The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	27282	70036	4109506	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	77634	136108	4109506	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	164892	225403	4109506	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	233335	286925	4109506	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|265572_266910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	555310	614610	4109506	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	620765	674506	4109506	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656584_657844_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660568_661945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666808_667033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668522_669140_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673555_674506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	723444	763394	4109506	transposase,tRNA,protease,integrase	Pseudomonas_phage(33.33%)	30	720692:720710	740580:740598
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728926_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736409_737360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749740_749896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750949_751690_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751916_752864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754251_755202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755219_755432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755395_756211_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756343_757783_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757796_758138_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758192_759848_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759999_761010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761142_761916_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762443_763394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	773321	820939	4109506	protease,holin,tRNA,transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773321_774272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774410_775163_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775401_777126_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777145_778405_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778419_779514_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779510_781637_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781649_782330_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782607_783981_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783982_785002_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785065_786037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786101_787052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787150_787993_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787992_788328_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788398_789817_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790096_791137_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791216_791468_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791578_792742_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793025_793880_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793876_794767_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794809_795721_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795747_796440_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796454_797435_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797447_799589_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799637_800606_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800596_801265_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801225_802161_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802157_803054_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803050_803773_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803763_803928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804101_804605_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804881_805997_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806139_806604_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806751_807291_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807312_808647_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808660_808966_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809390_809972_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810053_811004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811102_812053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812493_813399_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813454_815059_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815315_816821_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816835_817300_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817589_818540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|818557_818746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818702_819233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819232_819544_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819988_820939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1005154	1099191	4109506	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005154_1006105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006964_1007135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007487_1008489_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008491_1009688_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009708_1010512_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010592_1010889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012388_1013138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013159_1014032_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014060_1014840_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014873_1015671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018325_1018718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021314_1022004_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022864_1023815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026295_1027516_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027463_1028366_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029252_1030539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030577_1031951_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034556_1035105_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035246_1036722_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038714_1039503_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041059_1042070_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042113_1043040_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043747_1043894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043911_1044862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044906_1047333_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047381_1048074_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051339_1052686_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052713_1053463_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053476_1054259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054451_1055402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055463_1056573_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057991_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058953_1059904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059921_1060092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061867_1062818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065732_1066485_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067300_1068251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072927_1074190_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074231_1075470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076547_1077675_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081228_1082179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082196_1082361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086294_1087245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087301_1088456_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088530_1089481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091467_1092556_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092720_1094946_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098073_1098223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098240_1099191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1129577	1200548	4109506	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1129577_1130528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130584_1131697_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134080_1135031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135621_1136398_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136515_1136779_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136879_1137884_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138084_1139686_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139711_1140470_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140561_1141218_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141308_1142073_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142082_1142271_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142326_1143370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143366_1143780_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143776_1144397_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144677_1145628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145795_1147187_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147259_1147838_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147954_1149352_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149467_1150673_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150772_1151291_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151385_1151631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151858_1152173_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152262_1157452_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157448_1159617_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159672_1161988_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161992_1163312_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163330_1165004_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165008_1165677_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165833_1169655_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169809_1169968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169985_1170936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170957_1172103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172251_1173181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173177_1174266_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174262_1175066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175062_1175794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175851_1177141_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177237_1177840_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182393_1182732_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183439_1183706_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185412_1186363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186359_1187691_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188951_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192861_1193566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194388_1195339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197003_1199340_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199531_1200548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1241619	1323754	4109506	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1241619_1242570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1242657_1244310_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1244320_1245109_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1245108_1245579_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1245653_1246967_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1247020_1247626_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1247942_1248893_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248889_1249840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250100_1251129_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251208_1252507_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252503_1253085_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253397_1257444_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1257684_1265346_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265342_1266293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267432_1267906_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268045_1268666_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268801_1269602_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269656_1270748_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270769_1271213_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271241_1271874_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271984_1272401_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272393_1273086_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273192_1273567_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273643_1274453_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274548_1275493_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275531_1276503_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276593_1277031_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277089_1277971_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278974_1279835_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279867_1281250_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281246_1282266_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282638_1283133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283140_1283881_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283961_1285566_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285605_1286394_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287596_1288685_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289565_1290378_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290390_1290699_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290816_1292547_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292548_1293694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1327865	1368534	4109506	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328856_1329927_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329949_1330828_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330999_1331971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332133_1332976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333137_1333818_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1333811_1334981_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1334977_1336009_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1336052_1337294_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337328_1338861_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338941_1339565_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339595_1340207_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340242_1340713_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341144_1342149_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342185_1343700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343703_1344663_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344691_1345495_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345496_1347131_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347214_1348276_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348474_1348744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348747_1349272_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349687_1350638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350634_1351669_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351777_1352416_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352710_1352938_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353060_1353774_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354018_1354969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1355072_1355354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355468_1356917_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357027_1357978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357974_1358424_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358618_1359569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1359904_1360102_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1360117_1360477_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1360551_1361574_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1361586_1364004_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1364009_1364351_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1364409_1364820_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1365319_1366411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1366594_1367191_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1367290_1367473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1367583_1368534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1448211	1500364	4109506	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449179_1449332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470947_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476909_1477554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478697_1478859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499413_1500364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1544289	1604201	4109506	tRNA,transposase	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1544289_1544778_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544895_1545474_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545579_1545948_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546046_1546997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547003_1548116_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548802_1550005_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550040_1550187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550208_1552869_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552881_1556286_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556953_1559179_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559225_1559552_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559602_1560211_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560309_1561260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1561358_1562309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562378_1563143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563139_1563739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563842_1564694_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564753_1565380_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565376_1566327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566425_1567538_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567527_1568529_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568634_1570146_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570142_1571447_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571558_1572119_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572386_1572941_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573396_1573612_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573866_1576464_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576460_1577648_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578306_1578921_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579009_1580137_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580148_1581054_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581946_1582897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583078_1583831_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583899_1584559_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584555_1585284_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585296_1587576_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587600_1587804_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587845_1588478_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588613_1589531_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589527_1590241_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590478_1591249_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591253_1591853_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592097_1593588_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593646_1593931_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594068_1594224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594496_1595423_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595559_1596300_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596466_1597843_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598024_1598930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600581_1602384_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602510_1603152_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603250_1604201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1649373	1704964	4109506	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649373_1650324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650382_1651156_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651148_1652705_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652701_1653652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654978_1655581_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655820_1656522_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656515_1657298_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657482_1658433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658531_1659269_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659458_1660217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660263_1661253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661430_1662399_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663938_1664907_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664915_1665857_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666330_1667341_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667331_1668846_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668842_1670189_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670191_1671226_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671275_1672901_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673453_1674404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674508_1675456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675509_1677324_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677316_1677991_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678120_1681195_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681208_1681508_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681822_1682446_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682689_1683559_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683536_1684481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684566_1685493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685605_1686385_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686375_1687572_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687602_1688553_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688774_1689464_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689528_1690284_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690335_1691328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691337_1692291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692406_1693369_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694770_1695199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695195_1696146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696439_1697177_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697600_1698788_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698791_1699172_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700891_1701863_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701876_1702590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702594_1703512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703618_1703915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704013_1704964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	1908348	1964132	4109506	tRNA,transposase	Faecalibacterium_phage(25.0%)	49	NA	NA
WP_005012067.1|1908348_1909299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1909380_1909929_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1909931_1910270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1910664_1913256_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1913322_1914066_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1914078_1914465_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1914471_1914762_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1914897_1915197_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1915265_1916168_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1916171_1916942_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1917327_1917777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1917844_1918795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926318.1|1919156_1920068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1920293_1921811_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1923042_1924005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1924093_1924342_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1930899_1931343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1931407_1931680_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1931676_1932624_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1932805_1934200_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1934222_1934618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1934614_1935874_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1935995_1937051_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1937053_1937713_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1937728_1940386_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940463_1941666_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941662_1942175_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942297_1942735_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943011_1943962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944060_1945011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945264_1947070_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947183_1947351_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947414_1947651_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948019_1949219_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005013747.1|1950734_1951685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1952170_1952347_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1953031_1954003_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1954006_1954861_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1954879_1955701_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1955732_1956527_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1956575_1957181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1957138_1957972_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1958257_1959763_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1959804_1960587_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1960656_1961103_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1961099_1962326_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1962318_1962723_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1962882_1963185_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1963181_1964132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2018831	2061316	4109506	transposase	Erysipelothrix_phage(20.0%)	39	NA	NA
WP_005012067.1|2018831_2019782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019880_2020177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020351_2021704_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021846_2022863_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024842_2025856_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2025942_2026848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027004_2027349_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027506_2027965_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2027978_2030195_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030191_2031253_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031281_2032256_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032207_2033026_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033038_2033647_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2033821_2034217_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034235_2035675_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035703_2036051_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036069_2037020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037672_2038623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038706_2040524_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040597_2041245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041257_2042187_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042356_2042821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043068_2043749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043797_2045489_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045504_2046056_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046052_2046424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046536_2047373_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047383_2047908_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048005_2048185_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048314_2049289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049419_2049776_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049765_2050641_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050739_2051624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051645_2052941_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053889_2054540_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2054627_2056148_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056405_2058271_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059316_2060267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060365_2061316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2067286	2119083	4109506	protease,tRNA,transposase	Klosneuvirus(22.22%)	50	NA	NA
WP_005012067.1|2067286_2068237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2068254_2068509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2068403_2069378_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2069374_2069518_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2071139_2071802_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2071804_2071981_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2071977_2072916_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2073007_2074498_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2074583_2074736_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2074749_2074989_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2075084_2075828_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2075860_2076361_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2076423_2077383_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2077379_2078141_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2078156_2079242_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2079441_2080392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080351_2080765_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081049_2081349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081758_2084041_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2084726_2086757_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086776_2086989_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087266_2087806_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087919_2089215_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089291_2090449_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090632_2091532_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091550_2092855_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092820_2093927_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094014_2094251_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094389_2095460_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095463_2096819_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_077069010.1|2096845_2098006_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098008_2098647_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2098648_2099935_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2099993_2101289_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101295_2101802_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101798_2102947_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2102974_2103400_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103722_2106605_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106697_2107453_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108218_2109568_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109666_2110617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110715_2111666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111739_2112213_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112238_2113447_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113443_2114217_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114216_2114840_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115005_2115266_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115569_2116151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116217_2116472_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116458_2119083_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2146866	2212415	4109506	protease,tRNA,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146866_2147817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148017_2148827_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2148951_2149902_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149898_2150792_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150916_2151111_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151110_2151452_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151461_2153324_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153453_2153966_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2153968_2154292_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154293_2154704_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154741_2155953_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2155970_2156483_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156698_2157190_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157442_2159479_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159556_2160759_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160887_2161538_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163095_2164046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164616_2164829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164846_2165578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165612_2166254_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166246_2166915_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169127_2169904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169925_2171083_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171079_2171511_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2171507_2172311_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172324_2172726_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172792_2173764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173829_2175053_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175280_2176231_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176354_2178808_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2178996_2180301_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180405_2181059_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181061_2182372_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2182568_2183129_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183240_2183441_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183786_2184353_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184436_2184640_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184946_2185267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185308_2185590_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185664_2186921_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187303_2187633_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189203_2190025_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190024_2191164_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191170_2192067_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2192063_2193989_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194348_2196961_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197013_2199314_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199310_2200519_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2200780_2201155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201151_2202102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202200_2204195_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204254_2205220_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205209_2208071_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208073_2208580_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208684_2209893_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209894_2210833_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2210994_2211468_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211464_2212415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2298592	2362169	4109506	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_005012067.1|2298592_2299543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2299641_2300592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2300893_2301370_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2301993_2303631_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2303661_2304975_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2305108_2305426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2305526_2306849_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2306845_2307796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2308325_2309348_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2309376_2310207_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2310223_2311921_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2311985_2313062_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2313221_2314085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2314115_2314685_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2314701_2315553_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2316610_2317492_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2317566_2318556_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2318618_2319569_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2319631_2320489_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2320548_2321037_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2322609_2323800_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2323796_2325383_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2325401_2326469_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2326573_2328118_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2328537_2330112_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2330219_2331236_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2331232_2332072_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2332076_2333714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2333710_2334661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2334678_2334822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2334803_2336078_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2336107_2336398_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2336470_2337484_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2337503_2338766_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2338768_2339692_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2339688_2341182_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2341192_2342125_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2342306_2343632_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2343666_2345010_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2345082_2346603_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2346757_2347489_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2347556_2348897_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2348912_2349824_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2349814_2350408_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2350469_2350856_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2350867_2351338_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2351349_2351973_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2351993_2354741_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2361218_2362169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2508159	2563639	4109506	tRNA,transposase	Planktothrix_phage(40.0%)	51	NA	NA
WP_005012067.1|2508159_2509110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509589_2510246_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510260_2511928_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511930_2512560_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512771_2513866_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514010_2514823_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514826_2516530_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516580_2517711_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517897_2518974_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519055_2519706_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519720_2521124_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521407_2522226_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522222_2522927_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523826_2524942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2524975_2525350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525372_2526530_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526542_2526776_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527410_2530380_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530394_2530604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530755_2531385_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531381_2533472_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533495_2534176_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534172_2534733_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534739_2535837_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2535989_2536583_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536579_2537872_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537885_2538428_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538437_2539274_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539307_2540369_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540410_2541463_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541478_2541781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541922_2542873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2542890_2543055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2543051_2544746_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544742_2545828_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545875_2546775_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546785_2547430_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548451_2551694_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551704_2552859_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553085_2554048_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554146_2555097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555195_2556146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2556244_2557195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2557204_2557894_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2557953_2558391_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2558436_2559330_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2559377_2560550_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2560546_2561701_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2561897_2562248_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2562237_2562672_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2562688_2563639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2609731	2676231	4109506	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2609731_2610682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2611051_2611624_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2611626_2612637_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2612629_2613130_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2613140_2613482_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2613493_2614285_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2614301_2614571_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2614593_2615382_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2615428_2616445_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2616661_2618104_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2618282_2619902_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077069011.1|2620022_2621843_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2621921_2623454_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2623487_2625134_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2625203_2626226_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2626243_2627377_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2627379_2628069_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2628068_2628854_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2628897_2629662_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2629700_2631122_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2631187_2631892_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2631939_2632359_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2632371_2632779_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2632962_2633673_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2633799_2634090_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2634107_2634590_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2639095_2640250_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2640555_2641572_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2641818_2642607_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2642673_2643354_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2643350_2644121_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2644219_2645170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2645225_2646143_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2646153_2647332_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2647351_2648347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2649935_2650544_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2650531_2651572_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2651589_2652552_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2652548_2653742_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2653738_2654536_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2654561_2655548_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2655566_2657606_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2657807_2658488_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2658501_2659413_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2659409_2659988_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2660126_2661032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2661039_2664459_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2664446_2667047_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2668002_2668635_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2669028_2669787_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2669783_2670986_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2671173_2672124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2673031_2674177_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2674163_2674919_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2675035_2675215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2675280_2676231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2875619	2948944	4109506	protease,tRNA,transposase	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2875619_2876975_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2878453_2879176_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2879230_2880214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2880343_2881294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2881290_2882193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2882280_2883039_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2883051_2884143_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2884240_2885668_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2885897_2887112_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2887157_2890028_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2892438_2892927_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2893052_2895749_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2895903_2898186_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2898359_2898983_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2899081_2900032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900078_2900633_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900700_2901546_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901615_2902584_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2902583_2903447_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2906279_2910206_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2910941_2914172_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2914453_2915281_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2915314_2916010_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2916002_2917283_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2917292_2918270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2918251_2919952_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2920054_2921158_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2921188_2921944_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2921950_2923471_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923513_2923816_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923812_2924445_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924523_2926389_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926385_2927180_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927208_2928324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929228_2930107_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930106_2930931_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2931098_2932049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932261_2935111_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935092_2935821_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2935961_2937425_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937421_2937793_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937810_2939124_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939160_2939619_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2939573_2939714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2939731_2940682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2940678_2941692_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2941831_2942818_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2943176_2943884_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2944464_2945415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945566_2946169_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946187_2946820_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946864_2947116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947057_2948944_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 25
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	2960669	3010282	4109506	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2960669_2961620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961646_2962111_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963317_2965606_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965722_2966595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966637_2967792_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967826_2968657_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968740_2970285_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970327_2970687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970688_2971102_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971142_2971460_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971544_2972261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972524_2973946_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2974012_2976760_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2977092_2978109_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2978444_2979086_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2979176_2980613_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2980770_2981844_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2981840_2982977_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2983121_2983466_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2983532_2985413_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2985462_2986398_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2986730_2987747_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2988684_2990112_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2990108_2991131_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2991120_2991594_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2991734_2992622_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2992618_2994262_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2994258_2995308_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2996096_2997113_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2997212_2997845_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2997853_2998243_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2998295_2999348_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3000211_3001918_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3001991_3002492_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3002506_3004564_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3004590_3004884_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3004985_3005933_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3005945_3006821_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3006941_3007502_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3007536_3007860_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3008295_3009033_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3009331_3010282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	3031233	3103728	4109506	transposase	Bacillus_virus(16.67%)	57	NA	NA
WP_010929584.1|3031233_3032184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3032226_3033402_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3033623_3035414_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3035426_3037088_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3037100_3039806_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3040098_3041853_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3041849_3042476_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3042472_3043324_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3043399_3045514_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3045700_3046315_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3046460_3046712_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3046781_3048164_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_029443805.1|3052148_3053066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3053117_3053849_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3053908_3054481_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3055989_3057006_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3057143_3058193_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3058297_3059248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3059343_3060069_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3060279_3060660_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3060965_3061838_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3061845_3062226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3062379_3063654_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3065141_3066050_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3066847_3067912_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3069748_3070750_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3070972_3071614_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3071696_3073523_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3073766_3074696_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3074695_3075445_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3075516_3076431_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3076450_3077596_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3077656_3078568_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3078648_3079599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3079697_3080282_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3080316_3081306_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3081302_3082244_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3082240_3083461_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3083503_3083818_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3084009_3084369_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3084370_3086086_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3086273_3086945_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3086959_3088288_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3088284_3089184_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3089270_3090356_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3090348_3091482_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3091481_3094163_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3094533_3095115_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3095240_3095966_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3095962_3096640_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3096855_3098037_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3098809_3098992_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3099021_3099972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3100101_3100494_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3100770_3101682_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3101806_3102781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3102777_3103728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	3117235	3170753	4109506	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3117235_3118186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3118298_3118550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3119055_3120174_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3120293_3120506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3120665_3120887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3120939_3121890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3123066_3124437_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3124469_3125261_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3125273_3126329_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3126354_3127230_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3127335_3127584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3127618_3129073_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3129069_3129591_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3129619_3130972_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3131195_3134084_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3136228_3137530_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3137544_3138261_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3138542_3139223_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3139234_3139402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3139510_3139657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3139750_3140410_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3140808_3142641_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3142637_3143588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3144751_3146467_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3146477_3146969_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3147041_3148058_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3148225_3149005_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3149023_3149551_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3149844_3150114_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3150204_3152364_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3152484_3153204_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3153200_3154151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3154291_3155509_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3155502_3156114_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3156747_3157725_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3157868_3158615_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3158636_3159083_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3159870_3162102_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3162124_3162925_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3163206_3164439_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3164549_3165539_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3165569_3166958_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3168556_3169540_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3169736_3170753_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	3235211	3305263	4109506	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3235211_3236162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236158_3237178_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237187_3239896_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240043_3240700_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240798_3241749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3241896_3242790_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3242989_3244684_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244718_3245645_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245713_3246811_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246829_3247693_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247704_3248487_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248483_3249602_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249598_3251131_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251171_3252179_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252323_3253046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253061_3254084_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254400_3255135_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255219_3256965_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3256961_3257714_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257758_3258715_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258803_3259370_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259377_3260238_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3260267_3260996_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3261027_3261711_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262548_3263463_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263527_3264436_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264526_3265951_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3265952_3267275_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267271_3269410_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269487_3274608_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274708_3275017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275086_3275644_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275659_3277141_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3279311_3280649_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280683_3282681_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282698_3284747_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284877_3285744_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286012_3286978_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287092_3288241_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3288665_3288977_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289010_3289271_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289420_3290554_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290624_3291761_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291926_3292721_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292783_3293227_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293342_3294293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3294394_3294823_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3294895_3297091_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3297312_3298263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3298361_3299312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3299271_3299796_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3299927_3300899_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3301018_3303463_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3303478_3304069_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3304312_3305263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	3308471	3413823	4109506	terminase,protease,tRNA,tail,transposase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
WP_005013747.1|3308471_3309422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3309422_3309992_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3310059_3310875_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3311041_3312661_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3312739_3313681_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3313680_3314565_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3314568_3316221_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3316260_3317658_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3317699_3319079_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3319118_3319337_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3319677_3320550_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3320709_3321660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3321758_3322709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3323440_3323818_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3323802_3324504_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3324647_3325340_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3325339_3326443_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3326552_3328925_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3328921_3330481_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3330505_3331303_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3331334_3332480_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3332584_3334027_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3334029_3335259_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3337396_3338347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3339476_3340034_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3340009_3340360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3340528_3341323_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3341319_3342369_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3342368_3343058_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3343144_3343642_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3343673_3344990_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3345006_3345981_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3346017_3346476_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3346475_3347156_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3347158_3347587_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3347639_3349370_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3349435_3350008_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3349988_3350675_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3351030_3351702_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3352030_3352252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3352251_3352533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3352529_3353045_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3353044_3353596_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3353574_3353817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3353821_3354634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3354633_3354897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3354937_3355135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3355115_3355532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3355536_3359493_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3359485_3359875_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3359871_3360405_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3360472_3360832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3360841_3363454_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3363479_3363770_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3363787_3364117_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3364126_3364645_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3364899_3365400_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3365407_3365830_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3365826_3366225_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3366221_3366617_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3366616_3366817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3366818_3367301_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3367363_3367615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3368289_3369240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3369668_3370271_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3370393_3370636_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3370641_3371697_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3371725_3373144_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3373146_3374424_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3374410_3374896_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3375535_3376486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3376503_3376725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3376742_3377432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3377424_3377676_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3378230_3378842_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3378913_3379120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3379371_3380322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3380420_3381494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3381661_3382456_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3382495_3383020_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3383012_3384755_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3384964_3385723_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3385725_3386433_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3386449_3387331_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3387341_3388100_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3388068_3388824_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3388893_3390312_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3390333_3390984_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3391117_3391453_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3391541_3392492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3392568_3394389_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3394393_3395467_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3395589_3396558_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3396631_3397543_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3397561_3398134_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3398214_3398763_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3398762_3400352_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3400421_3400661_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3400701_3401727_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3401792_3402974_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3403070_3403523_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3403532_3404873_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3405189_3406227_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3406608_3406968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3407051_3407993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3408067_3409018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3409311_3410406_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3410487_3411369_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3411390_3412230_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3412305_3413823_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 31
NZ_CP011184	Bordetella pertussis strain H579 chromosome, complete genome	4109506	4031677	4085109	4109506	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4031677_4032628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032797_4034024_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034223_4035090_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035082_4036045_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036145_4037096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037194_4038145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038243_4039194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039190_4040684_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040680_4043788_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043784_4046853_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046849_4048100_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048280_4049042_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049074_4049725_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4049727_4050567_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050807_4051551_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4051633_4051981_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052078_4052921_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052965_4053853_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053879_4054068_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054165_4055623_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055609_4057136_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057154_4057622_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4057621_4058644_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4058764_4059484_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4059559_4060660_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060661_4061852_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4061971_4062988_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063306_4063978_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4063974_4064883_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065094_4065742_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4069593_4070670_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070680_4071490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071579_4072353_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072353_4072518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853639.1|4072535_4073486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077598841.1|4073374_4074397_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4074386_4075541_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4075580_4076993_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4077117_4077984_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4077985_4078810_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4078806_4079568_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4079648_4080335_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4080508_4081516_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4081512_4082292_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4082349_4083612_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4084158_4085109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
