177_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|538856_540707_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|540710_541544_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|541543_542485_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|542736_543708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|543849_546138_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|546444_547353_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|547407_548373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|548447_550109_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|550180_550891_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|551039_551990_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|552688_553072_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|553129_553732_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|553749_554151_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|554284_555178_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|555174_555756_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|556550_557285_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|557325_558375_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|558522_559101_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|559487_560465_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|560558_564953_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|565153_566002_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|566160_566973_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|567028_567979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|568077_568878_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|568939_569323_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|569334_570768_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|570974_571304_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|571306_572056_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|572238_573159_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|573205_573418_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|573440_573863_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|573879_574980_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|575076_576594_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|576669_577509_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|577530_578412_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|578493_579588_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|579881_580832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|580906_581848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	587172	633363	4106396	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|587172_588198_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|588238_588478_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|588547_590137_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|590136_590685_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|590765_591338_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|591356_592268_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|592341_593310_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|593432_594506_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|594510_596331_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|596407_597358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|597446_597782_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|597915_598566_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|598587_600006_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|600075_600831_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|600799_601558_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|601568_602450_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|602466_603174_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|603176_603935_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|604144_605887_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|605879_606404_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|606443_607238_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|607405_608479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|608577_609528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|609779_609986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|610057_610669_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|611223_611475_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|611467_612157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|612413_613364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|614003_614489_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|614475_615753_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|615755_617174_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|617202_618258_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|618263_618506_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|618628_619231_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|619659_620610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|621284_621536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|621598_622081_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|622082_622283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|622282_622678_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|622674_623073_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|623069_623492_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|623499_624000_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|624254_624773_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|624782_625112_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|625129_625420_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|625445_628058_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|628067_628427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|628494_629028_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|629024_629414_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|629406_633363_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 5
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	639529	693459	4106396	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|639529_641260_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|641312_641741_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|641743_642424_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|642423_642882_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|642918_643893_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|643909_645226_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|645257_645755_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|645841_646531_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|646530_647580_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|647576_648371_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|648539_648890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|648865_649423_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|650552_651503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|653640_654870_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|654872_656315_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|656419_657565_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|657596_658394_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|658418_659978_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|659974_662347_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|662456_663560_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|663559_664252_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|664395_665097_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|665081_665459_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|666190_667141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|667300_668173_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|668513_668732_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|668771_670151_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|670192_671590_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|671629_673282_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|673285_674170_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|674169_675111_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|675189_676809_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|676975_677791_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|677858_678428_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|678428_679379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|680033_681131_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|681164_682430_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|682587_683538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|683781_684372_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|684387_686832_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|686951_687923_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|688054_688579_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|688538_689489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|689710_691906_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|691978_692407_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|692508_693459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	745052	794074	4106396	holin,transposase	Acinetobacter_phage(25.0%)	43	NA	NA
WP_005013747.1|745052_746003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|746101_746758_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|746905_749614_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|749623_750643_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_005012067.1|750639_751590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|751688_752639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|752737_753226_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|753222_753906_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|753935_757391_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|757426_758287_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|758415_759333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|759470_760451_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|760510_762301_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|762297_763074_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|763083_763602_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|763714_765985_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|766196_768428_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|768728_769058_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|769074_770559_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|770569_772072_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|772068_774081_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|774098_774407_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|774403_775051_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|775068_775557_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|775578_776652_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|776651_778979_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|778994_780362_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|780358_780853_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|780898_782155_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|782157_782781_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|782855_783332_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|783368_783728_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|783916_785074_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|785386_786337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|786354_786909_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|786910_787345_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|787341_787776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|787759_788563_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|788579_789395_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|789391_790207_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|790353_791055_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|791082_793041_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|793123_794074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	817097	870615	4106396	holin,transposase	Acidithiobacillus_phage(33.33%)	44	NA	NA
WP_023994644.1|817097_818114_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|818310_819294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|820892_822281_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|822311_823301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|823411_824644_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|824925_825726_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|825748_827980_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|828767_829214_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|829235_829982_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|830125_831103_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|831736_832348_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|832341_833559_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|833699_834650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|834646_835366_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|835486_837646_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|837736_838006_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|838299_838827_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|838845_839625_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|839792_840809_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|840881_841373_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|841383_843099_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|844262_845213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|845209_847042_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|847440_848100_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|848193_848340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|848448_848616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|848627_849308_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|849589_850306_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|850320_851622_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|853766_856655_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|856878_858231_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|858259_858781_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|858777_860232_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|860266_860515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|860620_861496_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|861521_862577_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|862589_863381_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|863413_864784_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|865960_866911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|866963_867185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|867344_867557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|867676_868795_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|869300_869552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|869664_870615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	884122	956616	4106396	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012067.1|884122_885073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|885069_886044_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|886168_887080_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|887356_887749_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|887878_888829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|888858_889041_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|889813_890995_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|891210_891888_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|891884_892610_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|892735_893317_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|893687_896369_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|896368_897502_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|897494_898580_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|898666_899566_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|899562_900891_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|900905_901577_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|901764_903480_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|903481_903841_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|904032_904347_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|904389_905610_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|905606_906548_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|906544_907534_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|907568_908153_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|908251_909202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|909282_910194_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|910254_911400_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|911419_912334_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|912405_913155_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|913154_914084_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|914327_916154_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|916236_916878_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|917100_918102_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|919938_921003_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|921800_922709_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|924196_925471_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|925624_926005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|926012_926885_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|927190_927571_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|927781_928507_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|928602_929553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|929657_930707_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|930844_931861_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|933369_933942_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|934001_934733_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|934784_935702_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|936509_939689_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|939685_941068_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|941137_941389_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|941534_942149_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|942335_944450_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|944525_945377_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|945373_946000_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|945996_947751_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|948043_950749_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|950761_952423_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|952435_954226_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|954447_955623_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|955665_956616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	968223	1017161	4106396	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_023853531.1|968223_969357_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|969449_969602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|969633_970182_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|970200_970686_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|970863_971802_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|971804_972122_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|972167_973112_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|974792_975443_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|975496_975832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|975828_976689_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|976705_976987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|977060_977324_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|977567_978518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|978816_979554_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|979989_980313_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|980347_980908_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|981028_981904_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|981916_982864_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|982965_983259_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|983285_985343_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|985357_985858_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|985931_987638_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|988501_989554_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|989606_989996_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|990004_990637_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|990736_991753_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|992541_993591_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|993587_995231_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|995227_996115_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|996255_996729_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|996718_997741_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|997737_999165_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930158.1|1000102_1001119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1001451_1002387_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1002436_1004317_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1004383_1004728_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1004872_1006009_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1006005_1007079_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1007236_1008673_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1008763_1009405_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1009740_1010757_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1011089_1013837_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1013903_1015325_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1015588_1016305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1016389_1016707_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1016747_1017161_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 10
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1026229	1088768	4106396	protease,tRNA,transposase	Planktothrix_phage(18.18%)	48	NA	NA
WP_005013747.1|1026229_1027180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1027547_1028324_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1028368_1029226_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1029247_1030264_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1030398_1031439_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1031633_1033715_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1033950_1035444_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1035674_1036469_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1036689_1038048_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1038044_1038887_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1038905_1040792_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1040733_1040985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1041029_1041662_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1041680_1042283_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1042434_1043385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1043965_1044673_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1045031_1046018_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1046157_1047171_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1047167_1048118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1048230_1048689_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1048725_1050039_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1050056_1050428_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1050424_1051888_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1052028_1052757_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1052738_1055588_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1055800_1056751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1056918_1057743_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1057742_1058621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1059525_1060641_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1060669_1061464_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1061460_1063326_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1063404_1064037_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1064033_1064336_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1064378_1065899_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1065905_1066661_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1066690_1067795_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1067897_1069598_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1069579_1070557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1070566_1071847_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1071839_1072535_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1072568_1073396_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1073677_1076908_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1077643_1081570_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1084402_1085266_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1085265_1086234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1086303_1087149_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1087216_1087771_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1087817_1088768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1248188	1316675	4106396	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1248188_1249139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1249907_1250546_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1251435_1251882_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1251963_1252665_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1252665_1253433_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1253429_1254668_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1254667_1255594_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1255696_1256812_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1256827_1257778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1258131_1258713_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1258709_1259543_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1259753_1261067_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1261243_1262125_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1262144_1262996_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1263048_1264137_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1264247_1265375_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1265609_1266221_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1266319_1267270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1267491_1267869_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1268016_1268514_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1268510_1269038_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1269171_1269987_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1269999_1271181_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1271228_1272122_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1272248_1272719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1272844_1273672_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1273700_1274477_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1274473_1274749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1274763_1275228_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1275239_1275941_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1276050_1276551_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1276633_1277812_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1279439_1279775_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1279962_1281411_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1281468_1281813_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1281919_1282459_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1282551_1283502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1283600_1284008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1284240_1284672_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1284853_1285258_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1286494_1286818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1286820_1287708_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1287740_1288166_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1288237_1288591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1288830_1289337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1289375_1290707_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1290766_1291582_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1291578_1292433_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1295495_1298039_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1299405_1301160_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1301156_1303277_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1303281_1305477_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1305473_1308815_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1311617_1312568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1312633_1312813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1312929_1313685_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1313671_1314817_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1315724_1316675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1377166	1432654	4106396	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1377166_1378117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1379318_1379765_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1379757_1381233_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1381229_1381985_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1381977_1382988_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1382977_1384654_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1384966_1385299_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1385312_1385708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1385717_1386044_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1386040_1386367_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1386293_1387316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1387312_1387663_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1387710_1388139_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1388146_1389520_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1389660_1390038_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1390300_1391608_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1391668_1392499_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1392495_1392984_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1393025_1394546_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1394589_1395066_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1395869_1398467_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1398496_1399318_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1400044_1400794_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1400977_1401856_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1401953_1402670_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1402684_1403245_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1403411_1404176_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1404195_1405053_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1405049_1406249_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1406288_1407623_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1407675_1410012_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1410137_1410701_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1410709_1411801_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1411872_1412328_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1412328_1413123_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1413119_1414301_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1414287_1414893_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1414889_1415663_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1415674_1416502_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1416663_1419027_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1419094_1419814_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1419937_1420363_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1420397_1421348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1421465_1422392_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1422457_1423615_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1423595_1424063_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1424210_1425161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1425177_1425612_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1425601_1425952_+	RnfH family protein	NA	NA	NA	NA	NA
WP_077069203.1|1426148_1427303_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1427299_1428472_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1428519_1429413_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1429458_1429896_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1429955_1430645_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1430654_1431605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1431703_1432654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1637816	1707468	4106396	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1637816_1640474_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1640551_1641754_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1641750_1642263_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1642385_1642823_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1643099_1644050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1644148_1645099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1645352_1647158_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1647271_1647439_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1647502_1647739_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1648107_1649307_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1650822_1651773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1652224_1653226_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1653398_1654256_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1654252_1655515_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1655615_1655990_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1656062_1657250_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1657334_1658105_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1658218_1658983_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1658933_1660235_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1660231_1661038_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1662782_1663754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1663910_1664423_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1664581_1665556_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1666556_1667351_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1667376_1668183_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1668293_1668884_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1668894_1670073_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1670175_1670550_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1670802_1672134_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1672200_1675431_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1676921_1677668_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1677752_1678214_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1678251_1679310_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1679272_1681102_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1681141_1681714_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1683138_1683960_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1684278_1685601_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1685960_1686596_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1686555_1687506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1688376_1689249_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1689326_1690466_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1690824_1692081_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1692086_1692614_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1692618_1693437_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1693436_1694159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1694180_1694495_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1694512_1695661_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1695691_1696567_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1696563_1697883_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1697955_1699152_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1699162_1700650_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1703244_1704144_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1704281_1705247_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1705345_1706296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1706517_1707468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1718964	1847940	4106396	protease,tRNA,transposase	Klosneuvirus(18.75%)	117	NA	NA
WP_005013747.1|1718964_1719915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1721052_1721349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1721523_1722876_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1723018_1724035_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1726014_1727028_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1727114_1728020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1728176_1728521_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1728678_1729137_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1729150_1731367_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1731363_1732425_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1732453_1733428_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1733379_1734198_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1734210_1734819_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|1734993_1735389_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1735407_1736847_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1736875_1737223_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1737241_1738192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1738844_1739795_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1739878_1741696_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1741769_1742417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1742429_1743359_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|1743528_1743993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|1744240_1744921_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1744969_1746661_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|1746676_1747228_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|1747224_1747596_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|1747708_1748545_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|1748555_1749080_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1749177_1749357_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|1749486_1750461_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|1750591_1750948_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1750937_1751813_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|1751911_1752796_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|1752817_1754113_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|1755061_1755712_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|1755799_1757320_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|1757577_1759443_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_162268681.1|1760407_1760548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|1761362_1761722_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|1761709_1763146_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|1763142_1763796_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|1763792_1764986_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|1765089_1766364_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|1766360_1767311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|1767477_1768452_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|1768448_1768592_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|1770213_1770876_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|1770878_1771055_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|1771051_1771990_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|1772081_1773572_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|1773657_1773810_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|1773823_1774063_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|1774158_1774902_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|1774934_1775435_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|1775497_1776457_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|1776453_1777215_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|1777230_1778316_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|1778515_1779466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1779564_1780515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1780474_1780888_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|1781172_1781472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1781881_1784164_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|1784629_1784824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|1784849_1786880_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1786899_1787112_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1787389_1787929_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|1788042_1789338_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1789414_1790572_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1790755_1791655_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|1791673_1792978_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1792943_1794050_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1794137_1794374_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1794512_1795583_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1795586_1796942_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|1796968_1798129_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1798131_1798770_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|1798771_1800058_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|1800116_1801412_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1801418_1801925_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|1801921_1803070_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1803097_1803523_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1803845_1806728_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1806820_1807576_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|1808341_1809691_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|1809789_1810740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|1810838_1811789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1811862_1812336_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1812361_1813570_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1813566_1814340_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|1814339_1814963_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|1815128_1815389_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|1815692_1816274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|1816340_1816595_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|1816581_1819206_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|1819277_1820096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|1820092_1820698_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|1820735_1821869_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|1823584_1823959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|1824056_1825331_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|1825334_1826912_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|1827818_1829174_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|1829170_1830805_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|1830797_1831628_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|1831645_1832590_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|1832642_1834217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|1834264_1834624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|1834616_1834937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|1835052_1835985_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|1836087_1837044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|1837193_1838531_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|1838535_1839792_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|1839987_1841034_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|1841091_1841460_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|1841590_1842463_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|1842539_1843442_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|1844498_1845716_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1846989_1847940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	1863218	1928039	4106396	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|1863218_1864169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|1864739_1864952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|1864969_1865701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|1865735_1866377_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|1866369_1867038_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|1869250_1870027_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|1870048_1871206_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|1871202_1871634_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|1871630_1872434_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|1872447_1872849_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|1872915_1873887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|1873952_1875176_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|1875403_1876354_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|1876477_1878931_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|1879119_1880424_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|1880528_1881182_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|1881184_1882495_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|1882691_1883252_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|1883363_1883564_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|1883909_1884476_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|1884559_1884763_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|1885069_1885390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|1885431_1885713_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|1885787_1887044_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|1887426_1887756_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|1889326_1890148_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1890147_1891287_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|1891293_1892190_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|1892186_1894112_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|1894471_1897084_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|1897136_1899437_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|1899433_1900642_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|1900903_1901278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1901274_1902225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|1902323_1904318_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|1904377_1905343_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|1905332_1908194_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|1908196_1908703_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|1908807_1910016_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|1910017_1910956_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|1911117_1911591_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1911587_1912538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|1912648_1913089_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1913217_1914447_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|1914485_1915307_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1915360_1916512_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|1916603_1917092_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|1919642_1922192_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|1922262_1924836_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|1925101_1925302_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|1925333_1925495_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|1925552_1925891_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1926039_1926990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1927088_1928039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2005919	2081538	4106396	protease,transposase	Bacillus_virus(12.5%)	60	NA	NA
WP_010929591.1|2005919_2006870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2007399_2008422_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2008450_2009281_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2009297_2010995_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2011059_2012136_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2012295_2013159_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2013189_2013759_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2013775_2014627_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2015684_2016566_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2016640_2017630_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2017692_2018643_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2018705_2019563_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2019622_2020111_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2021683_2022874_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2022870_2024457_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2024475_2025543_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2025647_2027192_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2027611_2029186_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2029293_2030310_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2030306_2031146_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2031150_2032788_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_010931070.1|2032784_2033735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2033877_2035152_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2035181_2035472_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2035544_2036558_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2036577_2037840_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2037842_2038766_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2038762_2040256_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2040266_2041199_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2041380_2042706_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2042740_2044084_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2044156_2045677_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2045831_2046563_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2046630_2047971_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2047986_2048898_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2048888_2049482_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2049543_2049930_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2049941_2050412_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2050423_2051047_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2051067_2053815_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_019248843.1|2060393_2060642_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_010930705.1|2060730_2061693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|2062924_2064442_-	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010926318.1|2064667_2065579_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2065940_2066891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248436.1|2066958_2067408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930703.1|2067793_2068564_-	anion permease	NA	NA	NA	NA	NA
WP_010930702.1|2068567_2069470_-	EamA family transporter	NA	NA	NA	NA	NA
WP_010930701.1|2069538_2069838_-	YciI family protein	NA	NA	NA	NA	NA
WP_003810207.1|2069973_2070264_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003810206.1|2070270_2070657_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_029443737.1|2070669_2071413_-	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_010930699.1|2071479_2074071_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_010930698.1|2074465_2074804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930697.1|2074806_2075355_+	OmpA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2075436_2076387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930696.1|2076463_2077198_-	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_010930695.1|2077360_2079565_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930694.1|2079841_2080444_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930208.1|2080587_2081538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2229241	2290589	4106396	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2229241_2230192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2230308_2231028_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2231200_2232187_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2232187_2232670_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2232673_2233957_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2233953_2234892_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2234888_2236598_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2236607_2237855_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2239465_2240755_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2241892_2242651_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2243327_2244071_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2244145_2244886_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2245081_2245918_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2245968_2246739_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2246788_2247841_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2247837_2248464_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2248460_2249495_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2249673_2250690_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2250788_2251739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2254479_2255769_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2255887_2256325_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2256368_2257577_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2257723_2258188_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2258211_2259162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2260146_2260920_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2260916_2261915_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2261999_2262776_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2262931_2264536_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2264916_2266041_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2266167_2266791_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2266787_2268689_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2268737_2269532_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2269544_2270546_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2270542_2271049_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2271041_2271890_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2271987_2272530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2272573_2273524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2273679_2274006_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2274002_2274287_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2274283_2274763_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2274759_2276388_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2276384_2276729_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2276728_2279662_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2280820_2281771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2281869_2282166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2282272_2283190_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2283194_2283908_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2283921_2284893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2286612_2286993_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2286996_2288184_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2288607_2289345_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2289638_2290589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2311380	2382534	4106396	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2311380_2312331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2312883_2314509_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2314558_2315593_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2315595_2316942_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2316938_2318453_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2318443_2319454_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2319927_2320869_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2320877_2321846_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2323385_2324354_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2324531_2325521_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2325567_2326326_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2326515_2327253_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2327351_2328302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2328486_2329269_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2329262_2329964_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2330203_2330806_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2332132_2333083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2333079_2334636_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2334628_2335402_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2335460_2336411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2336492_2337668_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2337681_2339739_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2339735_2340761_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2340772_2342062_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2342084_2343182_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2343178_2344069_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2344065_2346150_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2346181_2347351_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2347392_2348133_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2348132_2348903_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2349227_2349395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2349758_2350544_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2350570_2352655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2352822_2354778_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2355101_2355602_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2355700_2357227_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2357364_2358252_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2358266_2359220_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2359271_2361362_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2361377_2361764_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2364457_2365261_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2366554_2367457_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2367521_2368298_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2368619_2369669_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2369792_2371463_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2371467_2372262_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2372360_2373311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2373330_2374236_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2374313_2375012_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2375171_2376116_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2376125_2377613_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2377612_2378680_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2378743_2380156_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2380341_2381562_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2381583_2382534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2466736	2517908	4106396	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2466736_2467687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2467785_2468556_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2468552_2469224_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2469220_2469862_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2469874_2470795_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2470955_2472116_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2472157_2473108_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2473772_2473973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2474095_2475790_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2475911_2476181_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2476296_2476695_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2476705_2477662_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2477798_2478344_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2478364_2480314_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2480701_2481478_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2481483_2481876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2482297_2483248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2483244_2484342_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2484373_2485324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2487105_2488347_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2488358_2489132_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2489158_2490109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2490207_2490990_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2491078_2492305_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2493030_2494416_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2494434_2495040_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2495036_2496893_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2496889_2497690_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2497704_2498898_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2498965_2499940_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2500062_2501286_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2501396_2503601_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2503895_2504555_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2504562_2504769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2505107_2505863_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2505878_2506040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2506133_2506649_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2506921_2507239_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2507183_2507828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2507953_2509309_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2509355_2510696_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2510797_2511430_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2511429_2513790_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2513831_2514791_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2514777_2515464_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2515460_2515793_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2515908_2516859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2516957_2517908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2616203	2656872	4106396	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2616203_2617154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2617264_2617447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2617546_2618143_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2618326_2619418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2619917_2620328_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2620386_2620728_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2620733_2623151_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2623163_2624186_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2624260_2624620_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2624635_2624833_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2625168_2626119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2626313_2626763_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2626759_2627710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2627820_2629269_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2629383_2629665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2629768_2630719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2630963_2631677_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2631799_2632027_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2632321_2632960_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2633068_2634103_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2634099_2635050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2635465_2635990_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2635993_2636263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2636461_2637523_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2637606_2639241_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2639242_2640046_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2640074_2641034_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2641037_2642552_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2642588_2643593_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2644024_2644495_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2644530_2645142_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2645172_2645796_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2645876_2647409_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2647443_2648685_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2648728_2649760_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2649756_2650926_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2650919_2651600_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2651761_2652604_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2652766_2653738_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2653909_2654788_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2654810_2655881_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2655921_2656872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2712337	2785207	4106396	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2712337_2712754_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2712864_2713497_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2713525_2713969_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2713990_2715082_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2715136_2715937_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2716072_2716693_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2716832_2717306_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2718445_2719396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2719392_2727054_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2727294_2731341_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2731653_2732235_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2732231_2733530_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2733609_2734638_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2734898_2735849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2735845_2736796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2737112_2737718_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2737771_2739085_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2739159_2739630_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2739629_2740418_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2740428_2742081_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2742168_2743119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2744280_2744787_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2744783_2745548_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2745563_2745848_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2745912_2746902_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2747073_2748003_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2747974_2748661_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2748694_2749240_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2749284_2750550_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2750546_2751449_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2752630_2753575_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2753669_2755187_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2755228_2756857_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2756964_2757846_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2760958_2761333_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2761357_2761696_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2761739_2763374_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2763412_2764759_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2764866_2766288_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2766357_2766942_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2767044_2767995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2768129_2769236_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2769246_2770344_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2770488_2771694_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2771700_2772222_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2772218_2772710_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2772706_2772958_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2772938_2773424_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2773559_2777021_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2777038_2777923_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2777932_2778364_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2778610_2779114_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2779191_2780592_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2780666_2781542_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2781538_2782546_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2783013_2783319_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2783409_2784000_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2784190_2785207_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2788350	2855160	4106396	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2788350_2789301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2789399_2790350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2790346_2791141_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2791172_2791877_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2791951_2792752_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2792748_2793156_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2793152_2793794_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2793786_2795787_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2797047_2798379_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2798375_2799326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2801032_2801299_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2802006_2802345_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2806897_2807500_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2807596_2808886_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2808943_2809675_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2809671_2810475_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2810471_2811560_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2811556_2812486_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2812634_2813780_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2813801_2814752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2815082_2818904_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2819060_2819729_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2819733_2821407_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2821425_2822745_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2822749_2825065_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2825120_2827289_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2827285_2832475_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2832564_2832879_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2833106_2833352_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2833446_2833965_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2834064_2835270_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2835385_2836783_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2836899_2837478_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2837550_2838942_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2839109_2840060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2840340_2840961_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2840957_2841371_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2841367_2842411_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2842466_2842655_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2842664_2843429_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2843519_2844176_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2844267_2845026_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2845051_2846653_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2846853_2847858_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2847958_2848222_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2848339_2849116_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2849706_2850657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2853040_2854153_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2854209_2855160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	2885546	2930286	4106396	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2885546_2886497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2886617_2887514_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2889791_2892017_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2892181_2893270_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2893226_2893880_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2893927_2894725_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2895256_2896207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2896281_2897436_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2897492_2898443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2898541_2898847_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2898875_2899310_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2899311_2900556_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2900552_2901263_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2901277_2902189_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|2902558_2903509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2903600_2904005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2904001_2904460_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2904466_2905375_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2905371_2906238_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2906224_2907052_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2907062_2908190_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2909267_2910506_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2910547_2911810_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2911816_2912569_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2912620_2912806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2913081_2913546_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2913577_2914237_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2914381_2916490_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2916486_2917437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2917540_2918161_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2918252_2919005_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2920139_2921264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2921309_2921678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2921919_2922870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2923905_2924448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2924833_2925784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2925780_2926746_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2926815_2927652_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2928164_2929274_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2929335_2930286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3310232	3363973	4106396	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3310232_3311183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3311587_3312232_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3312256_3312841_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3312941_3313559_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3313561_3315277_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3315273_3315582_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3315598_3316216_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3316260_3316563_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3316663_3317518_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3317705_3317930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3318099_3318372_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3318789_3319197_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3319566_3320361_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3320461_3321697_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3321765_3322782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3322793_3324170_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3324166_3325363_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3325359_3326898_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3326894_3328154_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3330094_3331045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3331811_3332906_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3332898_3334233_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3334186_3334870_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3334895_3336059_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3336055_3337057_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3337056_3337929_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3337925_3338675_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3338671_3339463_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3339459_3340599_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3340874_3341660_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3341693_3342476_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3342479_3342869_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3344008_3344872_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3344907_3345996_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3345992_3346943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3347296_3350275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3351201_3352080_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3354028_3354979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3354975_3355443_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3355485_3356256_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3356276_3357077_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3357087_3358497_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3358591_3359377_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3359616_3360633_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3360740_3361133_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3361270_3361951_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3361955_3362927_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3363022_3363973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3370128	3429428	4106396	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3370128_3371892_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3372003_3372882_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3372994_3373810_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3373813_3374065_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3374149_3375166_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3375496_3375718_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3378078_3378996_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3379493_3380702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3380781_3382353_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3382470_3383406_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3383594_3384539_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3385106_3390824_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3390829_3391957_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3392012_3392639_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3392910_3393927_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3394022_3394733_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3394729_3395719_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3395814_3397446_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3397448_3398186_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3398341_3399214_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3399482_3400703_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3400699_3401359_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3401430_3402063_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3402092_3402611_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3402621_3403731_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3403777_3404632_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3404633_3405536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3406758_3407709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069207.1|3409465_3410455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3410451_3410610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3410630_3411419_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3411415_3412447_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3412465_3413029_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3413084_3414605_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3414868_3415573_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3415580_3416318_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3416423_3416798_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3416840_3418130_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3418126_3419296_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3419292_3420132_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3420191_3421127_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3421139_3422090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3422188_3423151_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3423182_3423542_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3423666_3424569_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3424570_3426343_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3426377_3427154_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3428477_3429428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3444366	3503488	4106396	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3444366_3445317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3445445_3446579_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3446622_3447528_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3447530_3449231_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3449227_3450148_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3450155_3451133_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3451191_3452226_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3454200_3454437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3454563_3455427_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3455515_3456337_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3456416_3457154_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3457150_3458143_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3458256_3458919_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3458963_3460112_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_077069208.1|3462435_3463386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3463726_3464677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3464775_3465726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3466022_3466520_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3466562_3468338_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3468345_3469212_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3469218_3469953_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3471122_3471917_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3472206_3472797_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3472830_3474159_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3474233_3475379_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3475490_3476489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3476451_3476886_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3478402_3479287_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3479283_3480489_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3480485_3481346_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3481458_3483249_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3483289_3483955_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3483955_3484264_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3484429_3485716_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_005012067.1|3487149_3488100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|3488198_3489149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3491100_3492315_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3492420_3493410_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3493406_3494015_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3494027_3494657_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3494653_3495274_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3495305_3496097_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3496948_3497404_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3497422_3498349_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3498402_3499689_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3500619_3501492_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3501488_3502439_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3502537_3503488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3513288	3584629	4106396	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|3513288_3514563_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3515285_3516236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3516334_3517285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|3517383_3519759_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|3519778_3520615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929953.1|3520611_3521409_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929952.1|3521405_3523595_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|3523646_3524633_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|3524714_3526517_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|3526774_3528892_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929948.1|3528921_3530106_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|3530127_3530616_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|3530765_3532598_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|3532795_3533776_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|3533832_3534852_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|3534915_3535809_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|3536207_3536987_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|3536986_3539128_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|3539275_3540220_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|3540303_3541287_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|3541651_3542926_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|3542956_3543385_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|3543395_3544070_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|3544062_3545235_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|3545367_3546387_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|3546567_3547758_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929935.1|3547771_3548902_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929934.1|3548945_3550667_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|3550785_3551748_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|3551854_3552826_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|3553444_3554113_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|3554109_3554517_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|3554513_3555464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3557908_3558643_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3559052_3559232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3559422_3560736_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3560751_3562263_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3562259_3563465_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3563660_3564638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|3564730_3565225_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|3565354_3566413_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|3566409_3568029_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_157734656.1|3567988_3568258_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|3568216_3569320_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|3569316_3569772_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|3569777_3570701_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|3570790_3571450_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|3571446_3572361_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|3572449_3573400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486055.1|3573475_3574456_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|3574916_3575516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|3575584_3576577_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|3576626_3578216_+	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_014486053.1|3578256_3579153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|3579149_3580856_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_019247259.1|3581023_3582202_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|3582198_3582969_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|3583017_3583719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|3583645_3584629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3654451	3708646	4106396	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3654451_3655402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3655524_3656253_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3656349_3657528_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3657524_3658358_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3658394_3659135_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3659254_3660430_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3660426_3661380_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3661393_3661795_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3661787_3662393_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3662480_3662645_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3662761_3663610_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3663606_3664260_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3664276_3665560_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3665799_3667425_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3667518_3667920_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3667944_3668379_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3668380_3670030_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3670070_3671240_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3671242_3672106_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3675469_3676174_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3676167_3676962_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3676958_3677924_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3677927_3678848_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3678944_3680108_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3680330_3681221_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3681224_3681728_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3681770_3682769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3682765_3683716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3683804_3684092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3684283_3685234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3685293_3685854_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3687356_3688238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3688351_3689554_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3689682_3691542_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3691619_3692429_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3692499_3693501_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3693532_3694393_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3694592_3695597_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3695593_3697180_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3697188_3698115_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3698137_3698764_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3698862_3699813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3699809_3700946_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3700999_3701776_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3701800_3702259_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3702398_3703040_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3703104_3704487_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3704506_3705361_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3705519_3706131_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3706140_3706590_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3707108_3707249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3707256_3707418_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3707695_3708646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3719262	3781200	4106396	tRNA,transposase,protease	uncultured_Caudovirales_phage(33.33%)	52	NA	NA
WP_005012067.1|3719262_3720213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3720943_3721924_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3721937_3723062_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3723069_3724824_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3724930_3725830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3725894_3726878_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3727013_3727994_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3728010_3729402_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3729553_3730090_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3730020_3731406_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3731548_3732187_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3732273_3734163_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3734159_3735101_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3735206_3736256_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3736508_3737210_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3737206_3737905_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3737905_3739261_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3739257_3739749_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3739767_3740724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3742134_3744237_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3744407_3745451_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3745494_3746238_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3747259_3747670_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3748619_3749417_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3749515_3750466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3750564_3751515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3751511_3752462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3752548_3753499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3753613_3754615_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3754705_3755272_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3755590_3757504_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3757545_3758976_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3759088_3760501_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3760517_3761213_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3761431_3762382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3762406_3763306_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3763460_3764009_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3764047_3764767_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3764838_3767781_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|3768374_3771170_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3771627_3772560_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3772671_3774021_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3774052_3774778_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3774828_3775680_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3775809_3776496_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3776495_3777140_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3777196_3777472_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3777497_3777794_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3777839_3778619_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3778624_3779665_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3779769_3780093_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3780249_3781200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	3811583	3879409	4106396	tRNA,transposase	Bacillus_phage(22.22%)	58	NA	NA
WP_005012067.1|3811583_3812534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815898.1|3812740_3813217_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|3813298_3813982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|3814006_3815614_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|3815662_3816292_-	LysE family transporter	NA	NA	NA	NA	NA
WP_010929660.1|3816325_3817756_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_003815889.1|3818038_3818668_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|3818645_3819548_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|3820991_3821942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|3822500_3824063_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|3824059_3824695_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929656.1|3824923_3825946_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|3826111_3826888_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|3827051_3827750_+	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|3827761_3829072_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|3829127_3829805_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|3829801_3831199_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|3831304_3831766_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_023853237.1|3831870_3833070_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929650.1|3833121_3833997_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|3834098_3834530_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|3834554_3835283_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|3835279_3836260_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|3837026_3837809_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929647.1|3837927_3838899_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247545.1|3838971_3839730_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_019247546.1|3839748_3840192_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_003817676.1|3840212_3841025_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|3841030_3841963_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|3841946_3843170_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|3843257_3844040_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|3844092_3848055_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|3848801_3850310_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_005012067.1|3850728_3851679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|3852945_3853824_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|3853851_3854154_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|3854246_3855686_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|3855684_3856332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|3856758_3858459_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|3858549_3859803_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|3860696_3861086_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|3861082_3862093_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|3862929_3863763_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|3863759_3864665_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|3864763_3865714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|3865814_3866636_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|3866741_3867782_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|3867824_3869117_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|3869127_3870003_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|3869999_3870800_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|3870875_3871892_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|3872174_3872492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|3872582_3872930_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|3873217_3874900_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|3874909_3875593_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|3875654_3876284_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|3876365_3877559_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|3878458_3879409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011193	Bordetella pertussis strain H784 chromosome, complete genome	4106396	4028567	4081999	4106396	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028567_4029518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029687_4030914_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031113_4031980_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031972_4032935_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033035_4033986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034084_4035035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035133_4036084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036080_4037574_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037570_4040678_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040674_4043743_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043739_4044990_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045170_4045932_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045964_4046615_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046617_4047457_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047697_4048441_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048523_4048871_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048968_4049811_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049855_4050743_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050769_4050958_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051055_4052513_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052499_4054026_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054044_4054512_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054511_4055534_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055654_4056374_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056449_4057550_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057551_4058742_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058861_4059878_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060196_4060868_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060864_4061773_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061984_4062632_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066483_4067560_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067570_4068380_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068469_4069243_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069425_4070376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070264_4071287_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071276_4072431_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072470_4073883_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074007_4074874_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074875_4075700_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075696_4076458_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076538_4077225_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077398_4078406_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078402_4079182_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079239_4080502_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4081048_4081999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
