The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	27282	70036	4101757	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	77634	136108	4101757	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	164892	225403	4101757	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	233335	286923	4101757	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	390856	448365	4101757	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	590419	651610	4101757	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591866_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_010929851.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	656934	703125	4101757	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	709291	763221	4101757	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	814814	886827	4101757	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|814814_815765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|815863_816520_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|816667_819376_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|819385_820405_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|820401_821352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|821450_821939_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|821935_822619_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|822648_826104_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|826139_827000_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|827128_828046_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|828183_829164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|829223_831014_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|831010_831787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|831796_832315_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|832427_834698_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|834909_837141_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|837441_837771_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|837787_839272_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|839282_840785_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|840781_842794_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|842811_843120_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|843116_843764_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|843781_844270_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|844291_845365_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|845364_847692_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|847707_849075_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|849071_849566_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|849611_850868_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|850870_851494_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|851568_852045_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|852081_852441_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|852629_853787_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	894461	957542	4101757	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	976964	1047231	4101757	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985813_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992909_994184_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994337_994718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994725_995598_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995903_996284_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996494_997220_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011048_1013163_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036936_1038070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	1059449	1116831	4101757	tRNA,holin,transposase,protease	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061254_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070164_1071100_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071149_1073030_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073096_1073441_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079802_1082550_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082616_1084038_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084301_1085018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085102_1085420_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085460_1085874_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085875_1086235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086277_1087822_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087905_1088736_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088770_1089925_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089967_1090840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090956_1093245_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094451_1094916_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094942_1095893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096260_1097037_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097081_1097939_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097960_1098977_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099111_1100152_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100346_1102428_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102663_1104157_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104387_1105182_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105402_1106761_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106757_1107600_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107618_1109505_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109446_1109698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109742_1110375_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110393_1110996_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111147_1112098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112678_1113386_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113744_1114731_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114870_1115884_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115880_1116831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	1316902	1382331	4101757	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1316902_1317853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318621_1319260_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320149_1320596_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320677_1321379_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321379_1322147_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322143_1323382_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323381_1324308_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324410_1325526_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325541_1326492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326845_1327427_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327423_1328257_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328467_1329781_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329957_1330839_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330858_1331710_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331762_1332851_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332961_1334089_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334323_1334935_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335033_1335984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336205_1336583_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336730_1337228_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337224_1337752_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337885_1338701_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338713_1339895_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339942_1340836_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340962_1341433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341558_1342386_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342414_1343191_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343187_1343463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343477_1343942_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343953_1344655_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1344764_1345265_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345347_1346526_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348153_1348489_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348676_1350125_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350182_1350527_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350633_1351173_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351265_1352216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1352314_1353265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353363_1353771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354003_1354435_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354616_1355021_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356257_1356581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356583_1357471_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357503_1357929_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358000_1358354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358593_1359100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359138_1360470_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360529_1361345_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361341_1362196_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365258_1367802_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369168_1370923_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370919_1373040_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373044_1375240_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375236_1378578_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381380_1382331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	1446929	1502417	4101757	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446929_1447880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449081_1449528_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449520_1450996_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450992_1451748_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451740_1452751_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452740_1454417_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454729_1455062_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455075_1455471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455480_1455807_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455803_1456130_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456056_1457079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457075_1457426_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457473_1457902_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457909_1459283_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459423_1459801_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460063_1461371_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461431_1462262_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462258_1462747_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462788_1464309_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464352_1464829_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465632_1468230_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468259_1469081_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469807_1470557_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470740_1471619_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471716_1472433_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472447_1473008_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473174_1473939_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473958_1474816_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474812_1476012_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476051_1477386_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477438_1479775_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479900_1480464_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480472_1481564_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481635_1482091_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482091_1482886_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482882_1484064_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484050_1484656_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484652_1485426_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485437_1486265_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486426_1488790_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488857_1489577_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489700_1490126_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490160_1491111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491228_1492155_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492220_1493378_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493358_1493826_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493973_1494924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494940_1495375_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495364_1495715_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495911_1497066_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497062_1498235_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498282_1499176_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499221_1499659_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499718_1500408_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500417_1501368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501466_1502417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	1794987	1843002	4101757	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1794987_1795938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1796036_1796987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1797085_1799686_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1799792_1800797_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1800905_1802246_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1802286_1803315_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1803510_1804056_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1804052_1804613_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1804711_1805662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1805699_1806287_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1806304_1806688_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1808047_1809340_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1809474_1810515_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1810612_1811629_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1811896_1812544_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1812669_1813428_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1813412_1814192_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1814209_1815094_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1815090_1815870_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1815974_1816574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1816862_1817615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1817733_1819134_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1819157_1819556_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1819731_1819932_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1820070_1820799_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1820932_1822348_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1822351_1823215_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1823227_1823977_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1824159_1826175_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1826156_1826825_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1827599_1828550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828698_1829037_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829094_1829256_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829287_1829488_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829753_1832327_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1832397_1834947_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837497_1837986_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838077_1839229_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839282_1840104_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840142_1841372_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841500_1841941_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1842051_1843002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	1904564	2035625	4101757	tRNA,transposase,protease	Klosneuvirus(18.75%)	119	NA	NA
WP_005013747.1|1904564_1905515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905639_1906449_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1906649_1907600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908873_1910091_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1911147_1912050_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1912126_1912999_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1913129_1913498_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1913555_1914602_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914797_1916054_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1916058_1917396_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1917545_1918502_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1918604_1919537_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1919652_1919973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1919965_1920325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1920372_1921947_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1921999_1922944_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1922961_1923792_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1923784_1925419_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925415_1926771_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927677_1929255_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929258_1930533_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930630_1931005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1932720_1933854_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1933891_1934497_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934493_1935312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935383_1938008_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937994_1938249_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1938315_1938897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939200_1939461_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939626_1940250_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940249_1941023_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941019_1942228_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942253_1942727_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1942800_1943751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1943849_1945199_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945964_1946720_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1946812_1949695_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1950017_1950443_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950470_1951619_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951615_1952122_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1952128_1953424_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1953482_1954769_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1954770_1955409_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1955411_1956572_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956598_1957954_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957957_1959028_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959166_1959403_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959490_1960597_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960562_1961867_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1961885_1962785_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1962968_1964126_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1964202_1965498_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1965611_1966151_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1966428_1966641_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1966660_1968691_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1968716_1968911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1969376_1971659_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1972068_1972368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1972652_1973066_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1973025_1973976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974074_1975025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1975224_1976310_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1976325_1977087_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1977083_1978043_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1978105_1978606_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1978638_1979382_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1979477_1979717_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1979730_1979883_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979968_1981459_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1981550_1982489_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1982485_1982662_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1982664_1983327_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1984948_1985092_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1985088_1986063_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1986229_1987180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987176_1988451_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1988554_1989748_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1989744_1990398_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990394_1991831_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1991818_1992178_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1992992_1993133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1993150_1994101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995146_1997012_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997269_1998790_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998877_1999528_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2000476_2001772_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001793_2002678_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002776_2003652_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003641_2003998_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2004128_2005103_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005232_2005412_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005509_2006034_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006044_2006881_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006993_2007365_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007361_2007913_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007928_2009620_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009668_2010349_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010596_2011061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011230_2012160_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012172_2012820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012893_2014711_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014794_2015745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2016397_2017348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017366_2017714_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2017742_2019182_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019200_2019596_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2019770_2020379_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2020391_2021210_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021161_2022136_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022164_2023226_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023222_2025439_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025452_2025911_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026068_2026413_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026569_2027475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027561_2028575_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2030554_2031571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2031713_2033066_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2033240_2033537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2034674_2035625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2047121	2111490	4101757	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2047121_2048072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2048293_2049244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049342_2050308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050445_2051345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053939_2055427_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055437_2056634_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056706_2058026_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058022_2058898_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2058928_2060077_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060094_2060409_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060430_2061153_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061152_2061971_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061975_2062503_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2062508_2063765_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064123_2065263_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065340_2066213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067083_2068034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067993_2068629_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068988_2070311_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2070629_2071451_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2072875_2073448_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073487_2075317_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075279_2076338_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076375_2076837_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076921_2077668_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079158_2082389_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082455_2083787_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084039_2084414_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084516_2085695_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085705_2086296_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086406_2087213_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2087238_2088033_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089033_2090008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090166_2090679_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090835_2091807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093551_2094358_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2094354_2095656_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2095606_2096371_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096484_2097255_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2097339_2098527_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098599_2098974_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2099074_2100337_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100333_2101191_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101363_2102365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102816_2103767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105282_2106482_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106850_2107087_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107150_2107318_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2107431_2109237_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2109490_2110441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110539_2111490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2297958	2359306	4101757	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297958_2298909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299025_2299745_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299917_2300904_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300904_2301387_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301390_2302674_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302670_2303609_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303605_2305315_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305324_2306572_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308182_2309472_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2310609_2311368_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2312044_2312788_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312862_2313603_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313798_2314635_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314685_2315456_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315505_2316558_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316554_2317181_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317177_2318212_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318390_2319407_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319505_2320456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323196_2324486_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324604_2325042_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325085_2326294_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326440_2326905_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326928_2327879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328863_2329637_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329633_2330632_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330716_2331493_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331648_2333253_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333633_2334758_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334884_2335508_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335504_2337406_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337454_2338249_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338261_2339263_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339259_2339766_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339758_2340607_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340704_2341247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341290_2342241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342396_2342723_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342719_2343004_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343000_2343480_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343476_2345105_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345101_2345446_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345445_2348379_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349537_2350488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350586_2350883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350989_2351907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351911_2352625_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352638_2353610_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355329_2355710_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355713_2356901_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2357324_2358062_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358355_2359306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2380097	2449753	4101757	transposase	Tetraselmis_virus(10.0%)	53	NA	NA
WP_005012067.1|2380097_2381048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381600_2383226_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383275_2384310_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384312_2385659_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2385655_2387170_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387160_2388171_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388644_2389586_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389594_2390563_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392102_2393071_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393248_2394238_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394284_2395043_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395232_2395970_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396068_2397019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397203_2397986_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397979_2398681_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398920_2399523_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2400849_2401800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401796_2403353_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403345_2404119_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404177_2405128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405209_2406385_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406398_2408456_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408452_2409478_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_003811224.1|2410397_2411288_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2411284_2413369_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2413400_2414570_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2414611_2415352_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2415351_2416122_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2416446_2416614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2416977_2417763_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2417789_2419874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2420041_2421997_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2422320_2422821_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2422919_2424446_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2424583_2425471_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2425485_2426439_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2426490_2428581_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2428596_2428983_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2431676_2432480_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2433773_2434676_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2434740_2435517_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2435838_2436888_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2437011_2438682_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2438686_2439481_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012808.1|2439579_2440530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|2440551_2441772_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|2441957_2443370_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|2443433_2444501_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|2444500_2445988_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|2445997_2446942_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|2447101_2447800_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|2447877_2448783_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|2448802_2449753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2533953	2585125	4101757	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2533953_2534904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535002_2535773_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2535769_2536441_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536437_2537079_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537091_2538012_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538172_2539333_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539374_2540325_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2540989_2541190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541312_2543007_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543128_2543398_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2543513_2543912_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2543922_2544879_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545015_2545561_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2545581_2547531_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2547918_2548695_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2548700_2549093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2549514_2550465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2550461_2551559_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2551590_2552541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554322_2555564_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2555575_2556349_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556375_2557326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557424_2558207_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558295_2559522_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2560247_2561633_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2561651_2562257_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562253_2564110_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564106_2564907_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2564921_2566115_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566182_2567157_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567279_2568503_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2568613_2570818_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571112_2571772_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2571779_2571986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572324_2573080_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2573095_2573257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2573350_2573866_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574138_2574456_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2574400_2575045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575170_2576526_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2576572_2577913_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578014_2578647_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2578646_2581007_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581048_2582008_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2581994_2582681_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2582677_2583010_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2583125_2584076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2584174_2585125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2683420	2724089	4101757	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2683420_2684371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684481_2684664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2684763_2685360_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685543_2686635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687134_2687545_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2687603_2687945_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2687950_2690368_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690380_2691403_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691477_2691837_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2691852_2692050_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692385_2693336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693530_2693980_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2693976_2694927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695037_2696486_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2696600_2696882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2696985_2697936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698180_2698894_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699016_2699244_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699538_2700177_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2700285_2701320_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701316_2702267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2702682_2703207_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703210_2703480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2703678_2704740_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2704823_2706458_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706459_2707263_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707291_2708251_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708254_2709769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2709805_2710810_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711241_2711712_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2711747_2712359_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712389_2713013_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713093_2714626_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2714660_2715902_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2715945_2716977_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2716973_2718143_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2718136_2718817_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2718978_2719821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2719983_2720955_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721126_2722005_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722027_2723098_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723138_2724089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2779554	2852424	4101757	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2779554_2779971_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780081_2780714_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2780742_2781186_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781207_2782299_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2782353_2783154_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783289_2783910_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2784049_2784523_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2785662_2786613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2786609_2794271_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794511_2798558_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2798870_2799452_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799448_2800747_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2800826_2801855_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802115_2803066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803062_2804013_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804329_2804935_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2804988_2806302_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806376_2806847_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2806846_2807635_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2807645_2809298_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809385_2810336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811497_2812004_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812000_2812765_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2812780_2813065_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813129_2814119_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814290_2815220_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815191_2815878_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2815911_2816457_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816501_2817767_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2817763_2818666_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2819847_2820792_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2820886_2822404_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822445_2824074_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824181_2825063_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828175_2828550_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2828574_2828913_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2828956_2830591_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2830629_2831976_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2832083_2833505_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2833574_2834159_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834261_2835212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835346_2836453_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836463_2837561_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2837705_2838911_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2838917_2839439_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2839435_2839927_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2839923_2840175_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840155_2840641_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2840776_2844238_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844255_2845140_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845149_2845581_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2845827_2846331_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2846408_2847809_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2847883_2848759_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2848755_2849763_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850230_2850536_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2850626_2851217_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851407_2852424_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2855567	2922377	4101757	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2855567_2856518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2856616_2857567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2857563_2858358_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858389_2859094_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859168_2859969_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2859965_2860373_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860369_2861011_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861003_2863004_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864264_2865596_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2865592_2866543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868249_2868516_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869223_2869562_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874114_2874717_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2874813_2876103_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876160_2876892_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2876888_2877692_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2877688_2878777_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2878773_2879703_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2879851_2880997_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881018_2881969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882299_2886121_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886277_2886946_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2886950_2888624_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2888642_2889962_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2889966_2892282_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2892337_2894506_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894502_2899692_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2899781_2900096_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900323_2900569_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2900663_2901182_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901281_2902487_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2902602_2904000_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904116_2904695_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2904767_2906159_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906326_2907277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2907557_2908178_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908174_2908588_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2908584_2909628_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2909683_2909872_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2909881_2910646_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2910736_2911393_+	adenylate kinase	NA	NA	NA	NA	NA
WP_077071150.1|2911484_2912243_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912268_2913870_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914070_2915075_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915175_2915439_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2915556_2916333_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2916923_2917874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920257_2921370_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921426_2922377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	2944669	2996454	4101757	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005012067.1|2944669_2945620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814555.1|2945815_2947288_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2947298_2947709_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2947772_2948819_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2948925_2949804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2949817_2951014_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2951090_2952767_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2952763_2953714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2953834_2954731_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957008_2959234_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959398_2960487_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960443_2961097_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961144_2961942_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962473_2963424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2963498_2964653_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2964709_2965660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2965758_2966064_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966092_2966527_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966528_2967773_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2967769_2968480_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968494_2969406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2969768_2970173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970169_2970628_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2970634_2971543_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2971539_2972406_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972392_2973220_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973230_2974358_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975435_2976674_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2976715_2977978_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2977984_2978737_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2978788_2978974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979249_2979714_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2979745_2980405_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980549_2982658_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2982654_2983605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2983708_2984329_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2984420_2985173_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986307_2987432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987477_2987846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988087_2989038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990073_2990616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991001_2991952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2991948_2992914_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2992983_2993820_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994332_2995442_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995503_2996454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	3376400	3430141	4101757	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3376400_3377351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3377755_3378400_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378424_3379009_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379109_3379727_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3379729_3381445_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381441_3381750_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3381766_3382384_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382428_3382731_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3382831_3383686_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3383873_3384098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384267_3384540_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3384957_3385365_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3385734_3386529_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3386629_3387865_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3387933_3388950_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3388961_3390338_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390334_3391531_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391527_3393066_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393062_3394322_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396262_3397213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3397979_3399074_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399066_3400401_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400354_3401038_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401063_3402227_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3402223_3403225_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403224_3404097_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404093_3404843_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404839_3405631_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3405627_3406767_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407042_3407828_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407861_3408644_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3408647_3409037_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3410176_3411040_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3411075_3412164_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412160_3413111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3413464_3416443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417369_3418248_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420196_3421147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421143_3421611_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3421653_3422424_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3422444_3423245_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423255_3424665_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3424759_3425545_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3425784_3426801_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3426908_3427301_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427438_3428119_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428123_3429095_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429190_3430141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	3436296	3495596	4101757	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436296_3438060_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438171_3439050_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439162_3439978_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3439981_3440233_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440317_3441334_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3441664_3441886_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444246_3445164_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3445661_3446870_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3446949_3448521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3448638_3449574_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3449762_3450707_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3451274_3456992_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3456997_3458125_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458180_3458807_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3459078_3460095_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460190_3460901_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3460897_3461887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3461982_3463614_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3463616_3464354_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464509_3465382_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3465650_3466871_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3466867_3467527_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3467598_3468231_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468260_3468779_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3468789_3469899_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3469945_3470800_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3470801_3471704_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3472926_3473877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3475633_3476623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3476619_3476778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3476798_3477587_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3477583_3478615_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3478633_3479197_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479252_3480773_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481036_3481741_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3481748_3482486_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3482591_3482966_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483008_3484298_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484294_3485464_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485460_3486300_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486359_3487295_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487307_3488258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488356_3489319_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489350_3489710_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3489834_3490737_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3490738_3492511_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492545_3493322_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3494645_3495596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	3510534	3568607	4101757	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3510534_3511485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3511613_3512747_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3512790_3513696_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3513698_3515399_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515395_3516316_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516323_3517301_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517359_3518394_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3520368_3520605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3520731_3521595_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3521683_3522505_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3522584_3523322_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3523318_3524311_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524424_3525087_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525131_3526280_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3528603_3529554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3529894_3530845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530943_3531894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532190_3532688_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3532730_3534506_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534513_3535380_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535386_3536121_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537290_3538085_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538374_3538965_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3538998_3540327_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540401_3541547_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3541658_3542657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3542619_3543054_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3544570_3545455_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545451_3546657_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3546653_3547514_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3547626_3549417_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549457_3550123_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550123_3550432_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3550597_3551884_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3553317_3554268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556219_3557434_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557539_3558529_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558525_3559134_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559146_3559776_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3559772_3560393_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560424_3561216_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3562067_3562523_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3562541_3563468_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563521_3564808_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3565738_3566611_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3566607_3567558_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3567656_3568607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011191	Bordetella pertussis strain H754 chromosome, complete genome	4101757	4023928	4077360	4101757	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_077071152.1|4023928_4024879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025048_4026275_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026474_4027341_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027333_4028296_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028396_4029347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029445_4030396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030494_4031445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031441_4032935_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032931_4036039_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036035_4039104_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039100_4040351_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4040531_4041293_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4041325_4041976_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041978_4042818_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043058_4043802_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4043884_4044232_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044329_4045172_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045216_4046104_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046130_4046319_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046416_4047874_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047860_4049387_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049405_4049873_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4049872_4050895_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4051015_4051735_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4051810_4052911_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052912_4054103_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054222_4055239_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4055557_4056229_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056225_4057134_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057345_4057993_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061844_4062921_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062931_4063741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063830_4064604_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4064786_4065737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4065625_4066648_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4066637_4067792_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4067831_4069244_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4069368_4070235_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4070236_4071061_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071057_4071819_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4071899_4072586_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4072759_4073767_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4073763_4074543_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4074600_4075863_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4076409_4077360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
