The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	27282	70036	4102661	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	77634	136108	4102661	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	164894	225405	4102661	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	233337	286925	4102661	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	555310	614610	4102661	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574128_574287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905441.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	620765	674506	4102661	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656584_657844_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660568_661945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666808_667033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668522_669140_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673555_674506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	723444	763394	4102661	tRNA,integrase,transposase,protease	Pseudomonas_phage(33.33%)	28	720692:720710	740580:740598
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728926_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736409_737360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750949_751690_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751916_752864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754251_755202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755395_756211_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756343_757783_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757796_758138_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758192_759848_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759999_761010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761142_761916_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762443_763394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	773321	820939	4102661	transposase,tRNA,holin,protease	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773321_774272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774410_775163_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775401_777126_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777145_778405_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778419_779514_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779510_781637_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781649_782330_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782607_783981_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783982_785002_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785065_786037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786101_787052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787150_787993_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787992_788328_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788398_789817_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790096_791137_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791216_791468_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791578_792742_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793025_793880_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793876_794767_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794809_795721_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795747_796440_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796454_797435_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797447_799589_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799637_800606_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800596_801265_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801225_802161_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802157_803054_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803050_803773_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803763_803928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804101_804605_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804881_805997_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806139_806604_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806751_807291_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807312_808647_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808660_808966_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809390_809972_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810053_811004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811102_812053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812493_813399_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813454_815059_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815315_816821_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816835_817300_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817589_818540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818702_819233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819232_819544_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819988_820939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	996800	1099193	4102661	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996800_997916_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998016_998835_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998932_999544_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999703_1001080_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001142_1001601_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001685_1002381_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002442_1002724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003286_1004039_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004083_1005160_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005156_1006107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006209_1006872_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006966_1007137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007489_1008491_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008493_1009690_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009710_1010514_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010594_1010891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010921_1011485_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011525_1012383_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012390_1013140_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013161_1014034_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014062_1014842_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014875_1015673_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018327_1018720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018713_1019574_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019577_1020540_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021316_1022006_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022866_1023817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024166_1025036_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025106_1025802_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025791_1026301_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026297_1027518_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027465_1028368_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029254_1030541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030579_1031953_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031991_1032693_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032991_1033981_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034081_1034543_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034558_1035107_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035248_1036724_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036829_1037921_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037924_1038707_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038716_1039505_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040630_1041065_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041061_1042072_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042115_1043042_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043328_1043697_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043913_1044864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044908_1047335_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047383_1048076_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048148_1049348_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049365_1050271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050386_1051316_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051341_1052688_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052715_1053465_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053478_1054261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054453_1055404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055465_1056575_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057087_1057924_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057993_1058959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058955_1059906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060291_1060834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061869_1062820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063061_1063430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063475_1064600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065734_1066487_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066578_1067199_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067302_1068253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068249_1070358_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070502_1071162_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071193_1071658_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071933_1072119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072170_1072923_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072929_1074192_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074233_1075472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076549_1077677_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077687_1078515_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078501_1079368_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080734_1081139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081230_1082181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082550_1083462_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083476_1084187_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084183_1085428_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085429_1085864_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085892_1086198_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086296_1087247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087303_1088458_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088532_1089483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090014_1090812_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090859_1091513_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091469_1092558_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092722_1094948_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097225_1098122_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098242_1099193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1129579	1200551	4102661	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129579_1130530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130586_1131699_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134082_1135033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135623_1136400_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136517_1136781_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136881_1137886_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138086_1139688_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139713_1140472_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140563_1141220_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141310_1142075_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142084_1142273_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142328_1143372_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143368_1143782_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_077069187.1|1143778_1144399_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144679_1145630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145797_1147189_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147261_1147840_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147956_1149354_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149469_1150675_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150774_1151293_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151387_1151633_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151860_1152175_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152264_1157454_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157450_1159619_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159674_1161990_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161994_1163314_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163332_1165006_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165010_1165679_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165835_1169657_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169987_1170938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170959_1172105_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172253_1173183_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173179_1174268_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174264_1175068_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175064_1175796_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175853_1177143_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177239_1177842_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182396_1182735_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183442_1183709_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185415_1186366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186362_1187694_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188954_1190955_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190947_1191589_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191585_1191993_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191989_1192790_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192864_1193569_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193600_1194395_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194391_1195342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195440_1196391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196489_1196924_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197006_1199343_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199534_1200551_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1241622	1302771	4102661	transposase,tRNA	Burkholderia_phage(20.0%)	46	NA	NA
WP_010929591.1|1241622_1242573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1242660_1244313_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1244323_1245112_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1245111_1245582_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1245656_1246970_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1247023_1247629_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1247945_1248896_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248892_1249843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250103_1251132_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251211_1252510_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252506_1253088_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253400_1257447_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257687_1265349_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265345_1266296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267435_1267909_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268048_1268669_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268804_1269605_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269659_1270751_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270772_1271216_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271244_1271877_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271987_1272404_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272396_1273089_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273195_1273570_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273646_1274456_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274551_1275496_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275534_1276506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276596_1277034_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277092_1277974_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278977_1279838_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279870_1281253_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281249_1282269_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282641_1283136_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283143_1283884_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283964_1285569_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285608_1286397_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287599_1288688_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289568_1290381_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290393_1290702_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290819_1292550_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292551_1293697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1294399_1295350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810957.1|1295665_1296133_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296268_1297651_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297647_1298772_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298768_1301405_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301820_1302771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1323856	1369587	4102661	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_005013747.1|1323856_1324807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325428_1327156_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327267_1328626_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328918_1329869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329909_1330980_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1331002_1331881_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332052_1333024_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333186_1334029_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334190_1334871_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1334864_1336034_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1336030_1337062_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337105_1338347_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338381_1339914_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339994_1340618_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340648_1341260_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341295_1341766_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342197_1343202_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343238_1344753_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344756_1345716_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345744_1346548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346549_1348184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348267_1349329_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349527_1349797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349800_1350325_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1350740_1351691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351687_1352722_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352830_1353469_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353763_1353991_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354113_1354827_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355071_1356022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1356125_1356407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356521_1357970_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1358080_1359031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1359027_1359477_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1359671_1360622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360957_1361155_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361170_1361530_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361604_1362627_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362639_1365057_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1365062_1365404_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1365462_1365873_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366372_1367464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367647_1368244_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368343_1368526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368636_1369587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1414525	1470931	4102661	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010930208.1|1414525_1415476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1415478_1416432_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1416459_1417311_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1417316_1418345_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1418341_1419385_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1419452_1420478_-	dipeptidase	NA	NA	NA	NA	NA
WP_005012067.1|1420715_1421666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930971.1|1421808_1423062_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1423072_1423345_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1423341_1426281_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1426288_1426888_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1426888_1427737_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1427774_1428761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1428776_1430213_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1430225_1431017_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1431335_1432391_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1432427_1433237_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1433237_1433786_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1433936_1434356_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1434430_1436092_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1436107_1437007_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1437121_1438126_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1438183_1439272_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1439353_1439596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1439737_1440292_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1440299_1440680_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1440770_1442696_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1442796_1443930_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1444098_1446849_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1447181_1447556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1447593_1448136_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1448139_1449312_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1449333_1450221_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1450313_1451264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1451430_1451784_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451796_1452159_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452200_1452626_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452828_1454085_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454283_1455264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455413_1456655_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1456753_1457704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457712_1458408_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461229_1461829_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461839_1464005_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1464028_1465813_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465812_1465902_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466596_1466869_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466868_1468935_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010930363.1|1468931_1469882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469980_1470931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1546391	1614477	4102661	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1546391_1546880_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546997_1547576_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547681_1548050_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548148_1549099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549105_1550218_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550904_1552107_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1552142_1552289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1552310_1554971_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1554983_1558388_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559055_1561281_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561327_1561654_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561704_1562313_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1562411_1563362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563431_1564196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1564192_1564792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564895_1565747_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565806_1566433_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566429_1567380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567478_1568591_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568580_1569582_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569687_1571199_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571195_1572500_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572611_1573172_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573439_1573994_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574449_1574665_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574919_1577517_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577513_1578701_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1579359_1579974_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1580062_1581190_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581201_1582107_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582999_1583950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584131_1584884_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584952_1585612_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585608_1586337_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586349_1588629_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588653_1588857_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588898_1589531_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589666_1590584_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590580_1591294_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591531_1592302_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592306_1592906_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593150_1594641_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594699_1594984_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1595121_1595277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1595549_1596476_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596612_1597353_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597519_1598896_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599077_1599983_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601634_1603437_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1603563_1604205_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604303_1605254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1605275_1606496_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1606681_1608094_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1608157_1609225_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1609224_1610712_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1610721_1611666_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1611825_1612524_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1612601_1613507_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1613526_1614477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1650426	1706017	4102661	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650426_1651377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651435_1652209_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652201_1653758_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653754_1654705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656031_1656634_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656873_1657575_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657568_1658351_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658535_1659486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659584_1660322_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660511_1661270_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661316_1662306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662483_1663452_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664991_1665960_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665968_1666910_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667383_1668394_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668384_1669899_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669895_1671242_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1671244_1672279_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672328_1673954_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674506_1675457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675561_1676509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676562_1678377_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678369_1679044_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679173_1682248_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682261_1682561_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682875_1683499_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1683742_1684612_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684589_1685534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685619_1686546_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686658_1687438_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687428_1688625_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688655_1689606_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689827_1690517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019249354.1|1690581_1691337_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691388_1692381_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692390_1693344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693459_1694422_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695823_1696252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696248_1697199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1697492_1698230_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698653_1699841_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1699844_1700225_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701944_1702916_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702929_1703643_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703647_1704565_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704671_1704968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705066_1706017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	1938781	2008433	4102661	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1938781_1941439_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1941516_1942719_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1942715_1943228_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1943350_1943788_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1944064_1945015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1945113_1946064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1946317_1948123_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1948236_1948404_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1948467_1948704_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1949072_1950272_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1951787_1952738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1953189_1954191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1954363_1955221_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1955217_1956480_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1956580_1956955_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1957027_1958215_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1958299_1959070_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1959183_1959948_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1959898_1961200_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1961196_1962003_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1963747_1964719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1964875_1965388_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1965546_1966521_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1967521_1968316_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1968341_1969148_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1969258_1969849_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1969859_1971038_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1971140_1971515_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1971767_1973099_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1973165_1976396_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1977886_1978633_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1978717_1979179_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1979216_1980275_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1980237_1982067_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1982106_1982679_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1984103_1984925_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1985243_1986566_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1986925_1987561_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1987520_1988471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1989341_1990214_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1990291_1991431_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1991789_1993046_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1993051_1993579_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1993583_1994402_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1994401_1995124_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1995145_1995460_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1995477_1996626_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1996656_1997532_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1997528_1998848_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1998920_2000117_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2000127_2001615_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2004209_2005109_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2005246_2006212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2006310_2007261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2007482_2008433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2019929	2070905	4102661	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2019929_2020880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2022017_2022314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2022488_2023841_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2023983_2025000_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2026979_2027993_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2028079_2028985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2029141_2029486_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2029643_2030102_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2030115_2032332_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2032328_2033390_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2033418_2034393_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2034344_2035163_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2035175_2035784_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2035958_2036354_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2036372_2037812_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2037840_2038188_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2038206_2039157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2039809_2040760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2040843_2042661_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2042734_2043382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2043394_2044324_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2044493_2044958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2045205_2045886_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2045934_2047626_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2047641_2048193_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2048189_2048561_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2048673_2049510_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2049520_2050045_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2050142_2050322_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2050451_2051426_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2051556_2051913_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2051902_2052778_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2052876_2053761_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2053782_2055078_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2056026_2056677_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2056764_2058285_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2058542_2060408_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2061453_2062404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2062421_2062562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2063376_2063736_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2063723_2065160_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2065156_2065810_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2065806_2067000_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2067103_2068378_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2068374_2069325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2069954_2070905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2081578	2149954	4102661	transposase,tRNA,protease	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2081578_2082529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2082627_2083578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2083537_2083951_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2084235_2084535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2084944_2087227_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2087692_2087887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2087912_2089943_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2089962_2090175_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2090452_2090992_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2091105_2092401_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2092477_2093635_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2093818_2094718_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2094736_2096041_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2096006_2097113_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2097200_2097437_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2097575_2098646_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2098649_2100005_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2100031_2101192_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2101194_2101833_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2101834_2103121_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2103179_2104475_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2104481_2104988_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2104984_2106133_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2106160_2106586_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2106908_2109791_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2109883_2110639_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2111404_2112754_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930048.1|2112852_2113803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2113876_2114350_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2114375_2115584_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2115580_2116354_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2116353_2116977_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2117142_2117403_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2117706_2118288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2118354_2118609_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2118595_2121220_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2121291_2122110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2122106_2122712_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2122749_2123883_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2125598_2125973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2126070_2127345_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2127348_2128926_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2129832_2131188_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2131184_2132819_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2132811_2133642_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2133659_2134604_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2134656_2136231_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2136278_2136638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2136630_2136951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2137066_2137999_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2138101_2139058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2139207_2140545_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2140549_2141806_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2142001_2143048_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2143105_2143474_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2143604_2144477_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2144553_2145456_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2146512_2147730_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2149003_2149954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2165232	2230053	4102661	transposase,tRNA,protease	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2165232_2166183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166753_2166966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166983_2167715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167749_2168391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168383_2169052_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171264_2172041_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172062_2173220_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173216_2173648_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2173644_2174448_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174461_2174863_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174929_2175901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175966_2177190_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177417_2178368_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178491_2180945_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181133_2182438_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182542_2183196_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183198_2184509_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2184705_2185266_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185377_2185578_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185923_2186490_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186573_2186777_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187083_2187404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187445_2187727_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187801_2189058_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189440_2189770_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191340_2192162_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192161_2193301_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193307_2194204_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2194200_2196126_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196485_2199098_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199150_2201451_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201447_2202656_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2202917_2203292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203288_2204239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204337_2206332_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206391_2207357_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207346_2210208_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210210_2210717_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210821_2212030_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212031_2212970_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213131_2213605_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213601_2214552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2214662_2215103_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2215231_2216461_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2216499_2217321_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2217374_2218526_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2218617_2219106_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2221656_2224206_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2224276_2226850_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2227115_2227316_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2227347_2227509_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2227566_2227905_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2228053_2229004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229102_2230053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2538222	2576812	4102661	transposase,protease	Planktothrix_phage(14.29%)	35	NA	NA
WP_005012808.1|2538222_2539173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2539351_2541046_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541042_2542128_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542175_2543075_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543085_2543730_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2544751_2547994_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548004_2549159_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549385_2550348_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2550446_2551397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2551495_2552446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2552455_2553145_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2553204_2553642_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2553687_2554581_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2554628_2555801_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2555797_2556952_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2557148_2557499_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2557488_2557923_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2557939_2558890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559037_2559505_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2559485_2560643_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2560708_2561635_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2561752_2562703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811761.1|2562737_2563163_-	NfeD family protein	NA	NA	NA	NA	NA
WP_010930359.1|2563286_2564006_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_010930358.1|2564073_2566437_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930357.1|2566598_2567426_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003811768.1|2567437_2568211_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_003811770.1|2568207_2568813_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_010930356.1|2568799_2569981_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010930355.1|2569977_2570772_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|2570772_2571228_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930354.1|2571299_2572391_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811782.1|2572399_2572963_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930353.1|2573088_2575425_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_010930352.1|2575477_2576812_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 22
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2604983	2671483	4102661	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2604983_2605934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606303_2606876_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2606878_2607889_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2607881_2608382_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608392_2608734_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2608745_2609537_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2609553_2609823_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2609845_2610634_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2610680_2611697_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2611913_2613356_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2613534_2615154_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615274_2617095_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617173_2618706_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2618739_2620386_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2620455_2621478_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2621495_2622629_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2622631_2623321_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623320_2624106_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624149_2624914_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2624952_2626374_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2626439_2627144_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627191_2627611_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2627623_2628031_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628214_2628925_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629051_2629342_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629359_2629842_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634347_2635502_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2635807_2636824_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637070_2637859_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2637925_2638606_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2638602_2639373_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2639471_2640422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2640477_2641395_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641405_2642584_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2642603_2643599_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645187_2645796_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2645783_2646824_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2646841_2647804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2647800_2648994_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2648990_2649788_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2649813_2650800_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2650818_2652858_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2653059_2653740_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2653753_2654665_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2654661_2655240_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655378_2656284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656291_2659711_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2659698_2662299_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663254_2663887_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664280_2665039_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2665035_2666238_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2666425_2667376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668283_2669429_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2669415_2670171_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670287_2670467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2670532_2671483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2871920	2945245	4102661	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2871920_2873276_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874754_2875477_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875531_2876515_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876644_2877595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877591_2878494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878581_2879340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879352_2880444_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880541_2881969_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882198_2883413_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883458_2886329_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888739_2889228_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889353_2892050_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892204_2894487_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2894660_2895284_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2895382_2896333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896379_2896934_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897001_2897847_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897916_2898885_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2898884_2899748_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2902580_2906507_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907242_2910473_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910754_2911582_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911615_2912311_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912303_2913584_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913593_2914571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914552_2916253_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916355_2917459_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917489_2918245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918251_2919772_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919814_2920117_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920113_2920746_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920824_2922690_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922686_2923481_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923509_2924625_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925529_2926408_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926407_2927232_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927399_2928350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928562_2931412_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931393_2932122_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932262_2933726_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933722_2934094_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934111_2935425_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935461_2935920_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936032_2936983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936979_2937993_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938132_2939119_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939477_2940185_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940765_2941716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941867_2942470_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942488_2943121_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943165_2943417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943358_2945245_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 24
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	2956970	3006583	4102661	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2956970_2957921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957947_2958412_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959618_2961907_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962023_2962896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962938_2964093_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964127_2964958_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965041_2966586_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966628_2966988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966989_2967403_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967443_2967761_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967845_2968562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968825_2970247_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970313_2973061_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973393_2974410_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974745_2975387_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975477_2976914_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977071_2978145_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978141_2979278_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2979422_2979767_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979833_2981714_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981763_2982699_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983031_2984048_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984985_2986413_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986409_2987432_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987421_2987895_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988035_2988923_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988919_2990563_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2990559_2991609_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992397_2993414_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993513_2994146_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994154_2994544_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994596_2995649_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996512_2998219_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998292_2998793_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998807_3000865_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000891_3001185_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001286_3002234_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002246_3003122_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003242_3003803_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003837_3004161_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004596_3005334_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005632_3006583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	3027534	3100028	4102661	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3027534_3028485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028527_3029703_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029924_3031715_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031727_3033389_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033401_3036107_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036399_3038154_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038150_3038777_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038773_3039625_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3039700_3041815_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042001_3042616_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042761_3043013_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043082_3044465_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044461_3047641_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3048448_3049366_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049417_3050149_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050208_3050781_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052289_3053306_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3053443_3054493_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054597_3055548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055643_3056369_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056579_3056960_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057265_3058138_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058145_3058526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058679_3059954_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3061441_3062350_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063147_3064212_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066048_3067050_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067272_3067914_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067996_3069823_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070066_3070996_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070995_3071745_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071816_3072731_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072750_3073896_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073956_3074868_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074948_3075899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075997_3076582_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076616_3077606_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077602_3078544_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078540_3079761_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079803_3080118_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080309_3080669_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080670_3082386_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082573_3083245_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083259_3084588_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084584_3085484_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085570_3086656_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3086648_3087782_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3087781_3090463_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090833_3091415_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091540_3092266_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092262_3092940_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093155_3094337_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095109_3095292_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095321_3096272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096401_3096794_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097070_3097982_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098106_3099081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099077_3100028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	3113535	3167053	4102661	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3113535_3114486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114598_3114850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115355_3116474_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116593_3116806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116965_3117187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117239_3118190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119366_3120737_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120769_3121561_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121573_3122629_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122654_3123530_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123635_3123884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123918_3125373_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125369_3125891_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125919_3127272_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127495_3130384_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132528_3133830_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3133844_3134561_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134842_3135523_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3135534_3135702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3135810_3135957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3136050_3136710_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137108_3138941_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138937_3139888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3141051_3142767_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3142777_3143269_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3143341_3144358_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3144525_3145305_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3145323_3145851_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3146144_3146414_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3146504_3148664_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3148784_3149504_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3149500_3150451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3150591_3151809_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3151802_3152414_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3153047_3154025_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3154168_3154915_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3154936_3155383_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3156170_3158402_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3158424_3159225_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3159506_3160739_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3160849_3161839_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3161869_3163258_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3164856_3165840_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3166036_3167053_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	3231511	3304673	4102661	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3231511_3232462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232458_3233478_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233487_3236196_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236343_3237000_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237098_3238049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238196_3239090_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239289_3240984_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241018_3241945_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242013_3243111_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243129_3243993_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244004_3244787_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244783_3245902_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245898_3247431_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247471_3248479_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248623_3249346_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249361_3250384_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250700_3251435_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251519_3253265_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253261_3254014_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254058_3255015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255103_3255670_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255677_3256538_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256567_3257296_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257327_3258011_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258848_3259763_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259827_3260736_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260826_3262251_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262252_3263575_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263571_3265710_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265787_3270908_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271008_3271317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271386_3271944_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271959_3273441_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3275611_3276949_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276983_3278981_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278998_3281047_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853298.1|3281177_3282044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282312_3283278_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283392_3284541_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3284965_3285277_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285310_3285571_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285720_3286854_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286924_3288061_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288226_3289021_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289083_3289527_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289642_3290593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3290694_3291123_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3291195_3293391_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293612_3294563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294522_3295047_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295178_3296150_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296269_3298714_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298729_3299320_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299563_3300514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3300671_3301937_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3301970_3303068_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3303722_3304673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	3315960	3416073	4102661	transposase,protease,terminase,tRNA,tail	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3315960_3316911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317642_3318020_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318004_3318706_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318849_3319542_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319541_3320645_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320754_3323127_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323123_3324683_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324707_3325505_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325536_3326682_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326786_3328229_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328231_3329461_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331598_3332549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333678_3334236_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334211_3334562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334730_3335525_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335521_3336571_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336570_3337260_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337346_3337844_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337875_3339192_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339208_3340183_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340219_3340678_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340677_3341358_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341360_3341789_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341841_3343572_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343637_3344210_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344190_3344877_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345232_3345904_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346232_3346454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346453_3346735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346731_3347247_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347246_3347798_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347776_3348019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348023_3348836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348835_3349099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349139_3349337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349317_3349734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349738_3353695_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353687_3354077_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354073_3354607_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354674_3355034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355043_3357656_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357681_3357972_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357989_3358319_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358328_3358847_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359101_3359602_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359609_3360032_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360028_3360427_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3360423_3360819_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3360818_3361019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361020_3361503_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361565_3361817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362491_3363442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363870_3364473_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364595_3364838_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364843_3365899_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365927_3367346_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367348_3368626_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368612_3369098_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010929591.1|3369737_3370688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370944_3371634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371626_3371878_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3372432_3373044_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373115_3373322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373573_3374524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374622_3375696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375863_3376658_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376697_3377222_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377214_3378957_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379166_3379925_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379927_3380635_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380651_3381533_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381543_3382302_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382270_3383026_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383095_3384514_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384535_3385186_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385319_3385655_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385743_3386694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386770_3388591_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388595_3389669_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389791_3390760_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390833_3391745_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391763_3392336_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392416_3392965_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392964_3394554_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394623_3394863_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394903_3395929_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395994_3397176_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397272_3397725_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397734_3399075_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3399391_3400429_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400810_3401170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401253_3402195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402269_3403220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403513_3404608_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3404689_3405571_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405592_3406432_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406507_3408025_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408121_3409222_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409238_3409661_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3409683_3409896_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409942_3410863_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411045_3411795_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411797_3412127_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3412333_3413767_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3413778_3414162_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414223_3415024_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415122_3416073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	3702690	3835616	4102661	transposase,tRNA,integrase	uncultured_Mediterranean_phage(10.34%)	114	3747333:3747350	3791973:3791990
WP_005013747.1|3702690_3703641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3703637_3704273_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3704402_3705302_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3705397_3705889_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3705935_3706901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3708034_3709276_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3709389_3710406_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3710440_3710917_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3711059_3711968_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3712081_3713194_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3713294_3713780_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3713916_3715167_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3715268_3715781_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3715879_3716830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069191.1|3716895_3717834_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3717856_3718483_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3718479_3719136_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3719132_3719735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3719741_3720329_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3720509_3721079_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3721149_3722469_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3722575_3722767_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3723018_3724308_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3724462_3725458_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3725542_3726217_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3726213_3727164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3727325_3728567_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3728563_3729508_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3729626_3730577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3730536_3731466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3731519_3731855_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3731899_3732664_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3732687_3733428_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3733435_3734989_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3735023_3736001_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3736273_3736855_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3736906_3743809_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3744255_3744387_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3744652_3744859_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3745863_3746523_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3746550_3747696_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747333:3747350	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3747836_3748172_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3748246_3749107_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3749370_3750072_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3750241_3750637_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3750746_3751697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3751707_3752349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3752515_3752758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3752856_3753807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3753842_3754310_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3754543_3754921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3754917_3755100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3755103_3756090_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3756086_3756734_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3756791_3757319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3757355_3758540_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3758550_3758892_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3759004_3759205_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3759201_3760191_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3761677_3763648_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3763889_3764288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3764296_3765220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3765677_3766628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3766858_3768550_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3768598_3768871_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3768867_3769239_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3769334_3769469_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3769874_3771284_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3771286_3772396_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3772490_3774944_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3775062_3775854_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3775973_3777401_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3777439_3778411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3778829_3779993_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3780080_3780926_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3782482_3783433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3783987_3784362_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3784436_3785495_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3785518_3786469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3789350_3790520_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3790620_3792228_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3791973:3791990	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3792274_3794296_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3794324_3794570_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3794583_3795774_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3795969_3796935_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3796957_3798097_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3798308_3799271_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3799394_3801419_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3801615_3803859_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3804137_3804596_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3805523_3808145_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3808208_3810836_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3810987_3812052_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3812051_3812822_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3812830_3813664_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3813676_3814456_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3814529_3815963_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3815990_3816749_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3816804_3818655_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3818748_3819225_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3819241_3820162_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3820268_3820769_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3821142_3821835_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3822143_3823094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3823090_3826864_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3827200_3829090_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3829101_3829995_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3830098_3830896_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3830892_3831744_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3831805_3832486_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3832522_3832849_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3832849_3833809_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3833829_3834318_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3834599_3835616_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011183	Bordetella pertussis strain H520 chromosome, complete genome	4102661	4024832	4078264	4102661	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4024832_4025783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025952_4027179_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027378_4028245_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028237_4029200_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029300_4030251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030349_4031300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031398_4032349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032345_4033839_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033835_4036943_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036939_4040008_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040004_4041255_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4041435_4042197_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042229_4042880_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4042882_4043722_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043962_4044706_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4044788_4045136_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045233_4046076_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046120_4047008_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047034_4047223_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047320_4048778_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4048764_4050291_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050309_4050777_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4050776_4051799_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4051919_4052639_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4052714_4053815_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053816_4055007_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055126_4056143_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056461_4057133_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057129_4058038_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058249_4058897_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4062748_4063825_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063835_4064645_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064734_4065508_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065690_4066641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4066529_4067552_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4067541_4068696_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4068735_4070148_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4070272_4071139_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4071140_4071965_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071961_4072723_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4072803_4073490_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4073663_4074671_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4074667_4075447_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4075504_4076767_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4077313_4078264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
