The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	27282	70036	4103252	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	77634	136108	4103252	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	164893	225404	4103252	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	233336	286924	4103252	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	390857	448366	4103252	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	590420	651609	4103252	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612497_613469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619941_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624027_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639095_640448_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641067_641817_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647291_648164_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	656933	703124	4103252	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656933_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679540_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680984_681236_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681228_681918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683764_684250_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691855_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	709290	763220	4103252	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	885809	953785	4103252	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	997319	1069836	4103252	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|997319_998270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998374_999424_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999561_1000578_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002086_1002659_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002718_1003450_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003501_1004419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1008402_1009785_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009854_1010106_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010251_1010866_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011052_1013113_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013242_1014094_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014090_1014717_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014713_1016468_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016760_1019466_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019478_1021140_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021152_1022943_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023164_1024340_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024382_1025333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025431_1026172_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026366_1028403_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028420_1029431_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029548_1030742_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030771_1031545_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031541_1032732_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032757_1033696_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033692_1036041_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036195_1036837_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038166_1038319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038350_1038899_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038917_1039403_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039580_1040519_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040521_1040839_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040884_1041829_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043509_1044160_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044213_1044549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044545_1045406_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045422_1045704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045777_1046041_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046284_1047235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047533_1048271_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048706_1049030_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049064_1049625_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049745_1050621_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050633_1051581_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051682_1051976_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052002_1054060_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054074_1054575_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054648_1056355_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057218_1058271_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058323_1058713_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058721_1059354_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059453_1060470_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061300_1062308_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062304_1063948_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063944_1064832_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064972_1065446_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065435_1066458_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066454_1067882_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068819_1069836_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1073589	1134616	4103252	transposase,tRNA,holin	Catovirus(20.0%)	50	NA	NA
WP_010930155.1|1073589_1074726_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074722_1075796_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075953_1077390_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077480_1078122_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078457_1079474_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082620_1084042_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084305_1085022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085106_1085424_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085464_1085878_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085879_1086239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086281_1087826_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087909_1088740_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088774_1089929_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089971_1090844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090960_1093249_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094455_1094920_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094946_1095897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096264_1097041_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097085_1097943_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097964_1098981_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099115_1100156_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100350_1102432_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102667_1104161_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104391_1105186_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105406_1106765_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106761_1107604_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107622_1109509_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109450_1109702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109746_1110379_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110397_1111000_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111151_1112102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112682_1113390_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113748_1114735_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114874_1115888_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115884_1116835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116947_1117406_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117442_1118756_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118773_1119145_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119141_1120605_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120745_1121474_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121455_1124305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124517_1125468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125635_1126460_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126459_1127338_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128242_1129358_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129386_1130181_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130177_1132043_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132121_1132754_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132750_1133053_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133095_1134616_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1152186	1217769	4103252	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1152186_1153983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153982_1154951_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155020_1155866_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155933_1156488_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156534_1157485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157583_1158216_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158379_1160662_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160816_1163513_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163638_1164127_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166537_1169408_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169453_1170668_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170897_1172325_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172422_1173514_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173526_1174285_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174372_1175275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175271_1176222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176351_1177335_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177389_1178112_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179590_1180946_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181026_1183402_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183566_1185642_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185703_1186498_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186605_1187568_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187555_1188311_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188418_1190056_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190123_1190861_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190963_1191539_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191711_1192248_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192280_1192595_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192610_1193456_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193494_1194874_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194951_1195833_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195931_1196882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196878_1197289_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197396_1198251_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198243_1199206_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199251_1200376_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200481_1201360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201484_1202264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202417_1203839_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204273_1205971_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206197_1207139_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207465_1208212_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208219_1209146_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209267_1210185_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210224_1211178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211202_1211781_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213454_1214063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214140_1214494_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214577_1215567_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215769_1216720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216818_1217769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1316905	1385392	4103252	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316905_1317856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318624_1319263_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320152_1320599_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320680_1321382_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321382_1322150_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322146_1323385_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323384_1324311_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324413_1325529_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325544_1326495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326848_1327430_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327426_1328260_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328470_1329784_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329960_1330842_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330861_1331713_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331765_1332854_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332964_1334092_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334326_1334938_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1335036_1335987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336208_1336586_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336733_1337231_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337227_1337755_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337888_1338704_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338716_1339898_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339945_1340839_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340965_1341436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341561_1342389_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342417_1343194_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343190_1343466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343480_1343945_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343956_1344658_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344767_1345268_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345350_1346529_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348156_1348492_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348679_1350128_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350185_1350530_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350636_1351176_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351268_1352219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1352317_1352725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352957_1353389_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353570_1353975_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355211_1355535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355537_1356425_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356457_1356883_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356954_1357308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357547_1358054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358092_1359424_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359483_1360299_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360295_1361150_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364212_1366756_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368122_1369877_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369873_1371994_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371998_1374194_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374190_1377532_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380334_1381285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381350_1381530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381646_1382402_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382388_1383534_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384441_1385392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1445883	1501371	4103252	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445883_1446834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448035_1448482_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448474_1449950_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449946_1450702_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450694_1451705_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451694_1453371_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453683_1454016_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454029_1454425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454434_1454761_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1454757_1455084_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455010_1456033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456029_1456380_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456427_1456856_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456863_1458237_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458377_1458755_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459017_1460325_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460385_1461216_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461212_1461701_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461742_1463263_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463306_1463783_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464586_1467184_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467213_1468035_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468761_1469511_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469694_1470573_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470670_1471387_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471401_1471962_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472128_1472893_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472912_1473770_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473766_1474966_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475005_1476340_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476392_1478729_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478854_1479418_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479426_1480518_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480589_1481045_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481045_1481840_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481836_1483018_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483004_1483610_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483606_1484380_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484391_1485219_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485380_1487744_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487811_1488531_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488654_1489080_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489114_1490065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490182_1491109_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491174_1492332_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492312_1492780_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492927_1493878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493894_1494329_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494318_1494669_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494865_1496020_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496016_1497189_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497236_1498130_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498175_1498613_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498672_1499362_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1499371_1500322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500420_1501371_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1596068	1664154	4103252	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1596068_1596557_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1596674_1597253_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1597358_1597727_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1597825_1598776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1598782_1599895_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600581_1601784_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1601987_1604648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1604660_1608065_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1608732_1610958_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1611004_1611331_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611381_1611990_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612088_1613039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613108_1613873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1613869_1614406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1614572_1615424_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615483_1616110_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616106_1617057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1617155_1618268_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618257_1619259_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619364_1620876_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1620872_1622177_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622288_1622849_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623116_1623671_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624126_1624342_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624596_1627194_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627190_1628378_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1629036_1629651_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1629739_1630861_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1630878_1631784_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1632676_1633627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1633808_1634561_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634629_1635289_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635285_1636014_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636026_1638306_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638330_1638534_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1638575_1639208_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1639343_1640261_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1640257_1640971_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641208_1641979_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1641983_1642583_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1642827_1644318_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644376_1644661_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1645226_1646153_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646289_1647030_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647196_1648573_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1648754_1649660_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651311_1653114_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1653231_1653882_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1653980_1654931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1654952_1656173_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656358_1657771_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1657834_1658902_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1658901_1660389_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660398_1661343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661502_1662201_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662278_1663184_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663203_1664154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1700103	1755694	4103252	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1700103_1701054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701112_1701886_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1701878_1703435_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703431_1704382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1705708_1706311_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706550_1707252_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707245_1708028_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708212_1709163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1709261_1709999_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710188_1710947_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1710993_1711983_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712160_1713129_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714668_1715637_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715645_1716587_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717060_1718071_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718061_1719576_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719572_1720919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1720921_1721956_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1722005_1723631_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724183_1725134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725238_1726186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726239_1728054_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728046_1728721_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1728850_1731925_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1731938_1732238_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732552_1733176_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1733419_1734289_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734266_1735211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1735296_1736223_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1736335_1737115_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737105_1738302_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738332_1739283_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739504_1740194_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740258_1741014_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741065_1742058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742067_1743021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743136_1744099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745500_1745929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1745925_1746876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1747169_1747892_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748330_1749518_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1749521_1749872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751621_1752593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752606_1753320_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753324_1754242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754348_1754645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1754743_1755694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	1988458	2058110	4103252	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1988458_1991116_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1991193_1992396_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1992392_1992905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1993027_1993465_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1993741_1994692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1994790_1995741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1995904_1997800_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1997913_1998081_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1998144_1998381_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1998749_1999901_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2001464_2002415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2002866_2003868_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2004040_2004898_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2004894_2006157_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2006257_2006632_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2006704_2007892_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2007976_2008747_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2008860_2009625_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2009575_2010877_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2010873_2011680_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2013424_2014396_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2014552_2015065_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2015223_2016198_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2017198_2017993_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2018018_2018825_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2018935_2019526_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2019536_2020715_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2020817_2021192_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2021444_2022776_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2022842_2026073_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2027563_2028310_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2028394_2028856_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2028893_2029952_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2029914_2031744_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2031783_2032356_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2033780_2034602_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2034920_2036243_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2036602_2037238_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2037197_2038148_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2039018_2039891_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2039968_2041108_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2041466_2042723_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2042728_2043256_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2043260_2044079_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2044078_2044801_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2044822_2045137_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2045154_2046303_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2046333_2047209_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2047205_2048525_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2048597_2049794_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2049804_2051292_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2053886_2054786_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2054923_2055889_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2055987_2056938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2057159_2058110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2069606	2119002	4103252	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2069606_2070557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2071694_2071991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2072165_2073518_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2073660_2074677_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2076656_2077670_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2077756_2078662_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2078818_2079163_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2079320_2079779_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2079792_2082009_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2082005_2083067_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2083095_2084070_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2084021_2084840_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2084852_2085461_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2085635_2086031_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2086049_2087489_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2087517_2087865_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2087883_2088834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2089486_2090437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2090520_2092338_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2092411_2093059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2093071_2094001_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2094170_2094635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2094882_2095563_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2095611_2097303_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2097318_2097870_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2097866_2098238_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2098350_2099187_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2099197_2099722_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2099819_2099999_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2100128_2101103_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2101233_2101590_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2101579_2102455_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2102553_2103438_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2103459_2104755_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2105703_2106354_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2106441_2107962_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2108219_2110085_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2111130_2112081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2112098_2112239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2113053_2113413_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2113400_2114837_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2114833_2115487_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2115483_2116677_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2116780_2118055_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2118051_2119002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2130206	2198582	4103252	protease,transposase,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2130206_2131157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2131116_2131530_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2131814_2132114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2132523_2134806_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2135271_2135466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2135491_2137522_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2137541_2137754_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2138031_2138571_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2138684_2139980_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2140056_2141214_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2141397_2142297_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2142315_2143620_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2143585_2144692_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2144779_2145016_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2145154_2146225_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2146228_2147584_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2147610_2148768_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2148773_2149412_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2149413_2150709_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2150758_2152045_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2152060_2152567_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2152563_2153712_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2153739_2154165_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2154487_2157370_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2157462_2158218_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2158983_2160333_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2160431_2161382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2161480_2162431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2162504_2162978_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2163003_2164212_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2164208_2164982_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2164981_2165605_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2165770_2166031_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2166334_2166916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2166982_2167237_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2167223_2169848_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2169919_2170738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2170734_2171340_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2171377_2172511_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2174226_2174601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2174698_2175973_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2175976_2177554_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2178460_2179816_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2179812_2181447_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2181439_2182270_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2182287_2183232_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2183284_2184859_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2184906_2185266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2185258_2185579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2185694_2186627_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2186729_2187686_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2187835_2189173_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2189177_2190434_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2190629_2191676_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2191733_2192102_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2192232_2193105_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2193181_2194084_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2195140_2196358_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2197631_2198582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2213860	2278681	4103252	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2213860_2214811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215381_2215594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215611_2216343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216377_2217019_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2217011_2217680_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219892_2220669_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220690_2221848_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221844_2222276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2222272_2223070_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2223089_2223491_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223557_2224529_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224594_2225818_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2226045_2226996_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2227119_2229573_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229761_2231066_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2231170_2231824_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231826_2233137_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2233315_2233894_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2234005_2234206_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234551_2235118_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2235201_2235405_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235711_2236032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2236073_2236355_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236429_2237686_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2238068_2238398_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239968_2240790_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240789_2241929_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241935_2242832_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2242846_2244754_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2245113_2247726_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247778_2250079_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2250075_2251284_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2251545_2251920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251916_2252867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252965_2254960_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2255019_2255985_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255974_2258836_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258838_2259345_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259449_2260658_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260659_2261598_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261759_2262233_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2262229_2263180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2263290_2263731_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2263859_2265089_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2265127_2265949_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2266002_2267154_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2267245_2267734_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2270284_2272834_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2272904_2275478_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2275743_2275944_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2275975_2276137_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2276194_2276533_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2276681_2277632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2277730_2278681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2349357	2412935	4103252	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2349357_2350308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2350609_2351086_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2351709_2353347_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2353377_2354691_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2354824_2355142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2355242_2356565_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2356561_2357512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2357610_2358561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2359090_2360113_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2360141_2360972_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2360988_2362686_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2362750_2363827_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2363986_2364850_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2364880_2365450_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2365466_2366318_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2367375_2368257_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2368331_2369321_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2369383_2370334_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2370396_2371254_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2371313_2371802_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2373374_2374565_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2374561_2376148_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2376166_2377234_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2377338_2378883_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2379302_2380877_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2380993_2382001_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2381997_2382837_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2382841_2384479_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2384475_2385426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2385568_2386843_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2386872_2387163_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2387235_2388249_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2388268_2389531_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2389533_2390457_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2390453_2391947_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2391957_2392890_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2393071_2394397_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2394431_2395787_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2395847_2397368_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2397522_2398254_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2398351_2399662_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2399677_2400589_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2400579_2401173_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2401234_2401621_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2401632_2402103_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2402114_2402738_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2402758_2405506_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2411984_2412935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2684921	2725590	4103252	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684921_2685872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685982_2686165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686264_2686861_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687044_2688136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688635_2689046_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689104_2689434_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689451_2691869_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691881_2692904_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692978_2693338_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693353_2693551_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693886_2694837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695031_2695481_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695477_2696428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696538_2697987_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698101_2698347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698486_2699437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699681_2700395_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700517_2700745_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701039_2701678_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701786_2702821_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702817_2703768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704183_2704708_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704711_2704981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705179_2706241_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706324_2707959_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707960_2708764_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708792_2709752_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709755_2711270_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711306_2712311_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712742_2713213_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713248_2713860_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713890_2714514_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714594_2716127_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716161_2717379_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717446_2718478_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718474_2719644_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719637_2720318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720479_2721322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721484_2722456_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722627_2723506_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723528_2724599_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724639_2725590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2781055	2853925	4103252	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781055_2781472_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781582_2782215_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782243_2782687_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782708_2783800_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783854_2784655_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784790_2785411_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785550_2786024_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787163_2788114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788110_2795772_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796012_2800059_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800371_2800953_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800949_2802248_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802327_2803356_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803616_2804567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804563_2805514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805830_2806436_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806489_2807803_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807877_2808348_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808347_2809136_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809146_2810799_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810886_2811837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812998_2813505_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813501_2814266_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814281_2814566_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814630_2815620_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815791_2816721_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816692_2817379_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817412_2817958_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818002_2819268_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819264_2820167_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821348_2822293_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822387_2823905_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823946_2825575_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825682_2826564_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829676_2830051_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830075_2830414_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830457_2832092_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832130_2833477_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833584_2835006_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835075_2835660_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835762_2836713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836847_2837954_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837964_2839062_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839206_2840412_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840418_2840940_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840936_2841419_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841424_2841676_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841656_2842142_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842277_2845739_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845756_2846641_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846650_2847082_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847328_2847832_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847909_2849310_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849384_2850260_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850256_2851264_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851731_2852037_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852127_2852718_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852908_2853925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2857068	2923879	4103252	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_076879566.1|2857068_2858019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858117_2859068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859064_2859859_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859890_2860595_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860669_2861470_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861466_2861874_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861870_2862512_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862504_2864505_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865765_2867097_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867093_2868044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869750_2870017_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870724_2871063_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875616_2876219_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876315_2877605_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877662_2878394_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878390_2879194_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879190_2880279_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880275_2881205_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881353_2882499_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882520_2883471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883801_2887623_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887779_2888448_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888452_2890126_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890144_2891464_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891468_2893784_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893839_2896008_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896004_2901185_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901283_2901598_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901825_2902071_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902165_2902684_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902783_2903989_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904104_2905502_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905618_2906197_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906269_2907661_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907828_2908779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909059_2909680_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909676_2910090_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910086_2911130_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911185_2911374_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911383_2912148_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912238_2912895_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912986_2913745_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913770_2915372_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915572_2916577_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916677_2916941_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917058_2917835_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918425_2919376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921759_2922872_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2922928_2923879_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	2954264	2997955	4103252	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2954264_2955215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955335_2956232_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958509_2960735_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960899_2961988_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961944_2962598_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962645_2963443_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963974_2964925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965005_2966154_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966210_2967161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967259_2967565_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967593_2968028_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968029_2969274_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969270_2969981_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969995_2970907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971269_2971674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971670_2972129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972135_2973044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973040_2973907_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973893_2974721_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974731_2975859_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976936_2978175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978216_2979479_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979485_2980238_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980289_2980475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980750_2981215_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981246_2981906_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982050_2984159_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984155_2985106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985209_2985830_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985933_2986674_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987808_2988933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988978_2989347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989588_2990539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991574_2992117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2992502_2993453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2993449_2994358_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994484_2995321_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995833_2996943_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2997004_2997955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	3377901	3431642	4103252	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3377901_3378852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379256_3379901_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379925_3380510_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380610_3381228_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381230_3382946_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382942_3383251_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383267_3383885_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383929_3384232_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384332_3385187_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385374_3385599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385768_3386041_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386458_3386866_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387235_3388030_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388130_3389366_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389434_3390451_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390462_3391839_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391835_3393032_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393028_3394567_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394563_3395823_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397763_3398714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399480_3400575_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400567_3401902_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401855_3402539_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402564_3403728_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403724_3404726_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404725_3405598_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405594_3406344_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406340_3407132_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407128_3408268_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408543_3409329_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409362_3410145_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410148_3410538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411677_3412541_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412576_3413665_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413661_3414612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414965_3417944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418870_3419749_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421697_3422648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422644_3423112_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423154_3423925_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423945_3424746_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424756_3426166_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426260_3427046_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427285_3428302_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428409_3428802_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428939_3429620_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429624_3430596_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430691_3431642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	3437797	3497097	4103252	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437797_3439561_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439672_3440551_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440663_3441479_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441482_3441734_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441818_3442835_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443165_3443387_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445747_3446665_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447162_3448371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448450_3450022_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450139_3451075_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451263_3452208_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452775_3458493_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458498_3459626_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459681_3460308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460579_3461596_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461691_3462402_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462398_3463388_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463483_3465115_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465117_3465855_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466010_3466883_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467232_3468372_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468368_3469028_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469099_3469732_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469761_3470280_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470290_3471400_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471446_3472301_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472302_3473205_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474427_3475378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477134_3478124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478299_3479088_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479084_3480116_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480134_3480698_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480753_3482274_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482537_3483242_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483249_3483978_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484092_3484467_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484509_3485799_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485795_3486965_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486961_3487801_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487860_3488796_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488808_3489759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489857_3490820_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490851_3491211_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491335_3492238_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492239_3494012_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494046_3494823_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496146_3497097_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011192	Bordetella pertussis strain H765 chromosome, complete genome	4103252	3512035	3570108	4103252	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512035_3512986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513114_3514248_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514291_3515197_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515199_3516900_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516896_3517817_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517824_3518802_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518860_3519895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521869_3522106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522232_3523096_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523184_3524006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524085_3524823_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524819_3525812_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525964_3526588_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526632_3527781_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530104_3531055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531395_3532346_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532444_3533395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533691_3534189_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534231_3536007_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536014_3536881_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536887_3537622_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538791_3539586_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539875_3540466_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540499_3541828_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541902_3543048_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543159_3544158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544120_3544555_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546071_3546956_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546952_3548158_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548154_3549015_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549127_3550918_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550958_3551603_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551624_3551933_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552098_3553385_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554818_3555769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557720_3558935_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559040_3560030_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560026_3560635_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560647_3561277_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561273_3561894_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561925_3562717_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563568_3564024_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564042_3564969_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565022_3566309_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567239_3568112_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568108_3569059_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569157_3570108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
