The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	27282	70036	4107481	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	77634	136108	4107481	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930158.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	164892	225439	4107481	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_077069167.1|184325_188036_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188096_188660_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188667_189090_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189117_189537_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189565_190039_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190138_190636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190790_193061_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193109_194342_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194440_195391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195493_196129_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196125_197019_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197413_198514_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198595_198970_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|199029_201894_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202038_202779_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202848_204060_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204088_205057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205670_206621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206777_207101_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207205_208246_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208251_209031_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209076_209373_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209398_209674_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209730_210375_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210374_211061_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211190_212042_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212092_212818_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212849_214199_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214310_215243_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215700_218496_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219089_222032_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222103_222823_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222861_223410_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223564_224464_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224488_225439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	233371	286959	4107481	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233371_234322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234408_235359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235355_236306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236404_237202_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238151_238562_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239583_240327_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240370_241414_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241584_243687_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245097_246054_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246072_246564_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246560_247916_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247916_248615_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248611_249313_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249565_250615_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250720_251662_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251658_253548_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253634_254273_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254415_255801_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255731_256268_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256419_257811_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257827_258808_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258943_259927_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259991_260891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260997_262752_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262759_263884_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263897_264878_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265608_266559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267118_267664_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267747_269367_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269382_270537_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270550_270676_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270672_272424_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272420_274100_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274162_274711_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275853_276132_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277175_278126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278403_278565_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278572_278713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279231_279681_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279690_280302_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280460_281315_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281334_282717_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282781_283423_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283562_284021_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284045_284822_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284875_286012_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|286008_286959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	555344	614644	4107481	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555344_556295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557618_558395_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558429_560202_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560203_561106_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561230_561590_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561621_562584_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562682_563633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563645_564581_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564640_565480_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565476_566646_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566642_567932_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567974_568349_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568454_569192_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569199_569904_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570167_571688_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571743_572307_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572325_573357_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573353_574142_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574162_574321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574317_575307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577063_578014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579236_580139_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580140_580995_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581041_582151_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582161_582680_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582709_583342_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583413_584073_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584069_585290_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585558_586431_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586586_587324_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587326_588958_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589053_590043_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590039_590750_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590845_591862_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592133_592760_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592815_593943_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593948_599666_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600233_601178_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601366_602302_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602419_603991_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604070_605279_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605776_606694_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609054_609276_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609606_610623_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610707_610959_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610962_611778_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611890_612769_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612880_614644_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	620799	674540	4107481	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620799_621750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621845_622817_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622821_623502_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623639_624032_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624139_625156_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625395_626181_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626275_627685_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627695_628496_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628516_629287_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629329_629797_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629793_630744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632692_633571_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634497_637476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637829_638780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638776_639865_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639900_640764_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641903_642293_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642296_643079_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643112_643898_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644173_645313_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645309_646101_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646097_646847_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646843_647716_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647715_648717_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648713_649877_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649902_650586_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650539_651874_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651866_652961_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653727_654678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656618_657878_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657874_659413_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659409_660606_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660602_661979_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661990_663007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663075_664311_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664411_665206_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665575_665983_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666400_666673_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666842_667067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667254_668109_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668209_668512_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668556_669174_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669190_669499_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669495_671211_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671213_671831_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671931_672516_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672540_673185_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673589_674540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	723478	765526	4107481	transposase,protease,tRNA,integrase	Pseudomonas_phage(33.33%)	30	720726:720744	740614:740632
720726:720744	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723478_724075_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724071_724854_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724926_726018_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726297_727425_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727766_728813_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728960_732080_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732081_735033_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735048_736260_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736443_737394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737410_737905_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737908_738166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738709_739621_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739702_739987_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740770_741721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740614:740632	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742139_744704_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744748_746602_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746934_748506_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749947_750898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750983_751724_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751950_752898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|754285_755236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|755334_756285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|756383_757334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|757527_758343_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|758475_759915_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|759928_760270_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|760324_761980_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|762131_763142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|763274_764048_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|764575_765526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	775453	823071	4107481	transposase,protease,tRNA,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_023852617.1|775453_776404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|776542_777295_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|777533_779258_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|779277_780537_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|780551_781646_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|781642_783769_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|783781_784462_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|784739_786113_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|786114_787134_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|787197_788169_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|788233_789184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|789282_790125_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|790124_790460_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|790530_791949_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|792228_793269_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|793348_793600_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|793710_794874_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|795157_796012_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|796008_796899_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|796941_797853_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|797879_798572_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|798586_799567_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|799579_801721_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|801769_802738_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|802728_803397_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|803357_804293_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|804289_805186_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|805182_805905_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|805895_806060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|806233_806737_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|807013_808129_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|808271_808736_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|808883_809423_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|809444_810779_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|810792_811098_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|811522_812104_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|812185_813136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|813234_814185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|814625_815531_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|815586_817191_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|817447_818953_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|818967_819432_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_077069169.1|819721_820672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|820834_821365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|821364_821676_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|822120_823071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	998931	1101324	4107481	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|998931_1000047_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1000147_1000966_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1001063_1001675_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1001834_1003211_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1003273_1003732_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1003816_1004512_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1004573_1004855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1005417_1006170_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1006214_1007291_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1007287_1008238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1008340_1009003_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1009097_1009268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1009620_1010622_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1010624_1011821_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1011841_1012645_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1012725_1013022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1013052_1013616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1013656_1014514_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1014521_1015271_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1015292_1016165_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1016193_1016973_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1017006_1017804_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1020458_1020851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1020844_1021705_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1021708_1022671_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1023447_1024137_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1024997_1025948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1026297_1027167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1027237_1027933_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1027922_1028432_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1028428_1029649_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1029596_1030499_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1031385_1032672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1032710_1034084_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1034122_1034824_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1035122_1036112_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1036212_1036674_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1036689_1037238_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1037379_1038855_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1038960_1040052_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1040055_1040838_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1040847_1041636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1042761_1043196_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1043192_1044203_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1044246_1045173_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1045459_1045828_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1046044_1046995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1047039_1049466_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1049514_1050207_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1050279_1051479_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1051496_1052402_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1052517_1053447_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1053472_1054819_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1054846_1055596_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1055609_1056392_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1056584_1057535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1057596_1058706_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1059218_1060055_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1060124_1061090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1061086_1062037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1062422_1062965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077069170.1|1064000_1064951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1065192_1065561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1065606_1066731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1067865_1068618_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1068709_1069330_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1069433_1070384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1070380_1072489_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1072633_1073293_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1073324_1073789_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1074064_1074250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1074301_1075054_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1075060_1076323_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1076364_1077603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1078680_1079808_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1079818_1080646_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1080632_1081499_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1082865_1083270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1083361_1084312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1084681_1085593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1085607_1086318_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1086314_1087559_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1087560_1087995_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1088023_1088329_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010929591.1|1088427_1089378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1089434_1090589_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1090663_1091614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1092145_1092943_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1092990_1093644_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1093600_1094689_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1094853_1097079_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1099356_1100253_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1100373_1101324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1131710	1202681	4107481	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1131710_1132661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1132717_1133830_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1136213_1137164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1137754_1138531_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1138648_1138912_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1139012_1140017_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1140217_1141819_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1141844_1142603_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1142694_1143351_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1143441_1144206_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1144215_1144404_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1144459_1145503_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1145499_1145913_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1145909_1146530_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1146810_1147761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147928_1149320_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1149392_1149971_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1150087_1151485_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1151600_1152806_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1152905_1153424_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1153518_1153764_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153991_1154306_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1154395_1159585_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1159581_1161750_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1161805_1164121_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1164125_1165445_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1165463_1167137_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1167141_1167810_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167966_1171788_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1172118_1173069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1173090_1174236_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1174384_1175314_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1175310_1176399_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1176395_1177199_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1177195_1177927_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177984_1179274_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1179370_1179973_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1184526_1184865_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1185572_1185839_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1187545_1188496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1188492_1189824_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1191084_1193085_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1193077_1193719_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1193715_1194123_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1194119_1194920_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194994_1195699_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1195730_1196525_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1196521_1197472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1197570_1198521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1198619_1199054_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1199136_1201473_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1201664_1202681_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1218886	1275588	4107481	transposase,tRNA	Agrobacterium_phage(20.0%)	42	NA	NA
WP_005012067.1|1218886_1219837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1219939_1220524_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1220593_1222015_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1222122_1223469_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010931082.1|1223507_1225142_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1225185_1225524_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1225548_1225923_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1229035_1229917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1230024_1231653_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1231694_1233212_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1233306_1234251_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1235427_1236330_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1236326_1237592_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1237636_1238182_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1238215_1238902_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1238873_1239803_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1239974_1240964_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1241028_1241313_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1241328_1242093_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1242089_1242596_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_005012067.1|1243757_1244708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1244806_1245757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1245844_1247497_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1247507_1248296_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1248295_1248766_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1248840_1250154_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1250207_1250813_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1251129_1252080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1252076_1253027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1253287_1254316_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1254395_1255694_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1255690_1256272_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1256584_1260631_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_077069171.1|1260871_1268533_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1268529_1269480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1270619_1271093_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1271232_1271853_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1271988_1272789_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1272843_1273935_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1273956_1274400_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1274428_1275061_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1275171_1275588_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 13
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1303955	1361166	4107481	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1303955_1304906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1308652_1309264_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1309486_1310947_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1311043_1312636_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1312989_1313247_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1313248_1314589_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1314684_1315374_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1315386_1316817_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1318541_1319363_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1319373_1320945_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1320973_1321951_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1321977_1322781_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1322777_1323572_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1323579_1324815_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1324807_1325242_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1325991_1326942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1327563_1329291_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1329402_1330761_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1331053_1332004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1332044_1333115_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1333137_1334016_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1334187_1335159_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1335321_1336164_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1336325_1337006_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1336999_1338169_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1338165_1339197_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1339240_1340482_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1340516_1342049_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1342129_1342753_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1342783_1343395_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1343430_1343901_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1344332_1345337_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1345373_1346888_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1346891_1347851_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1347879_1348683_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1348684_1350319_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1350402_1351464_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1351662_1351932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1351935_1352460_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1352875_1353826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1353822_1354857_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1354965_1355604_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1355898_1356126_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1356248_1356962_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1357206_1358157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1358260_1358542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1358656_1360105_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1360215_1361166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1451399	1503552	4107481	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1451399_1452350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1452516_1452870_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1452882_1453245_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1453286_1453712_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1453914_1455171_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1455369_1456350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1456499_1457741_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1457839_1458790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1458798_1459494_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1462315_1462915_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1462925_1465091_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1465114_1466899_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1466898_1466988_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1467682_1467955_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1467954_1470021_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1470017_1470968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1471066_1472017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1472132_1472465_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1472461_1473148_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1473134_1474094_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1474135_1476496_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1476495_1477128_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1477229_1478570_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1478616_1479972_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1480097_1480742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1480686_1481004_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1481276_1481792_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1481885_1482047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1482062_1482818_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1483156_1483363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1483370_1484030_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1484324_1486529_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1486639_1487863_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1487985_1488960_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1489027_1490221_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1490235_1491036_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1491032_1492889_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1492885_1493491_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1493509_1494895_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1495620_1496847_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1496935_1497718_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1497816_1498767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1498793_1499567_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1499578_1500820_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1502601_1503552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1547477	1615563	4107481	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1547477_1547966_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1548083_1548662_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1548767_1549136_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1549234_1550185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1550191_1551304_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1551990_1553193_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1553228_1553375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1553396_1556057_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1556069_1559474_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1560141_1562367_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1562413_1562740_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1562790_1563399_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1563497_1564448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1564517_1565282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1565278_1565878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1565981_1566833_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1566892_1567519_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1567515_1568466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1568564_1569677_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1569666_1570668_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1570773_1572285_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1572281_1573586_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1573697_1574258_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1574525_1575080_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1575535_1575751_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1576005_1578603_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1578599_1579787_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1580445_1581060_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1581148_1582276_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1582287_1583193_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1584085_1585036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1585217_1585970_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1586038_1586698_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1586694_1587423_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1587435_1589715_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1589739_1589943_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1589984_1590617_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1590752_1591670_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1591666_1592380_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1592617_1593388_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1593392_1593992_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1594236_1595727_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1595785_1596070_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1596207_1596363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1596635_1597562_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1597698_1598439_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1598605_1599982_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1600163_1601069_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1602720_1604523_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1604649_1605291_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1605389_1606340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1606361_1607582_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1607767_1609180_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1609243_1610311_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1610310_1611798_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1611807_1612752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1612911_1613610_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1613687_1614593_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1614612_1615563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	1651512	1707103	4107481	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1651512_1652463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1652521_1653295_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1653287_1654844_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1654840_1655791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1657117_1657720_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1657959_1658661_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1658654_1659437_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1659621_1660572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1660670_1661408_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1661597_1662356_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1662402_1663392_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1663569_1664538_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1666077_1667046_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1667054_1667996_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1668469_1669480_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1669470_1670985_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1670981_1672328_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1672330_1673365_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1673414_1675040_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1675592_1676543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1676647_1677595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1677648_1679463_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1679455_1680130_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1680259_1683334_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1683347_1683647_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1683961_1684585_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1684828_1685698_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1685675_1686620_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1686705_1687632_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1687744_1688524_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1688514_1689711_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1689741_1690692_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1690913_1691603_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1691667_1692423_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1692474_1693467_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1693476_1694430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1694545_1695508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1696909_1697338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1697334_1698285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1698578_1699316_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1699739_1700927_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1700930_1701311_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1703030_1704002_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1704015_1704729_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1704733_1705651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1705757_1706054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1706152_1707103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2027272	2084551	4107481	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|2027272_2028223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2028321_2030922_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2031028_2032033_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2032141_2033482_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2033522_2034551_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2034746_2035292_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2035288_2035849_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2035947_2036898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2036935_2037523_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2037540_2037924_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2039283_2040576_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2040710_2041751_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2041848_2042865_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2043132_2043780_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2043905_2044664_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2044648_2045428_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2045445_2046330_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2046326_2047106_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2047210_2047810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2048098_2048851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2048969_2050370_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2050393_2050792_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2050967_2051168_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2051306_2052035_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2052168_2053584_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2053587_2054451_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2054463_2055213_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2055395_2057411_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2057392_2058061_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2058835_2059786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2059934_2060273_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2060330_2060492_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2060523_2060724_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2060989_2063563_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2063633_2066183_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2068733_2069222_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2069313_2070465_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2070518_2071340_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2071378_2072608_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2072736_2073177_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2073287_2074238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2074234_2074708_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2074869_2075808_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2075809_2077018_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2077122_2077629_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2077631_2080493_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2080482_2081448_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2081507_2083502_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2083600_2084551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2135800	2195070	4107481	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2135800_2136751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2136875_2137685_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2137885_2138836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2140109_2141327_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2142383_2143286_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2143362_2144235_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2144365_2144734_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2144791_2145838_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2146033_2147290_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2147294_2148632_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2148781_2149738_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2149840_2150773_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2150888_2151209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2151201_2151561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2151608_2153183_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2153235_2154180_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2154197_2155028_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2155020_2156655_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2156651_2158007_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2158913_2160491_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2160494_2161769_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2161866_2162241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2163956_2165090_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2165127_2165733_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2165729_2166548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2166619_2169244_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2169230_2169485_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2169551_2170133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2170436_2170697_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2170862_2171486_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2171485_2172259_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2172255_2173464_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2173489_2173963_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2174036_2174987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2175085_2176036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2176134_2177484_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2178249_2179005_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2179097_2181980_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2182302_2182728_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2182755_2183904_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2183900_2184407_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2184413_2185709_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2185767_2187054_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2187055_2187694_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2187696_2188857_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2188883_2190239_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2190242_2191313_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2191451_2191688_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2191775_2192882_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2192847_2194152_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2194170_2195070_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2205310	2262807	4107481	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|2205310_2206261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2206359_2207310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2207509_2208595_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2208610_2209372_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2209368_2210328_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2210390_2210891_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2210923_2211667_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2211762_2212002_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2212015_2212168_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2212253_2213744_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2213835_2214774_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2214770_2214947_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2214949_2215612_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2217233_2217377_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2217373_2218348_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2218514_2219465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2219461_2220736_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2220839_2222033_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2222029_2222683_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2222679_2224116_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2224103_2224463_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162493101.1|2225277_2225418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|2226382_2228248_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2228505_2230026_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2230113_2230764_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2231712_2233008_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2233029_2233914_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2234012_2234888_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2234877_2235234_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2235364_2236339_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2236468_2236648_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2236745_2237270_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2237280_2238117_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2238229_2238601_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2238597_2239149_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2239164_2240856_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2240904_2241585_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2241832_2242297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2242466_2243396_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2243408_2244056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2244129_2245947_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2246030_2246981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2247633_2248584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2248602_2248950_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2248978_2250418_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2250436_2250832_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2251006_2251615_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2251627_2252446_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2252397_2253372_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2253400_2254462_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2254458_2256675_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2256688_2257147_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2257304_2257649_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2257805_2258711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2258797_2259811_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2261790_2262807_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2506138	2564382	4107481	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506138_2507089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507568_2508225_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508239_2509907_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509909_2510539_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510750_2511845_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511989_2512802_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512805_2514509_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514559_2515690_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515876_2516953_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517034_2517685_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517699_2519103_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519386_2520205_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520201_2520906_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521805_2522921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522954_2523329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523351_2524509_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524521_2524755_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525389_2528359_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528373_2528583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528734_2529364_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529360_2531451_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531474_2532155_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532151_2532712_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532718_2533816_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533968_2534562_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534558_2535851_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535864_2536407_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536416_2537253_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537286_2538348_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538389_2539442_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539457_2539760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539901_2540852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2541030_2542725_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542721_2543807_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543854_2544754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544764_2545409_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546430_2549673_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549683_2550838_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551064_2552027_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552125_2553076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553174_2554125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554134_2554824_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554883_2555321_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555366_2556260_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556307_2557480_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557476_2558631_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558827_2559178_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559167_2559602_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559618_2560569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560716_2561184_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561164_2562322_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562387_2563314_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563431_2564382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2606662	2673162	4107481	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606662_2607613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607982_2608555_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608557_2609568_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609560_2610061_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610071_2610413_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610424_2611216_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611232_2611502_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611524_2612313_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612359_2613376_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613592_2615035_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615213_2616833_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616953_2618774_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618852_2620385_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2620418_2622065_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622134_2623157_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623174_2624308_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624310_2625000_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624999_2625785_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625828_2626593_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626631_2628053_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628118_2628823_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628870_2629290_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629302_2629710_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629893_2630604_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630730_2631021_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631038_2631521_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2636026_2637181_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637486_2638503_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638749_2639538_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639604_2640285_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640281_2641052_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641150_2642101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642156_2643074_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643084_2644263_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644282_2645278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646866_2647475_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647462_2648503_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648520_2649483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649479_2650673_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650669_2651467_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651492_2652479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652497_2654537_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654738_2655419_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655432_2656344_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656340_2656919_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657057_2657963_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657970_2661390_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661377_2663978_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664933_2665566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665959_2666718_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666714_2667917_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668104_2669055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669962_2671108_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671094_2671850_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671966_2672146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672211_2673162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2871501	2944827	4107481	transposase,protease,tRNA	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2871501_2872857_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874335_2875058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875112_2876096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876225_2877176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877172_2878075_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878162_2878921_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878933_2880025_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880122_2881550_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881779_2882994_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883039_2885910_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888320_2888809_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888934_2891631_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891785_2894068_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2894242_2894866_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_005012067.1|2894964_2895915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895961_2896516_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896583_2897429_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897498_2898467_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2898466_2899330_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2902162_2906089_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2906824_2910055_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910336_2911164_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911197_2911893_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2911885_2913166_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913175_2914153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914134_2915835_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2915937_2917041_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917071_2917827_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2917833_2919354_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919396_2919699_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919695_2920328_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920406_2922272_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922268_2923063_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923091_2924207_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925111_2925990_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925989_2926814_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926981_2927932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928144_2930994_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930975_2931704_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931844_2933308_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933304_2933676_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933693_2935007_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935043_2935502_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935614_2936565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936561_2937575_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937714_2938701_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939059_2939767_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940347_2941298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941449_2942052_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942070_2942703_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942747_2942999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942940_2944827_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	2956552	3006165	4107481	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2956552_2957503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957529_2957994_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959200_2961489_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961605_2962478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962520_2963675_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963709_2964540_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964623_2966168_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966210_2966570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966571_2966985_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967025_2967343_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967427_2968144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968407_2969829_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969895_2972643_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972975_2973992_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974327_2974969_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975059_2976496_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976653_2977727_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977723_2978860_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2979004_2979349_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979415_2981296_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981345_2982281_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2982613_2983630_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984567_2985995_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985991_2987014_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987003_2987477_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987617_2988505_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988501_2990145_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2990141_2991191_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991979_2992996_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993095_2993728_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993736_2994126_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994178_2995231_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996094_2997801_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997874_2998375_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998389_3000447_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000473_3000767_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000868_3001816_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001828_3002704_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002824_3003385_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003419_3003743_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004178_3004916_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005214_3006165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	3027116	3099604	4107481	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3027116_3028067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028109_3029285_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029506_3031297_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031309_3032971_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032983_3035689_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035981_3037736_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037732_3038359_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038355_3039207_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3039282_3041397_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041583_3042198_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042343_3042595_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042664_3044047_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044043_3047223_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3048030_3048948_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048999_3049731_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049790_3050363_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051871_3052888_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3053025_3054075_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054179_3055130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055225_3055951_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056161_3056542_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3056847_3057720_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3057727_3058108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058261_3059536_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3061023_3061932_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3062729_3063794_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3065624_3066626_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3066848_3067490_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067572_3069399_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3069642_3070572_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070571_3071321_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071392_3072307_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072326_3073472_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073532_3074444_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074524_3075475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075573_3076158_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076192_3077182_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077178_3078120_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078116_3079337_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079379_3079694_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079885_3080245_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080246_3081962_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082149_3082821_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082835_3084164_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084160_3085060_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085146_3086232_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3086224_3087358_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3087357_3090039_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090409_3090991_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091116_3091842_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091838_3092516_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092731_3093913_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094685_3094868_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094897_3095848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095977_3096370_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096646_3097558_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097682_3098657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098653_3099604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	3113111	3166629	4107481	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3113111_3114062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114174_3114426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3114931_3116050_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116169_3116382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116541_3116763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3116815_3117766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3118942_3120313_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120345_3121137_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121149_3122205_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122230_3123106_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123211_3123460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123494_3124949_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3124945_3125467_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125495_3126848_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127071_3129960_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132104_3133406_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3133420_3134137_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134418_3135099_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3135110_3135278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3135386_3135533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3135626_3136286_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3136684_3138517_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138513_3139464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3140627_3142343_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3142353_3142845_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3142917_3143934_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3144101_3144881_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3144899_3145427_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3145720_3145990_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3146080_3148240_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3148360_3149080_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3149076_3150027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3150167_3151385_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3151378_3151990_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3152623_3153601_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3153744_3154491_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3154512_3154959_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3155746_3157978_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3158000_3158801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3159082_3160315_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3160425_3161415_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3161445_3162834_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3164432_3165416_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3165612_3166629_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	3231087	3304249	4107481	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3231087_3232038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232034_3233054_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233063_3235772_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235919_3236576_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236674_3237625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237772_3238666_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238865_3240560_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240594_3241521_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241589_3242687_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242705_3243569_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243580_3244363_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244359_3245478_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245474_3247007_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247047_3248055_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248199_3248922_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248937_3249960_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250276_3251011_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251095_3252841_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252837_3253590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253634_3254591_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254679_3255246_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255253_3256114_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256143_3256872_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256903_3257587_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258424_3259339_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259403_3260312_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260402_3261827_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261828_3263151_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263147_3265286_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265363_3270484_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270584_3270893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270962_3271520_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_077069174.1|3271535_3273017_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3275187_3276525_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276559_3278557_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278574_3280623_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280753_3281620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281888_3282854_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282968_3284117_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3284541_3284853_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284886_3285147_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285296_3286430_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286500_3287637_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287802_3288597_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288659_3289103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289218_3290169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3290270_3290699_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3290771_3292967_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293188_3294139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294098_3294623_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294754_3295726_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295845_3298290_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298305_3298896_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299139_3300090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3300247_3301513_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3301546_3302644_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3303298_3304249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	3315536	3417747	4107481	transposase,tRNA,terminase,protease,tail	uncultured_Caudovirales_phage(14.29%)	109	NA	NA
WP_005012067.1|3315536_3316487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317218_3317596_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317580_3318282_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318425_3319118_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319117_3320221_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320330_3322703_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322699_3324259_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324283_3325081_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325112_3326258_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326362_3327805_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327807_3329037_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331174_3332125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333254_3333812_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333787_3334138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334306_3335101_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335097_3336147_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336146_3336836_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336922_3337420_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337451_3338768_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338784_3339759_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339795_3340254_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340253_3340934_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340936_3341365_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341417_3343148_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343213_3343786_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343766_3344453_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344808_3345480_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345808_3346030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346029_3346311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346307_3346823_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346822_3347374_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347352_3347595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347599_3348412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348411_3348675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348715_3348913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348893_3349310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349314_3353271_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353263_3353653_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353649_3354183_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354250_3354610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354619_3357232_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357257_3357548_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357565_3357895_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357904_3358423_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358677_3359178_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359185_3359608_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359604_3360003_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359999_3360395_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3360394_3360595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360596_3361079_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361141_3361393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362067_3363018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363446_3364049_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364171_3364414_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364419_3365475_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365503_3366922_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366924_3368202_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368188_3368674_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369313_3370264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370520_3371210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371202_3371454_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3372008_3372620_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372691_3372898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373149_3374100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3374198_3375149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375247_3376321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376488_3377283_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377322_3377847_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377839_3379582_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379791_3380550_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380552_3381260_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381276_3382158_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382168_3382927_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382895_3383651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383720_3385139_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385160_3385811_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385944_3386280_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930048.1|3386368_3387319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930800.1|3387417_3388368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388444_3390265_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390269_3391343_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391465_3392434_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392507_3393419_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393437_3394010_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394090_3394639_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394638_3396228_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396297_3396537_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396577_3397603_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397668_3398850_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398946_3399399_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399408_3400749_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401065_3402103_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402484_3402844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402927_3403869_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403943_3404894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405187_3406282_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406363_3407245_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407266_3408106_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408181_3409699_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409795_3410896_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410912_3411335_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3411357_3411570_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411616_3412537_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412719_3413469_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413471_3413801_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3414007_3415441_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415452_3415836_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415897_3416698_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416796_3417747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011178	Bordetella pertussis strain F658 chromosome, complete genome	4107481	4028603	4071461	4107481	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_010931661.1|4028603_4029554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029723_4030950_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031149_4032016_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032008_4032971_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033071_4034022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034120_4035071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035169_4036120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036116_4037610_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037606_4040714_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040710_4043779_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043775_4045026_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045206_4045968_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046000_4046651_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046653_4047493_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047733_4048477_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048559_4048907_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049004_4049847_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049891_4050779_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050805_4050994_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051091_4052549_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052535_4054062_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054080_4054548_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054547_4055570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055690_4056410_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056485_4057586_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057587_4058778_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058897_4059914_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060232_4060904_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060900_4061809_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062020_4062668_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066519_4067596_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067606_4068416_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068505_4069279_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930522.1|4069461_4070412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|4070510_4071461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
