The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	27282	70036	4108495	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	77634	136108	4108495	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	164893	225404	4108495	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	233336	286924	4108495	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	390857	448366	4108495	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417525_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	590420	651611	4108495	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	656935	703126	4108495	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	709292	763222	4108495	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	885811	1026379	4108495	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965085_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977996_978908_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980133_981048_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981119_981869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984950_985592_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985781_986816_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990514_991423_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992910_994185_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994726_995599_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996495_997221_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011049_1013110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1047330	1096943	4108495	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1112197	1177269	4108495	transposase,tRNA	Catovirus(25.0%)	45	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126681_1127506_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127505_1128384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129288_1130404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130432_1131227_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131223_1133089_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133167_1133800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133796_1134099_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134141_1135662_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135668_1136424_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136453_1137558_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137660_1139361_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139342_1140320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140329_1141610_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141602_1142298_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142331_1143159_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143440_1146671_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147406_1151333_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153232_1155029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155028_1155997_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156066_1156912_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156979_1157534_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158629_1159262_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159426_1161709_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161863_1164560_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164685_1165174_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167584_1170455_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170500_1171715_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171944_1173372_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173469_1174561_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174573_1175332_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175419_1176322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176318_1177269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1317952	1386439	4108495	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317952_1318903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319671_1320310_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321199_1321646_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321727_1322429_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322429_1323197_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323193_1324432_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324431_1325358_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325460_1326576_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326591_1327542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327895_1328477_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328473_1329307_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329517_1330831_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331007_1331889_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331908_1332760_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332812_1333901_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334011_1335139_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335373_1335985_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336083_1337034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337255_1337633_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337780_1338278_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338274_1338802_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338935_1339751_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339763_1340945_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340992_1341886_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342012_1342483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342608_1343436_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343464_1344241_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344237_1344513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344527_1344992_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345003_1345705_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345814_1346315_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346397_1347576_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349203_1349539_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349726_1351175_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351232_1351577_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351683_1352223_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352315_1353266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353364_1353772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354004_1354436_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354617_1355022_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356258_1356582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356584_1357472_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357504_1357930_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358001_1358355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358594_1359101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359139_1360471_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360530_1361346_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361342_1362197_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365259_1367803_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369169_1370924_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370920_1373041_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373045_1375241_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375237_1378579_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381381_1382332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382397_1382577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382693_1383449_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383435_1384581_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385488_1386439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1446930	1502418	4108495	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446930_1447881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449082_1449529_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449521_1450997_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450993_1451749_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451741_1452752_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452741_1454418_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454730_1455063_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455076_1455472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455481_1455808_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455804_1456131_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456057_1457080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457076_1457427_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457474_1457903_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457910_1459284_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459424_1459802_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460064_1461372_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461432_1462263_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462259_1462748_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462789_1464310_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464353_1464830_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465633_1468231_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468260_1469082_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469808_1470558_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470741_1471620_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471717_1472434_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472448_1473009_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473175_1473940_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473959_1474817_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474813_1476013_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476052_1477387_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477439_1479776_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479901_1480465_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480473_1481565_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481636_1482092_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482092_1482887_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482883_1484065_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484051_1484657_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484653_1485427_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485438_1486266_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486427_1488791_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488858_1489578_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489701_1490127_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490161_1491112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491229_1492156_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492221_1493379_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493359_1493827_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1493974_1494925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494941_1495376_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495365_1495716_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495912_1497067_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497063_1498236_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498283_1499177_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499222_1499660_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499719_1500409_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500418_1501369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1501467_1502418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1597115	1657027	4108495	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1597115_1597604_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597721_1598300_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598405_1598774_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598872_1599823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599829_1600942_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601628_1602831_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1603034_1605695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1605707_1609112_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609779_1612005_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612051_1612378_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612428_1613037_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613135_1614086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1614184_1615135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615204_1615969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615965_1616502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616668_1617520_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617579_1618206_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618202_1619153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619251_1620364_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620353_1621355_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621460_1622972_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622968_1624273_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624384_1624945_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625212_1625767_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626222_1626438_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626692_1629290_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629286_1630474_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631132_1631747_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631835_1632957_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632974_1633880_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634772_1635723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635904_1636657_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636725_1637385_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637381_1638110_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638122_1640402_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640426_1640630_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640671_1641304_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641439_1642357_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642353_1643067_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643304_1644075_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644079_1644679_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644923_1646414_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646472_1646757_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647322_1648249_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648385_1649126_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649292_1650669_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650850_1651756_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653407_1655210_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655327_1655978_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656076_1657027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1702199	1757790	4108495	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702199_1703150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703208_1703982_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703974_1705531_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705527_1706478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707804_1708407_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708646_1709348_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709341_1710124_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710308_1711259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711357_1712095_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712284_1713043_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713089_1714079_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714256_1715225_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716764_1717733_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717741_1718683_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719156_1720167_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720157_1721672_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721668_1723015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723017_1724052_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724101_1725727_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726279_1727230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727334_1728282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728335_1730150_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730142_1730817_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730946_1734021_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734034_1734334_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734648_1735272_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735515_1736385_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736362_1737307_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737392_1738319_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738431_1739211_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739201_1740398_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740428_1741379_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741600_1742290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742354_1743110_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743161_1744154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744163_1745117_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745232_1746195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747596_1748025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748021_1748972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1749265_1749988_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750426_1751614_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1751617_1751968_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753717_1754689_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754702_1755416_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755420_1756338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756444_1756741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756839_1757790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	1990554	2060206	4108495	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1990554_1993212_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1993289_1994492_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1994488_1995001_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1995123_1995561_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995837_1996788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996886_1997837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1998000_1999896_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2000009_2000177_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2000240_2000477_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2000845_2001997_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2003560_2004511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004962_2005964_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006136_2006994_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006990_2008253_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008353_2008728_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2008800_2009988_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010072_2010843_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010956_2011721_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011671_2012973_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2012969_2013776_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2015520_2016492_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016648_2017161_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017319_2018294_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019294_2020089_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020114_2020921_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021031_2021622_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021632_2022811_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022913_2023288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023540_2024872_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024938_2028169_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029659_2030406_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030490_2030952_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030989_2032048_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032010_2033840_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033879_2034452_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035876_2036698_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037016_2038339_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038698_2039334_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039293_2040244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041114_2041987_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042064_2043204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043562_2044819_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044824_2045352_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045356_2046175_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046174_2046897_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046918_2047233_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047250_2048399_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048429_2049305_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049301_2050621_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050693_2051890_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051900_2053388_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055982_2056882_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057019_2057985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058083_2059034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059255_2060206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2071702	2121098	4108495	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2071702_2072653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073790_2074087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074261_2075614_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075756_2076773_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2078752_2079766_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2079852_2080758_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2080914_2081259_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081416_2081875_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2081888_2084105_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084101_2085163_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085191_2086166_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086117_2086936_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2086948_2087557_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2087731_2088127_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088145_2089585_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089613_2089961_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2089979_2090930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091582_2092533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092616_2094434_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094507_2095155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095167_2096097_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096266_2096731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096978_2097659_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097707_2099399_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099414_2099966_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099962_2100334_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100446_2101283_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101293_2101818_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101915_2102095_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102224_2103199_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103329_2103686_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103675_2104551_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104649_2105534_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105555_2106851_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107799_2108450_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2108537_2110058_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110315_2112181_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113226_2114177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114194_2114335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115149_2115509_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115496_2116933_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116929_2117583_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117579_2118773_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118876_2120151_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120147_2121098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2132302	2172993	4108495	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2132302_2133253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133351_2134302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2134261_2134675_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2134959_2135259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2135668_2137951_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2138416_2138611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2138636_2140667_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2140686_2140899_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2141176_2141716_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2141829_2143125_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2143201_2144359_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2144542_2145442_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145460_2146765_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2146730_2147837_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2147924_2148161_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148299_2149370_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149373_2150729_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2150755_2151913_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2151918_2152557_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2152558_2153854_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2153903_2155190_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155205_2155712_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155708_2156857_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2156884_2157310_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157632_2160515_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160607_2161363_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162128_2163478_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2163576_2164527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2164625_2165576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2165649_2166123_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2166148_2167357_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2167353_2168127_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2168126_2168750_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2168915_2169176_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2169479_2170061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2170127_2170382_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2170368_2172993_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2200776	2266325	4108495	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2200776_2201727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201927_2202737_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2202861_2203812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203808_2204702_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204826_2205021_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205020_2205362_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205371_2207234_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207363_2207876_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207878_2208202_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208203_2208614_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208651_2209863_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209880_2210393_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210608_2211100_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211352_2213389_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213466_2214669_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214797_2215448_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217005_2217956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218526_2218739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218756_2219488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219522_2220164_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220156_2220825_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223037_2223814_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223835_2224993_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224989_2225421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2225417_2226215_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226234_2226636_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226702_2227674_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227739_2228963_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229190_2230141_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230264_2232718_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232906_2234211_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234315_2234969_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234971_2236282_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2236460_2237039_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237150_2237351_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237696_2238263_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238346_2238550_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238856_2239177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239218_2239500_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239574_2240831_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241213_2241543_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243113_2243935_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243934_2245074_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245080_2245977_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2245991_2247899_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248258_2250871_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250923_2253224_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253220_2254429_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2254690_2255065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255061_2256012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256110_2258105_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258164_2259130_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259119_2261981_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261983_2262490_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262594_2263803_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263804_2264743_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264904_2265378_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265374_2266325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2352502	2416080	4108495	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2352502_2353453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353754_2354231_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354854_2356492_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356522_2357836_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357969_2358287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358387_2359710_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359706_2360657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2360755_2361706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362235_2363258_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363286_2364117_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364133_2365831_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365895_2366972_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367131_2367995_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368025_2368595_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2368611_2369463_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370520_2371402_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371476_2372466_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372528_2373479_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373541_2374399_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374458_2374947_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376519_2377710_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377706_2379293_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379311_2380379_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380483_2382028_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382447_2384022_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2384138_2385146_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385142_2385982_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385986_2387624_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387620_2388571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2388713_2389988_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390017_2390308_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390380_2391394_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391413_2392676_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392678_2393602_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393598_2395092_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395102_2396035_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396216_2397542_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2397576_2398932_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398992_2400513_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400667_2401399_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2401496_2402807_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402822_2403734_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403724_2404318_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404379_2404766_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404777_2405248_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405259_2405883_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405903_2408651_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415129_2416080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2536228	2601949	4108495	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536228_2538172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538168_2539089_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539108_2539696_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539688_2540579_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540575_2541337_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541342_2542227_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542249_2544043_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544173_2545661_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545698_2546757_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546756_2547257_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547269_2547869_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547865_2548366_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548367_2549597_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549786_2550026_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550208_2550961_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550962_2551898_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551979_2552966_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552965_2554024_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554080_2554263_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554314_2554908_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555016_2555616_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555612_2556323_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556324_2557152_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558968_2560210_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560221_2560995_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561021_2561972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562070_2562853_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562941_2564168_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564893_2566279_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566297_2566903_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566899_2568756_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568752_2569553_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569567_2570761_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570828_2571803_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571925_2573149_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573259_2575464_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575758_2576418_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576425_2576632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576970_2577726_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2577996_2578512_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578784_2579102_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579289_2579526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579816_2581172_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581218_2582559_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582660_2583293_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583292_2585662_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585694_2586654_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586640_2587327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587323_2587656_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587771_2588722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588820_2589771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589767_2591834_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591833_2592106_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592800_2592890_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592889_2594674_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594697_2596863_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596873_2597473_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600294_2600990_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600998_2601949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2688066	2728735	4108495	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688066_2689017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689127_2689310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689409_2690006_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690189_2691281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691780_2692191_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692249_2692579_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692596_2695014_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695026_2696049_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696123_2696483_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696498_2696696_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697031_2697982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698176_2698626_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698622_2699573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699683_2701132_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701246_2701492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701631_2702582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702826_2703540_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703662_2703890_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704184_2704823_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704931_2705966_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705962_2706913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707328_2707853_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707856_2708126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708324_2709386_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709469_2711104_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711105_2711909_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711937_2712897_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712900_2714415_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714451_2715456_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715887_2716358_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716393_2717005_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717035_2717659_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717739_2719272_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719306_2720524_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720591_2721623_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721619_2722789_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722782_2723463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723624_2724467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724629_2725601_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725772_2726651_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726673_2727744_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727784_2728735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2784200	2857070	4108495	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784200_2784617_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784727_2785360_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785388_2785832_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785853_2786945_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2786999_2787800_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787935_2788556_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788695_2789169_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790308_2791259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791255_2798917_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799157_2803204_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803516_2804098_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804094_2805393_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805472_2806501_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806761_2807712_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807708_2808659_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808975_2809581_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809634_2810948_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811022_2811493_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811492_2812281_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812291_2813944_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814031_2814982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816143_2816650_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816646_2817411_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817426_2817711_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817775_2818765_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818936_2819866_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819837_2820524_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820557_2821103_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821147_2822413_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822409_2823312_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824493_2825438_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825532_2827050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827091_2828720_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828827_2829709_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832821_2833196_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833220_2833559_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833602_2835237_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835275_2836622_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836729_2838151_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838220_2838805_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838907_2839858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839992_2841099_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841109_2842207_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842351_2843557_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843563_2844085_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844081_2844564_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844569_2844821_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844801_2845287_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845422_2848884_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848901_2849786_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849795_2850227_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850473_2850977_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851054_2852455_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852529_2853405_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853401_2854409_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854876_2855182_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855272_2855863_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856053_2857070_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2860213	2927023	4108495	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2860213_2861164_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861262_2862213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862209_2863004_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863035_2863740_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863814_2864615_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864611_2865019_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865015_2865657_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865649_2867650_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868910_2870242_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870238_2871189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872895_2873162_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873869_2874208_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878760_2879363_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879459_2880749_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880806_2881538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881534_2882338_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882334_2883423_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883419_2884349_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884497_2885643_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885664_2886615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886945_2890767_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890923_2891592_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891596_2893270_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893288_2894608_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894612_2896928_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896983_2899152_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899148_2904329_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904427_2904742_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904969_2905215_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905309_2905828_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905927_2907133_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907248_2908646_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908762_2909341_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909413_2910805_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910972_2911923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912203_2912824_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912820_2913234_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913230_2914274_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914329_2914518_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914527_2915292_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915382_2916039_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916130_2916889_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916914_2918516_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918716_2919721_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919821_2920085_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920202_2920979_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921569_2922520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924903_2926016_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926072_2927023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	2957409	3001100	4108495	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2957409_2958360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958480_2959377_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961654_2963880_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964044_2965133_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965089_2965743_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965790_2966588_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967119_2968070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968150_2969299_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969355_2970306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970404_2970710_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970738_2971173_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971174_2972419_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972415_2973126_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973140_2974052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974414_2974819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974815_2975274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975280_2976189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976185_2977052_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977038_2977866_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977876_2979004_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980081_2981320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981361_2982624_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982630_2983383_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983434_2983620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983895_2984360_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984391_2985051_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985195_2987304_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987300_2988251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988354_2988975_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989078_2989819_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990953_2992078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992123_2992492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992733_2993684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994719_2995262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995647_2996598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996594_2997503_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997629_2998466_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998978_3000088_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000149_3001100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	3382095	3502340	4108495	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3382095_3383046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383450_3384095_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384119_3384704_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384804_3385422_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385424_3387140_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387136_3387445_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387461_3388079_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388123_3388426_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388526_3389381_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389568_3389793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389962_3390235_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390652_3391060_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391429_3392224_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392324_3393560_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393628_3394645_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394656_3396033_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396029_3397226_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397222_3398761_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398757_3400017_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401957_3402908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403674_3404769_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404761_3406096_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406049_3406733_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406758_3407922_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3407918_3408920_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408919_3409792_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409788_3410538_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410534_3411326_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411322_3412462_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412737_3413523_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413556_3414339_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414342_3414732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415871_3416735_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416770_3417859_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417855_3418806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419159_3422138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423064_3423943_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3424907_3425858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3426940_3427891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427887_3428355_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428397_3429168_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429188_3429989_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429999_3431409_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431503_3432289_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432528_3433545_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433652_3434045_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434182_3434863_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434867_3435839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435934_3436885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438389_3439091_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439090_3440515_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441584_3442925_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443040_3444804_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444915_3445794_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445906_3446722_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446725_3446977_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447061_3448078_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448408_3448630_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450990_3451908_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452405_3453614_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453693_3455265_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455382_3456318_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456506_3457451_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458018_3463736_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463741_3464869_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464924_3465551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465822_3466839_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466934_3467645_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467641_3468631_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468726_3470358_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470360_3471098_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471253_3472126_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472475_3473615_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473611_3474271_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474342_3474975_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475004_3475523_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475533_3476643_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476689_3477544_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477545_3478448_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479670_3480621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482377_3483367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483542_3484331_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484327_3485359_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485377_3485941_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485996_3487517_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487780_3488485_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488492_3489221_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489335_3489710_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489752_3491042_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491038_3492208_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492204_3493044_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493103_3494039_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494051_3495002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495100_3496063_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496094_3496454_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496578_3497481_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497482_3499255_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499289_3500066_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501389_3502340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	3517278	3575351	4108495	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517278_3518229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518357_3519491_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519534_3520440_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520442_3522143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522139_3523060_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523067_3524045_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524103_3525138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527112_3527349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3527475_3528339_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528427_3529249_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529328_3530066_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530062_3531055_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531207_3531831_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531875_3533024_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535347_3536298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536638_3537589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537687_3538638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538934_3539432_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539474_3541250_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541257_3542124_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542130_3542865_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544034_3544829_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545118_3545709_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545742_3547071_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547145_3548291_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548402_3549401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549363_3549798_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551314_3552199_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552195_3553401_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553397_3554258_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554370_3556161_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556201_3556846_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556867_3557176_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557341_3558628_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560061_3561012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562963_3564178_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564283_3565273_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565269_3565878_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565890_3566520_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566516_3567137_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567168_3567960_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568811_3569267_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569285_3570212_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570265_3571552_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572482_3573355_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573351_3574302_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574400_3575351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011181	Bordetella pertussis strain F687 chromosome, complete genome	4108495	4007563	4072475	4108495	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007563_4008049_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008137_4008275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008267_4009248_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009514_4010324_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010363_4011044_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011037_4011496_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011507_4011870_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011952_4012636_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012691_4013000_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013018_4013333_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013329_4015804_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015811_4017203_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017199_4017385_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017363_4018065_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018061_4018883_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018863_4019988_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019980_4021000_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021205_4022096_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022340_4023132_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023214_4023589_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023566_4024976_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024968_4026351_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026685_4028290_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028367_4029339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029349_4030276_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030666_4031617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031786_4033013_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033212_4034079_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034071_4035034_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035134_4036085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036183_4037134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037232_4038183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038179_4039673_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039669_4042777_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042773_4045842_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045838_4047089_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047269_4048022_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048063_4048708_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048716_4049697_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049796_4050540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050622_4050970_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051067_4051910_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051954_4052842_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052868_4053057_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053154_4054612_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054598_4056125_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056143_4056611_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056610_4057633_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057753_4058494_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058548_4059649_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059650_4060841_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060960_4061977_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062295_4062967_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062963_4063872_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064083_4064731_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068591_4069659_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069669_4070479_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070568_4071342_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071524_4072475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
