The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	27282	70036	4105889	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	77634	136108	4105889	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	166498	227009	4105889	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|166498_167449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168892_169795_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169772_170402_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170684_172115_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172148_172778_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172826_174434_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174458_175142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175223_175700_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175906_176857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177972_178500_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178591_179407_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179467_180202_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180239_182318_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182567_182840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182941_184027_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184030_185935_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185931_189606_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189666_190230_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190237_190660_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190687_191107_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191135_191582_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191708_192206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192360_194631_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194706_195912_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|196010_196961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197063_197699_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197695_198589_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198983_200084_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200165_200540_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200599_203464_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203608_204349_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204418_205630_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205658_206627_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207240_208191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|208347_208671_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208775_209816_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209821_210601_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210646_210943_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210968_211244_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|211300_211945_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211944_212631_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212829_213612_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213662_214388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|214419_215769_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215880_216813_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|217270_220066_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220659_223503_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223673_224393_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224431_224980_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225134_226034_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226058_227009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	234941	288529	4105889	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234941_235892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235978_236929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236925_237876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237974_238772_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239721_240132_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241153_241897_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241940_242984_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243154_245257_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246667_247624_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247642_248134_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248130_249486_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249486_250185_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250181_250883_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251135_252185_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252290_253232_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253228_255118_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255204_255843_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255985_257371_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257301_257838_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257989_259381_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259397_260378_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|260513_261497_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261561_262461_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262567_264322_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264329_265454_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265467_266448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267178_268129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268688_269234_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269359_270937_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270952_272107_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272120_272246_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272242_273994_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273990_275670_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275732_276281_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277423_277702_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278745_279696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279682_279898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279973_280135_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280801_281251_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281260_281872_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282030_282879_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282904_284287_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284351_284993_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285132_285591_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285615_286392_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286445_287582_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287578_288529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	392462	449971	4105889	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|392462_393413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|393549_394467_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394463_394712_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394708_395914_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395986_396982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397004_398225_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398221_398866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400596_401406_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401710_402664_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402762_403746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403672_404374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404422_405193_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405189_406368_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|406535_408242_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408238_409135_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409175_410765_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410814_411807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411875_412475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412935_413916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413991_414942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|415030_415945_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415941_416601_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416690_417614_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417619_418075_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|418071_419175_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|419133_419403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|419362_420982_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420978_422037_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|422166_422661_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422753_423731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423926_425132_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425128_426640_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426655_427969_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428159_428339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428748_429483_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431927_432878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|433009_433408_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433818_434289_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|434377_434722_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434821_436222_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|438010_438529_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438639_439395_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439590_440823_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440815_441601_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441667_442639_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442649_443627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443752_444925_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444951_445980_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|446045_447239_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|449020_449971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	592025	653216	4105889	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|592025_592976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|593451_594342_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594338_595160_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595359_595851_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595869_596943_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596989_598093_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598168_598789_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598809_599319_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599373_599625_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599688_600822_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600829_601216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|601212_603732_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604160_604499_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604495_605002_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605063_605864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605974_606916_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607009_608545_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610224_612075_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612078_612912_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612911_613853_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|614104_615076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615217_617506_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617812_618721_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618775_619741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619815_621477_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|621548_622259_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|622407_623358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624056_624440_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624497_625100_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625117_625519_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625634_626546_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|626542_627124_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627918_628653_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628693_629743_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629890_630469_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630855_631833_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631926_636321_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|636521_637370_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|637528_638341_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638396_639347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|639445_640246_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640307_640691_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640702_642055_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|642342_642672_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642674_643424_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643606_644527_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644573_644786_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644808_645231_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|645247_646348_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646444_647962_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648037_648877_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648898_649771_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649861_650956_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651249_652200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652274_653216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	658540	704731	4105889	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|658540_659566_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659606_659846_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659915_661505_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661504_662053_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662133_662706_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662724_663636_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663709_664678_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664800_665874_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665878_667699_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667775_668726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668814_669150_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669283_669934_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669955_671374_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671443_672199_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672167_672926_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672936_673818_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673834_674542_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|674544_675303_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|675512_677255_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677247_677772_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677811_678606_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678773_679847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929853.1|679945_680896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681147_681354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681425_682037_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682591_682843_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682835_683525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683781_684732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|685371_685857_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685843_687121_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687123_688542_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688570_689626_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689631_689874_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689996_690599_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691027_691978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692652_692904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692966_693449_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|693462_693651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693650_694046_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694042_694441_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694437_694860_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694867_695368_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695622_696141_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696150_696480_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696497_696788_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696813_699426_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699435_699795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699862_700396_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700392_700782_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700774_704731_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	710897	764827	4105889	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710897_712628_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712680_713109_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713111_713792_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713791_714250_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714286_715261_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715277_716594_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716625_717123_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717209_717899_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717898_718948_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_077085661.1|718944_719739_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719907_720258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720233_720791_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721920_722871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725008_726238_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726240_727683_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727787_728933_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728964_729762_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729786_731346_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731342_733715_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733824_734928_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734927_735620_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735763_736465_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736449_736827_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_010929591.1|737558_738509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738668_739541_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739881_740100_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740139_741519_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741560_742958_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742997_744650_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744653_745538_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|745537_746479_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746557_748177_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748343_749159_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749226_749796_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749796_750747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751401_752499_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|752532_753798_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753955_754906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755149_755740_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755755_758200_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758319_759291_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759422_759947_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759906_760857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761078_763274_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763346_763754_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763876_764827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	855705	916581	4105889	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|855705_856656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856673_857228_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857229_857664_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857660_858095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858078_858882_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858898_859714_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|859710_860526_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860672_861374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861401_863360_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863442_864393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864613_865282_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865405_866512_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|866524_869638_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869634_871128_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871142_871814_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871857_872352_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872492_873140_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873243_875292_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875288_877301_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877326_878661_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878769_879762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879828_881913_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881937_882909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|883037_884069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|884072_885224_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885394_886318_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886395_887220_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887416_888433_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888629_889613_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891211_892600_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892630_893620_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893730_894963_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895244_896045_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896067_898299_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899086_899533_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899554_900301_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900444_901422_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902055_902667_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902660_903878_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904018_904969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904965_905685_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905805_907965_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908055_908325_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908413_908620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908618_909146_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909164_909944_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910111_911128_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911200_911692_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911702_913418_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914581_915532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|915630_916581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	937328	1000921	4105889	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_010929591.1|937328_938279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|938331_938553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938712_938925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|939044_940163_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|940259_940475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940668_940920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|941032_941983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941979_942363_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|942417_944232_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|944381_945209_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|945254_946235_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|946231_946444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|946440_947622_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947785_948520_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|948521_951134_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|951269_953183_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953798_954209_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|954306_955392_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|955490_956441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|956437_957412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|957536_958448_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958724_959117_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|959246_960197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|960226_960409_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|961181_962363_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962578_963256_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|963252_963978_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|964103_964685_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|965055_967737_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|967739_968870_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|968862_969948_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|970034_970934_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970930_972259_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|972273_972945_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|973132_974848_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974849_975209_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|975400_975715_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975757_976978_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976974_977916_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977912_978902_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978936_979521_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979619_980570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980650_981562_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981622_982768_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982787_983702_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983773_984523_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|984522_985452_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985695_987522_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987604_988246_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|988435_989470_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|991306_992371_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|993168_994077_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995564_996839_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996992_997373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|997380_998253_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998558_998939_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|999149_999875_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999970_1000921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1027033	1088529	4105889	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	55	NA	NA
WP_010929584.1|1027033_1027984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028082_1028823_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029017_1031054_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031071_1032082_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032199_1033393_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033422_1034196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034192_1035383_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035408_1036347_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036343_1038692_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038846_1039488_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040817_1040970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1041001_1041550_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041568_1042054_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1042231_1043170_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1043172_1043490_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1043535_1044480_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1046160_1046811_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046864_1047200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1047196_1048057_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1048073_1048355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1048428_1048692_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048935_1049886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050184_1050922_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051357_1051681_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051715_1052276_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052396_1053272_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053284_1054232_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054333_1054627_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054653_1056711_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056725_1057226_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057299_1059006_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059869_1060922_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060974_1061364_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061372_1062005_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062104_1063121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063951_1064959_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064955_1066599_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066595_1067483_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067623_1068097_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068086_1069109_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069105_1070533_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071470_1072487_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072819_1073755_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073804_1075685_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075751_1076096_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076240_1077377_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077373_1078447_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078604_1080041_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080131_1080773_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1081108_1082125_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1082457_1085205_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1085271_1086693_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086956_1087673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087757_1088075_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088115_1088529_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 12
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1097597	1160136	4105889	tRNA,transposase	Planktothrix_phage(18.18%)	48	NA	NA
WP_005013747.1|1097597_1098548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098915_1099692_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099736_1100594_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100615_1101632_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101766_1102807_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103001_1105083_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105318_1106812_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107042_1107837_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108057_1109416_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109412_1110255_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110273_1112160_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112101_1112353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112397_1113030_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113048_1113651_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1113802_1114753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115333_1116041_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116399_1117386_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1117525_1118539_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1118535_1119486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119598_1120057_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120093_1121407_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121424_1121796_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121792_1123256_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123396_1124125_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124106_1126956_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127168_1128119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128286_1129111_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129110_1129989_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130893_1132009_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132037_1132832_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132828_1134694_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134772_1135405_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135401_1135704_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135746_1137267_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137273_1138029_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138058_1139163_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139265_1140966_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140947_1141925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141934_1143215_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143207_1143903_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143936_1144764_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145045_1148276_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149011_1152938_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154837_1156634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156633_1157602_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157671_1158517_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158584_1159139_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159185_1160136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1319557	1384986	4105889	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1319557_1320508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321276_1321915_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322804_1323251_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323332_1324034_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324034_1324802_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324798_1326037_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326036_1326963_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327065_1328181_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328196_1329147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329500_1330082_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330078_1330912_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331122_1332436_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332612_1333494_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1333513_1334365_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334417_1335506_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335616_1336744_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336978_1337590_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337688_1338639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338860_1339238_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339385_1339883_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339879_1340407_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1340540_1341356_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341368_1342550_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342597_1343491_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343617_1344088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344213_1345041_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345069_1345846_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345842_1346118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346132_1346597_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346608_1347310_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347419_1347920_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348002_1349181_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350808_1351144_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351331_1352780_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352837_1353182_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353288_1353828_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353920_1354871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354969_1355920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1356018_1356426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356658_1357090_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357271_1357676_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358912_1359236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359238_1360126_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360158_1360584_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360655_1361009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361248_1361755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361793_1363125_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363184_1364000_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363996_1364851_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367913_1370457_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371823_1373578_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373574_1375695_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375699_1377895_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377891_1381233_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384035_1384986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1449575	1505063	4105889	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449575_1450526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451727_1452174_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452166_1453642_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453638_1454394_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454386_1455397_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455386_1457063_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457375_1457708_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457721_1458117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458126_1458453_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458449_1458776_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458702_1459725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459721_1460072_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460119_1460548_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460555_1461929_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462069_1462447_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462709_1464017_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464077_1464908_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464904_1465393_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465434_1466955_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466998_1467475_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468278_1470876_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470905_1471727_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472453_1473203_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473386_1474265_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474362_1475079_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475093_1475654_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475820_1476585_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476604_1477462_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477458_1478658_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478697_1480032_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480084_1482421_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482546_1483110_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483118_1484210_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484281_1484737_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484737_1485532_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1485528_1486710_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486696_1487302_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487298_1488072_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488083_1488911_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489072_1491436_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1491503_1492223_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492346_1492772_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492806_1493757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493874_1494801_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494866_1496024_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496004_1496472_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496619_1497570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497586_1498021_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498010_1498361_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498557_1499712_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499708_1500881_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500928_1501822_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501867_1502305_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502364_1503054_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503063_1504014_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504112_1505063_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1599760	1667847	4105889	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1599760_1600249_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1600366_1600945_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1601050_1601419_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1601517_1602468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1602474_1603587_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1604273_1605476_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605679_1608340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1608352_1611757_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1612424_1614650_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614696_1615023_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1615073_1615682_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615781_1616732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616801_1617566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617562_1618099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1618265_1619117_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619176_1619803_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619799_1620750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620848_1621961_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621950_1622952_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623057_1624569_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624565_1625870_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625981_1626542_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626809_1627364_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627819_1628035_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628289_1630887_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630883_1632071_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632729_1633344_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1633432_1634554_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634571_1635477_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1636369_1637320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1637501_1638254_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638322_1638982_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638978_1639707_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639719_1641999_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642023_1642227_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1642268_1642901_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1643036_1643954_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643950_1644664_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644901_1645672_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645676_1646276_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1646520_1648011_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648069_1648354_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648919_1649846_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649982_1650723_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650889_1652266_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652447_1653353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1655004_1656807_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656924_1657575_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657673_1658624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658645_1659866_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1660051_1661464_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1661527_1662595_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662594_1664082_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1664091_1665036_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1665195_1665894_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665971_1666877_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666896_1667847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1703796	1751612	4105889	transposase	Brazilian_cedratvirus(33.33%)	40	NA	NA
WP_005013747.1|1703796_1704747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704805_1705579_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705571_1707128_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1707124_1708075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1709401_1710004_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710243_1710945_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710938_1711721_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711905_1712856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712954_1713692_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713881_1714640_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714686_1715676_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715853_1716822_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718361_1719330_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719338_1720280_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_077085662.1|1720276_1721758_+	DUF4381 family protein	NA	NA	NA	NA	NA
WP_010930477.1|1721748_1723263_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723259_1724606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724608_1725643_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725692_1727318_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727870_1728821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728925_1729873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729926_1731741_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731733_1732408_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732537_1735612_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735625_1735925_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1736239_1736863_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1737106_1737976_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737953_1738898_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738983_1739910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1740022_1740802_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740792_1741989_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1742019_1742970_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1743191_1743881_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743945_1744701_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744752_1745745_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745754_1746708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746823_1747786_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749187_1749616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749612_1750563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1750661_1751612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	1993190	2062842	4105889	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1993190_1995848_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995925_1997128_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1997124_1997637_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997759_1998197_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1998473_1999424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1999522_2000473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000636_2002532_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002645_2002813_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002876_2003113_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2003481_2004633_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2006196_2007147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007598_2008600_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008772_2009630_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009626_2010889_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010989_2011364_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2011436_2012624_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012708_2013479_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013592_2014357_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2014307_2015609_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015605_2016412_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2018156_2019128_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019284_2019797_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019955_2020930_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021930_2022725_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022750_2023557_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023667_2024258_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2024268_2025447_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025549_2025924_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2026176_2027508_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027574_2030805_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2032295_2033042_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2033126_2033588_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033625_2034684_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034646_2036476_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2036515_2037088_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2038512_2039334_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039652_2040975_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2041334_2041970_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041929_2042880_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043750_2044623_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044700_2045840_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2046198_2047455_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2047460_2047988_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047992_2048811_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048810_2049533_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049554_2049869_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049886_2051035_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2051065_2051941_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051937_2053257_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2053329_2054526_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054536_2056024_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058618_2059518_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059655_2060621_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060719_2061670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061891_2062842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2074339	2123735	4105889	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2074339_2075290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2076427_2076724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076898_2078251_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2078393_2079410_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2081389_2082403_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2082489_2083395_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083551_2083896_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2084053_2084512_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2084525_2086742_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086738_2087800_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087828_2088803_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088754_2089573_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089585_2090194_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2090368_2090764_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090782_2092222_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2092250_2092598_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092616_2093567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2094219_2095170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2095253_2097071_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2097144_2097792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097804_2098734_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098903_2099368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099615_2100296_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2100344_2102036_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2102051_2102603_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102599_2102971_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2103083_2103920_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103930_2104455_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104552_2104732_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104861_2105836_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105966_2106323_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2106312_2107188_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2107286_2108171_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2108192_2109488_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2110436_2111087_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2111174_2112695_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112952_2114818_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115863_2116814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116831_2116972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117786_2118146_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2118133_2119570_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119566_2120220_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2120216_2121410_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2121513_2122788_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122784_2123735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2134939	2175630	4105889	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2134939_2135890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135988_2136939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136898_2137312_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137596_2137896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2138305_2140588_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2141053_2141248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2141273_2143304_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2143323_2143536_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143813_2144353_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2144466_2145762_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145838_2146996_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2147179_2148079_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2148097_2149402_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2149367_2150474_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150561_2150798_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150936_2152007_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2152010_2153366_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2153392_2154550_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154555_2155194_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2155195_2156491_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2156540_2157827_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157842_2158349_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2158345_2159494_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2159521_2159947_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2160269_2163152_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2163244_2164000_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164765_2166115_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2166213_2167164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2167262_2168213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2168286_2168760_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168785_2169994_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169990_2170764_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170763_2171387_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171552_2171813_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2172116_2172698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172764_2173019_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2173005_2175630_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2203413	2268962	4105889	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2203413_2204364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204564_2205374_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2205498_2206449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2206445_2207339_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2207463_2207658_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207657_2207999_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2208008_2209871_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2210000_2210513_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2210515_2210839_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210840_2211251_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2211288_2212500_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2212517_2213030_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2213245_2213737_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213989_2216026_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2216103_2217306_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2217434_2218085_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219642_2220593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2221163_2221376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2221393_2222125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2222159_2222801_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222793_2223462_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225674_2226451_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2226472_2227630_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227626_2228058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2228054_2228852_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228871_2229273_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2229339_2230311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2230376_2231600_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231827_2232778_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232901_2235355_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235543_2236848_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236952_2237606_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237608_2238919_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2239097_2239676_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239787_2239988_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2240333_2240900_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240983_2241187_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2241493_2241814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241855_2242137_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2242211_2243468_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243850_2244180_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245750_2246572_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246571_2247711_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247717_2248614_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2248628_2250536_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250895_2253508_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253560_2255861_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255857_2257066_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2257327_2257702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257698_2258649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258747_2260742_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260801_2261767_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261756_2264618_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264620_2265127_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2265231_2266440_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2266441_2267380_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267541_2268015_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929584.1|2268011_2268962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2536767	2602488	4105889	tRNA,transposase,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536767_2538711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538707_2539628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539647_2540235_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2540227_2541118_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2541114_2541876_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541881_2542766_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542788_2544582_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544712_2546200_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546237_2547296_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2547295_2547796_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547808_2548408_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548404_2548905_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548906_2550136_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550325_2550565_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550747_2551500_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2551501_2552437_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2552518_2553505_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2553504_2554563_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554619_2554802_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554853_2555447_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555555_2556155_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556151_2556862_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556863_2557691_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2559507_2560749_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560760_2561534_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561560_2562511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562609_2563392_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563480_2564707_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565432_2566818_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566836_2567442_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567438_2569295_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569291_2570092_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570106_2571300_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571367_2572342_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572464_2573688_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573798_2576003_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576297_2576957_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576964_2577171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2577509_2578265_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2578535_2579051_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579323_2579641_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579828_2580065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580355_2581711_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581757_2583098_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583199_2583832_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583831_2586201_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586233_2587193_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587179_2587866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587862_2588195_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588310_2589261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589359_2590310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590306_2592373_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592372_2592645_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593339_2593429_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593428_2595213_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595236_2597402_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597412_2598012_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600833_2601529_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2601537_2602488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2688605	2729274	4105889	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688605_2689556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689666_2689849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689948_2690545_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690728_2691820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692319_2692730_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692788_2693118_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693135_2695553_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695565_2696588_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696662_2697022_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697037_2697235_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012808.1|2697570_2698521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698715_2699165_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699161_2700112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700222_2701671_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701785_2702031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702170_2703121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703365_2704079_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704201_2704429_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704723_2705362_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705470_2706505_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2706501_2707452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707867_2708392_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708395_2708665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708863_2709925_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710008_2711643_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711644_2712448_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712476_2713436_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713439_2714954_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714990_2715995_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716426_2716897_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716932_2717544_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717574_2718198_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718278_2719811_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719845_2721063_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721130_2722162_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722158_2723328_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723321_2724002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724163_2725006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725168_2726140_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726311_2727190_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727212_2728283_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728323_2729274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2784739	2857609	4105889	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784739_2785156_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785266_2785899_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785927_2786371_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786392_2787484_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787538_2788339_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788474_2789095_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789234_2789708_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790847_2791798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791794_2799456_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799696_2803743_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804055_2804637_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804633_2805932_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806011_2807040_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807300_2808251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808247_2809198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809514_2810120_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810173_2811487_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811561_2812032_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812031_2812820_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812830_2814483_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814570_2815521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816682_2817189_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817185_2817950_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817965_2818250_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818314_2819304_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819475_2820405_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820376_2821063_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821096_2821642_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821686_2822952_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822948_2823851_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825032_2825977_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826071_2827589_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827630_2829259_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829366_2830248_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833360_2833735_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833759_2834098_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834141_2835776_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835814_2837161_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837268_2838690_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838759_2839344_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839446_2840397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840531_2841638_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841648_2842746_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842890_2844096_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844102_2844624_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844620_2845103_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845108_2845360_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845340_2845826_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845961_2849423_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849440_2850325_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850334_2850766_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851012_2851516_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851593_2852994_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853068_2853944_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853940_2854948_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855415_2855721_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855811_2856402_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856592_2857609_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2860752	2927563	4105889	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2860752_2861703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861801_2862752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862748_2863543_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863574_2864279_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864353_2865154_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865150_2865558_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865554_2866196_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866188_2868189_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869449_2870781_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870777_2871728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873434_2873701_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874408_2874747_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879300_2879903_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879999_2881289_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881346_2882078_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882074_2882878_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882874_2883963_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883959_2884889_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885037_2886183_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886204_2887155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887485_2891307_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891463_2892132_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892136_2893810_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893828_2895148_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895152_2897468_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2897523_2899692_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899688_2904869_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904967_2905282_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905509_2905755_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905849_2906368_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906467_2907673_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907788_2909186_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909302_2909881_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909953_2911345_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911512_2912463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912743_2913364_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913360_2913774_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913770_2914814_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914869_2915058_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915067_2915832_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915922_2916579_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916670_2917429_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917454_2919056_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919256_2920261_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920361_2920625_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920742_2921519_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922109_2923060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925443_2926556_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2926612_2927563_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	2957949	3001640	4105889	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2957949_2958900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959020_2959917_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962194_2964420_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964584_2965673_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965629_2966283_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966330_2967128_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967659_2968610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968690_2969839_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969895_2970846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970944_2971250_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971278_2971713_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971714_2972959_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972955_2973666_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973680_2974592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974954_2975359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975355_2975814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975820_2976729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976725_2977592_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977578_2978406_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978416_2979544_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980621_2981860_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981901_2983164_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983170_2983923_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983974_2984160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984435_2984900_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984931_2985591_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985735_2987844_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987840_2988791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988894_2989515_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989618_2990359_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991493_2992618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992663_2993032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993273_2994224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995259_2995802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996187_2997138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997134_2998043_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998169_2999006_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2999518_3000628_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000689_3001640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	3186058	3248292	4105889	transposase,protease	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3186058_3187009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3187017_3187566_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
WP_003814557.1|3187562_3188171_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852720.1|3188353_3188812_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3188830_3190090_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3190142_3190955_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3191069_3191624_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3191633_3192623_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3192802_3193522_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3193538_3196274_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3196453_3197440_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_003814566.1|3197481_3197976_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3198087_3199011_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3199239_3200424_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3200612_3201839_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3201843_3202665_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3202677_3203628_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3203624_3205031_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3205027_3206101_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3206097_3207291_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3207287_3208820_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3208816_3209986_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3209975_3212813_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3212809_3214540_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3214536_3214815_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3214814_3215909_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3215917_3216346_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3217148_3218957_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3218996_3220076_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3220072_3221266_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3221415_3221694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995307.1|3222023_3222389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3229140_3229617_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3229769_3230882_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3230949_3231510_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3231533_3231866_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3231849_3233538_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3233657_3234446_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3235153_3236104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3236548_3236860_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236859_3237390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3237552_3238503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238792_3239257_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3239271_3240777_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_077085666.1|3241030_3242638_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242693_3243599_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3244039_3244990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245071_3245653_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246077_3246383_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246396_3247731_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3247752_3248292_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 27
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	3266715	3318634	4105889	tRNA,transposase,holin	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3266715_3267051_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267050_3267893_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3267991_3268942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269006_3269978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270041_3271061_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271062_3272436_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3272713_3273394_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3273469_3275533_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3275529_3276624_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3276638_3277898_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3277917_3279606_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3279880_3280633_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3280771_3281722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282034_3283513_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3283519_3284629_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3284640_3285321_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285342_3286098_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286233_3287118_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287205_3287787_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288047_3288347_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288498_3288978_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3289697_3291134_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291130_3291634_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3291649_3292600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293127_3293901_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294033_3295044_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295195_3296851_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3296905_3297247_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297260_3298700_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3298832_3299648_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3299841_3300792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302179_3303127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303353_3304094_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3304179_3305130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3306571_3308143_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308475_3310329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3310373_3312938_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313356_3314307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3317172_3317667_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3317683_3318634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	3380537	3434278	4105889	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380537_3381488_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381892_3382537_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382561_3383146_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383246_3383864_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383866_3385582_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385578_3385887_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385903_3386521_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386565_3386868_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386968_3387823_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388010_3388235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388404_3388677_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389094_3389502_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389871_3390666_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390766_3392002_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392070_3393087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393098_3394475_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394471_3395668_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395664_3397203_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397199_3398459_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400399_3401350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402116_3403211_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403203_3404538_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404491_3405175_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405200_3406364_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3406360_3407362_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407361_3408234_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408230_3408980_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408976_3409768_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409764_3410904_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411179_3411965_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411998_3412781_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412784_3413174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414313_3415177_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415212_3416301_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416297_3417248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417601_3420580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421506_3422385_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010931070.1|3424333_3425284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425280_3425748_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425790_3426561_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426581_3427382_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427392_3428802_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428896_3429682_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429921_3430938_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431045_3431438_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431575_3432256_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432260_3433232_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433327_3434278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	3440433	3499733	4105889	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440433_3442197_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442308_3443187_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443299_3444115_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444118_3444370_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_077085667.1|3444454_3445471_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445801_3446023_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448383_3449301_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449798_3451007_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451086_3452658_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452775_3453711_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453899_3454844_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455411_3461129_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461134_3462262_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462317_3462944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463215_3464232_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464327_3465038_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465034_3466024_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466119_3467751_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467753_3468491_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468646_3469519_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469868_3471008_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471004_3471664_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471735_3472368_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472397_3472916_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472926_3474036_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474082_3474937_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474938_3475841_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477063_3478014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479770_3480760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480935_3481724_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481720_3482752_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482770_3483334_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483389_3484910_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485173_3485878_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485885_3486614_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486728_3487103_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487145_3488435_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488431_3489601_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489597_3490437_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490496_3491432_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491444_3492395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492493_3493456_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493487_3493847_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493971_3494874_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494875_3496648_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496682_3497459_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498782_3499733_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	3514671	3572744	4105889	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514671_3515622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515750_3516884_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516927_3517833_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517835_3519536_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519532_3520453_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520460_3521438_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521496_3522531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524505_3524742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524868_3525732_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525820_3526642_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526721_3527459_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527455_3528448_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3528600_3529224_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529268_3530417_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532740_3533691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534031_3534982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535080_3536031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536327_3536825_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536867_3538643_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538650_3539517_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539523_3540258_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541427_3542222_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542511_3543102_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543135_3544464_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544538_3545684_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545795_3546794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546756_3547191_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548707_3549592_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549588_3550794_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550790_3551651_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551763_3553554_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553594_3554239_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554260_3554569_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554734_3556021_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557454_3558405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560356_3561571_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561676_3562666_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562662_3563271_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563283_3563913_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563909_3564530_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564561_3565353_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566204_3566660_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566678_3567605_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567658_3568945_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569875_3570748_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570744_3571695_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571793_3572744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011177	Bordetella pertussis strain F034 chromosome, complete genome	4105889	4004956	4069869	4105889	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004956_4005442_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005530_4005668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005660_4006641_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006907_4007717_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007756_4008437_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008430_4008889_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008900_4009263_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009345_4010029_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010084_4010393_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010411_4010726_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010722_4013197_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013204_4014596_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014592_4014778_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014756_4015458_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015454_4016276_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016256_4017381_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017373_4018393_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018598_4019489_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019733_4020525_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020607_4020982_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020959_4022369_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022361_4023744_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024078_4025683_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025760_4026732_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026742_4027669_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028059_4029010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029179_4030406_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030605_4031472_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031464_4032427_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032527_4033478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033576_4034527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034626_4035577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035573_4037067_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037063_4040171_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040167_4043236_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043232_4044483_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044663_4045416_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045457_4046102_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046110_4047091_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047190_4047934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048016_4048364_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048461_4049304_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049348_4050236_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050262_4050451_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050548_4052006_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051992_4053519_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053537_4054005_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054004_4055027_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055147_4055888_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055942_4057043_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057044_4058235_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058354_4059371_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059689_4060361_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060357_4061266_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061477_4062125_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065985_4067053_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067063_4067873_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067962_4068736_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068918_4069869_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
