The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	27282	70036	4102201	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	77634	136108	4102201	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	164893	225405	4102201	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	233337	286925	4102201	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	390859	448368	4102201	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929765.1|390859_391810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391946_392864_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392860_393109_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393105_394311_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394383_395379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395401_396622_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396618_397263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398993_399803_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400107_401061_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401159_402143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402069_402771_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402819_403590_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403586_404765_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404932_406639_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406635_407532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407572_409162_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409211_410204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410272_410872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411332_412313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412388_413339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413427_414342_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414338_414998_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415087_416011_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416016_416472_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416468_417572_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417527_417800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417759_419379_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419375_420434_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420563_421058_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421150_422128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422323_423529_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423525_425037_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425052_426366_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426556_426736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427145_427880_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430324_431275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431406_431805_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432215_432686_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432774_433119_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433218_434619_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436407_436926_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437036_437792_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437987_439220_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439212_439998_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440064_441036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441046_442024_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442149_443322_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443348_444377_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444442_445636_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447417_448368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	590422	651612	4102201	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_010931070.1|590422_591373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591848_592739_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592735_593557_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624030_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639098_640451_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647294_648167_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	656936	703127	4102201	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691858_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	709293	763223	4102201	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853352.1|720316_721267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759474_761670_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761742_762150_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762272_763223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	885812	953788	4102201	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885812_886829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894463_896695_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902414_903365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903361_904081_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904201_906361_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906451_906721_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906809_907016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907014_907542_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907560_908340_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908507_909524_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909596_910088_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910098_911814_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912977_913928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913924_915757_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919035_920337_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922481_925370_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929335_930211_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930236_931292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|934675_935626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937606_937822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938379_939330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939326_939710_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939764_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945868_948481_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952837_953788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	997317	1069829	4102201	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|997317_998268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998372_999422_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999559_1000576_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002084_1002657_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002716_1003448_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003499_1004417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_077085656.1|1009850_1010099_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010244_1010859_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011045_1013106_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013235_1014087_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014083_1014710_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014706_1016461_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_077085657.1|1016753_1019459_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_077085658.1|1019471_1021133_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021145_1022936_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023157_1024333_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024375_1025326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025424_1026165_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026359_1028396_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028413_1029424_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029541_1030735_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030764_1031538_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031534_1032725_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032750_1033689_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033685_1036034_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036188_1036830_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038159_1038312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038343_1038892_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038910_1039396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039573_1040512_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040514_1040832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040877_1041822_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043502_1044153_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044206_1044542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044538_1045399_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045415_1045697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045770_1046034_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046277_1047228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047526_1048264_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048699_1049023_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049057_1049618_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049738_1050614_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050626_1051574_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051675_1051969_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051995_1054053_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054067_1054568_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054641_1056348_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057211_1058264_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058316_1058706_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058714_1059347_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059446_1060463_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061293_1062301_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062297_1063941_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063937_1064825_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064965_1065439_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065428_1066451_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066447_1067875_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068812_1069829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1073582	1134610	4102201	transposase,holin,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1073582_1074719_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074715_1075789_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075946_1077383_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077473_1078115_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1078450_1079467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079799_1082547_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082613_1084035_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084298_1085015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085099_1085417_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085457_1085871_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085872_1086232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086274_1087819_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087902_1088733_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088767_1089922_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089964_1090837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090953_1093242_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094448_1094913_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094939_1095890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096257_1097034_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097078_1097936_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097957_1098974_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099108_1100149_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100343_1102425_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102660_1104154_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104384_1105179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105399_1106758_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106754_1107597_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107615_1109502_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109443_1109695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109739_1110372_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110390_1110993_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111144_1112095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112675_1113383_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113741_1114728_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114867_1115881_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115877_1116828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116941_1117400_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117436_1118750_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118767_1119139_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119135_1120599_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120739_1121468_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121449_1124299_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124511_1125462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125629_1126454_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126453_1127332_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128236_1129352_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129380_1130175_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130171_1132037_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132115_1132748_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132744_1133047_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133089_1134610_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1152180	1217764	4102201	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1152180_1153977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153976_1154945_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155014_1155860_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155927_1156482_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156528_1157479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157577_1158210_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158374_1160657_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160811_1163508_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163633_1164122_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166532_1169403_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169448_1170663_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170892_1172320_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172417_1173509_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173521_1174280_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174367_1175270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175266_1176217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176346_1177330_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177384_1178107_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179585_1180941_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181021_1183397_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183561_1185637_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185698_1186493_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186600_1187563_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187550_1188306_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188413_1190051_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190118_1190856_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190958_1191534_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191706_1192243_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192275_1192590_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192605_1193451_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193489_1194869_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194946_1195828_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195926_1196877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196873_1197284_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197391_1198246_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198238_1199201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199246_1200371_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200476_1201355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201479_1202259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202412_1203834_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204268_1205966_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206192_1207134_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207460_1208207_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208214_1209141_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209262_1210180_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210219_1211173_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211197_1211776_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213449_1214058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214135_1214489_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214572_1215562_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215764_1216715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216813_1217764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1316900	1385387	4102201	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316900_1317851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318619_1319258_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320147_1320594_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320675_1321377_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321377_1322145_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322141_1323380_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323379_1324306_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324408_1325524_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325539_1326490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326843_1327425_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327421_1328255_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328465_1329779_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329955_1330837_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330856_1331708_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331760_1332849_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332959_1334087_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334321_1334933_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335031_1335982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336203_1336581_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336728_1337226_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337222_1337750_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337883_1338699_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338711_1339893_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339940_1340834_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340960_1341431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341556_1342384_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342412_1343189_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343185_1343461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343475_1343940_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343951_1344653_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344762_1345263_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345345_1346524_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348151_1348487_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348674_1350123_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350180_1350525_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350631_1351171_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351263_1352214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1352312_1352720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352952_1353384_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353565_1353970_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355206_1355530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355532_1356420_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356452_1356878_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356949_1357303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357542_1358049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358087_1359419_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359478_1360294_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360290_1361145_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364207_1366751_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368117_1369872_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369868_1371989_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371993_1374189_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374185_1377527_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380329_1381280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381345_1381525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381641_1382397_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382383_1383529_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010929588.1|1384436_1385387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1445878	1501365	4102201	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445878_1446829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448030_1448477_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448469_1449945_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449941_1450697_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450689_1451700_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451689_1453366_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453678_1454011_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454024_1454420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454429_1454756_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1454752_1455079_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1455005_1455419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456023_1456374_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456421_1456850_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456857_1458231_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458371_1458749_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459011_1460319_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460379_1461210_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461206_1461695_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461736_1463257_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463300_1463777_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464580_1467178_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467207_1468029_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468755_1469505_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469688_1470567_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470664_1471381_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471395_1471956_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472122_1472887_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472906_1473764_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473760_1474960_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1474999_1476334_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476386_1478723_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478848_1479412_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479420_1480512_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480583_1481039_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481039_1481834_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481830_1483012_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1482998_1483604_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483600_1484374_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484385_1485213_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485374_1487738_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487805_1488525_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488648_1489074_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489108_1490059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490176_1491103_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491168_1492326_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492306_1492774_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492921_1493872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493888_1494323_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494312_1494663_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494859_1496014_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496010_1497183_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497230_1498124_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498169_1498607_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498666_1499356_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1499365_1500316_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500414_1501365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1793935	1841950	4102201	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1793935_1794886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1794984_1797585_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1797691_1798696_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1798804_1800145_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1800185_1801214_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1801409_1801955_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1801951_1802512_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1802610_1803561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1803598_1804186_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1804203_1804587_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1805946_1807239_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1807373_1808414_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1808511_1809528_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1809795_1810431_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1810568_1811327_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1811311_1812091_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1812108_1812993_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1812989_1813769_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1813795_1814473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1814761_1815514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1815632_1817033_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1817056_1817455_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1817630_1817831_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1817969_1818698_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1818831_1820247_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1820250_1821114_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1821126_1821876_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1822118_1824074_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1824055_1824724_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1825498_1826449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1826547_1827498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827646_1827985_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828042_1828204_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828235_1828436_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828701_1831275_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1831345_1833895_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836445_1836934_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837025_1838177_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838230_1839052_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839090_1840320_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840448_1840889_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1840999_1841950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1903512	1962782	4102201	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1903512_1904463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904587_1905397_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1905597_1906548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1907821_1909039_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910095_1910998_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911074_1911947_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912077_1912446_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912503_1913550_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1913745_1915002_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1915006_1916344_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916493_1917450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917552_1918485_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918600_1918921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1918913_1919273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919320_1920895_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1920947_1921892_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1921909_1922740_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1922732_1924367_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1924363_1925719_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1926625_1928203_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1928206_1929481_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1929578_1929953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1931668_1932802_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1932839_1933445_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1933441_1934260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1934331_1936956_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1936942_1937197_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937263_1937845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938148_1938409_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938574_1939198_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939197_1939971_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939967_1941176_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941201_1941675_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1941748_1942699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1942797_1943748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1943846_1945196_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945961_1946717_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1946809_1949692_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1950014_1950440_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950467_1951616_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951612_1952119_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1952134_1953421_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1953470_1954766_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1954767_1955406_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1955411_1956569_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956595_1957951_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957954_1959025_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959163_1959400_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959487_1960594_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960559_1961864_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1961882_1962782_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	1973022	2017345	4102201	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1973022_1973973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974071_1975022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1975221_1976307_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1976322_1977084_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1977080_1978004_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1978102_1978627_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1978635_1979379_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1979474_1979714_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1979727_1979880_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979965_1981456_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1981547_1982486_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1982482_1982659_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1982661_1983324_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1984945_1985089_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1985085_1986060_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1986226_1987177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987173_1988448_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1988551_1989745_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1989741_1990395_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990391_1991828_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1991815_1992175_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1992989_1993130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1993147_1994098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995143_1997009_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997266_1998787_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998874_1999525_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000473_2001769_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001790_2002675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002773_2003649_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003638_2003995_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2004125_2005100_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005229_2005409_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005506_2006031_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006041_2006878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006990_2007362_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007358_2007910_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007925_2009617_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009665_2010346_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010593_2011058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011227_2012157_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012169_2012817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012890_2014708_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014791_2015742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2016394_2017345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2047118	2111487	4102201	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2047118_2048069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2048290_2049241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049339_2050305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050442_2051342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053936_2055424_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055434_2056631_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056703_2058023_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058019_2058895_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2058925_2060074_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060091_2060406_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060427_2061150_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061149_2061968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061972_2062500_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2062505_2063762_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064120_2065260_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065337_2066210_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067080_2068031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067990_2068626_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068985_2070308_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2070626_2071448_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2072872_2073445_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073484_2075314_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075276_2076335_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076372_2076834_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076918_2077665_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079155_2082386_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082452_2083784_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084036_2084411_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084513_2085692_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085702_2086293_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086403_2087210_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2087235_2088030_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089030_2090005_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090163_2090676_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090832_2091804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093548_2094355_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2094351_2095653_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095603_2096368_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096481_2097252_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2097336_2098524_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098596_2098971_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099071_2100334_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100330_2101188_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101360_2102362_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102813_2103764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2105327_2106479_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106847_2107084_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107147_2107315_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107428_2109324_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109487_2110438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110536_2111487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2297955	2359303	4102201	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297955_2298906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299022_2299742_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299914_2300901_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300901_2301384_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301387_2302671_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302667_2303606_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303602_2305312_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305321_2306569_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308179_2309469_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310606_2311380_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312041_2312785_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312859_2313600_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313795_2314632_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314682_2315453_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315502_2316555_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316551_2317178_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317174_2318209_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318387_2319404_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319502_2320453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323193_2324483_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324601_2325039_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325082_2326291_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326437_2326902_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326925_2327876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328860_2329634_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329630_2330629_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330713_2331490_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331645_2333250_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333630_2334755_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334881_2335505_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335501_2337403_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337451_2338246_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338258_2339260_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2339256_2339706_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2339755_2340604_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340701_2341244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341287_2342238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342393_2342720_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2342716_2342998_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342997_2343477_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343473_2345102_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345098_2345443_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345442_2348376_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349534_2350485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350583_2350880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350986_2351904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351908_2352622_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352635_2353607_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2355356_2355707_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355710_2356898_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357336_2358059_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358352_2359303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2380094	2451248	4102201	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2380094_2381045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381597_2383223_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383272_2384307_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384309_2385656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385652_2387167_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387157_2388168_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388641_2389583_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389591_2390560_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392099_2393068_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393245_2394235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394281_2395040_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395229_2395967_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396065_2397016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397200_2397983_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397976_2398678_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398917_2399520_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2400846_2401797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401793_2403350_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403342_2404116_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404174_2405125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405206_2406382_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406395_2408453_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408449_2409475_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409486_2410776_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410798_2411896_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411892_2412783_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412779_2414864_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414895_2416065_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416106_2416847_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416846_2417617_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2418472_2419258_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419284_2421369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421536_2423492_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423815_2424316_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424414_2425941_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426078_2426966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426980_2427934_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427985_2430076_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430091_2430478_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433171_2433975_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435268_2436171_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436235_2437012_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437333_2438383_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438506_2440177_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440181_2440976_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441074_2442025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442044_2442950_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443027_2443726_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443885_2444830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2444839_2446327_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446326_2447394_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447457_2448870_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449055_2450276_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450297_2451248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2535448	2597749	4102201	transposase,tRNA	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2535448_2536399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536497_2537268_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537264_2537936_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537932_2538574_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538586_2539507_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539667_2540828_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540869_2541820_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542418_2542643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542807_2544502_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544623_2544893_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545008_2545407_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545417_2546374_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546510_2547056_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547076_2549026_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549413_2550190_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550195_2550588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551009_2551960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551956_2553054_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553085_2554036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555817_2557059_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557070_2557844_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557870_2558821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558919_2559702_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559790_2561017_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561742_2563128_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563146_2563752_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563748_2565605_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565601_2566402_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566416_2567610_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567677_2568652_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568774_2569998_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570108_2572313_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572607_2573267_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573274_2573481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573819_2574575_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2574845_2575361_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575633_2575951_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2576138_2576375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576665_2578021_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578067_2579408_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579509_2580142_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2580141_2582511_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582543_2583503_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583489_2584176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584172_2584505_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2584620_2585571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2585567_2587634_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2587633_2587906_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2588600_2588690_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2588689_2590474_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2590497_2592663_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2592673_2593273_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596094_2596790_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2596798_2597749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2683866	2724535	4102201	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2683866_2684817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684927_2685110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685209_2685806_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685989_2687081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687580_2687991_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2688049_2688379_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2688396_2690814_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690826_2691849_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691923_2692283_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692298_2692496_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692831_2693782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693976_2694426_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694422_2695373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695483_2696932_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2697046_2697292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697431_2698382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698626_2699340_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699462_2699690_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699984_2700623_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2700731_2701766_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701762_2702713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703128_2703653_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703656_2703926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704124_2705186_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705269_2706904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706905_2707709_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707737_2708697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708700_2710215_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710251_2711256_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711687_2712158_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712193_2712805_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712835_2713459_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713539_2715072_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2715106_2716324_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716391_2717423_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717419_2718589_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718582_2719263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719424_2720267_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720429_2721401_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721572_2722451_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722473_2723544_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723584_2724535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2780000	2852871	4102201	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2780000_2780417_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780527_2781160_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781188_2781632_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781653_2782745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782799_2783600_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783735_2784356_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784495_2784969_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786108_2787059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787055_2794717_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794957_2799004_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799316_2799898_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799894_2801193_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801272_2802301_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802561_2803512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803508_2804459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804775_2805381_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2805434_2806748_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806822_2807293_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807292_2808081_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808091_2809744_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809831_2810782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811943_2812450_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812446_2813211_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813226_2813511_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813575_2814565_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814736_2815666_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815637_2816324_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816357_2816903_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816947_2818213_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818209_2819112_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820293_2821238_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821332_2822850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822891_2824520_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824627_2825509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828621_2828996_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829020_2829359_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829402_2831037_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831075_2832422_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2832529_2833951_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834020_2834605_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834707_2835658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835793_2836900_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836910_2838008_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838152_2839358_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839364_2839886_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2839882_2840365_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840370_2840622_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840602_2841088_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841223_2844685_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844702_2845587_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845596_2846028_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846274_2846778_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2846855_2848256_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848330_2849206_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849202_2850210_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850677_2850983_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851073_2851664_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851854_2852871_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2856014	2922826	4102201	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856014_2856965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857063_2858014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858010_2858805_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858836_2859541_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859615_2860416_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860412_2860820_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860816_2861458_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861450_2863451_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864711_2866043_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866039_2866990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868696_2868963_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869670_2870009_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874563_2875166_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875262_2876552_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876609_2877341_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877337_2878141_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878137_2879226_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879222_2880152_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880300_2881446_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881467_2882418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882748_2886570_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886726_2887395_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887399_2889073_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889091_2890411_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2890415_2892731_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2892786_2894955_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2894951_2900132_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900230_2900545_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900772_2901018_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901112_2901631_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901730_2902936_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903051_2904449_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904565_2905144_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905216_2906608_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906775_2907726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908006_2908627_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908623_2909037_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909033_2910077_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910132_2910321_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910330_2911095_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911185_2911842_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911933_2912692_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912717_2914319_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914519_2915524_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915624_2915888_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916005_2916782_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917372_2918323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920706_2921819_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921875_2922826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	2953212	2996903	4102201	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2953212_2954163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2954283_2955180_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957457_2959683_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959847_2960936_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960892_2961546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961593_2962391_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962922_2963873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963953_2965102_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965158_2966109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2966207_2966513_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966541_2966976_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966977_2968222_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968218_2968929_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968943_2969855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970217_2970622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970618_2971077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971083_2971992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971988_2972855_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972841_2973669_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973679_2974807_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975884_2977123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977164_2978427_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978433_2979186_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979237_2979423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979698_2980163_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980194_2980854_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980998_2983107_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983103_2984054_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984157_2984778_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984881_2985622_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986756_2987881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987926_2988295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988536_2989487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990522_2991065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991450_2992401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2992397_2993306_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2993432_2994269_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994781_2995891_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995952_2996903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	3377898	3431639	4102201	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3377898_3378849_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379253_3379898_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379922_3380507_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380607_3381225_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381227_3382943_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382939_3383248_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383264_3383882_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383926_3384229_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384329_3385184_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385371_3385596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385765_3386038_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386455_3386863_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387232_3388027_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388127_3389363_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389431_3390448_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390459_3391836_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391832_3393029_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393025_3394564_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394560_3395820_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397760_3398711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399477_3400572_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400564_3401899_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401852_3402536_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402561_3403725_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403721_3404723_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404722_3405595_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405591_3406341_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406337_3407129_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407125_3408265_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408540_3409326_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409359_3410142_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410145_3410535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411674_3412538_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412573_3413662_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413658_3414609_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414962_3417941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418867_3419746_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421694_3422645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422641_3423109_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423151_3423922_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423942_3424743_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424753_3426163_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426257_3427043_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427282_3428299_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428406_3428799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428936_3429617_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429621_3430593_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430688_3431639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	3437794	3497095	4102201	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437794_3439558_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439669_3440548_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440660_3441476_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441479_3441731_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3441815_3442832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443162_3443384_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445744_3446662_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447159_3448368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448447_3450019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450136_3451072_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451260_3452205_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452772_3458490_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458495_3459623_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459678_3460305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460576_3461593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461688_3462399_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462395_3463385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463480_3465112_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465114_3465852_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466007_3466880_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467229_3468369_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468365_3469025_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469096_3469729_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469758_3470277_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470287_3471397_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471443_3472298_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472299_3473202_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474424_3475375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477132_3478122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478297_3479086_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479082_3480114_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480132_3480696_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480751_3482272_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482535_3483240_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483247_3483976_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484090_3484465_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484507_3485797_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485793_3486963_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486959_3487799_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487858_3488794_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488806_3489757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489855_3490818_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490849_3491209_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491333_3492236_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492237_3494010_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494044_3494821_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3496144_3497095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	3512033	3570106	4102201	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512033_3512984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513112_3514246_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514289_3515195_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515197_3516898_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516894_3517815_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517822_3518800_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518858_3519893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521867_3522104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522230_3523094_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523182_3524004_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524083_3524821_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524817_3525810_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525962_3526586_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526630_3527779_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530102_3531053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531393_3532344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532442_3533393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533689_3534187_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534229_3536005_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536012_3536879_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536885_3537620_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538789_3539584_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539873_3540464_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540497_3541826_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541900_3543046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543157_3544156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544118_3544553_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546069_3546954_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546950_3548156_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548152_3549013_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549125_3550916_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550956_3551601_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551622_3551931_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552096_3553383_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554816_3555767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557718_3558933_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559038_3560028_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560024_3560633_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560645_3561275_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561271_3561892_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561923_3562715_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563566_3564022_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564040_3564967_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565020_3566307_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567237_3568110_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568106_3569057_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569155_3570106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011176	Bordetella pertussis strain F011 chromosome, complete genome	4102201	4001269	4066181	4102201	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4001269_4001755_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001843_4001981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001973_4002954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003220_4004030_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004069_4004750_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004743_4005202_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005213_4005576_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005658_4006342_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006397_4006706_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006724_4007039_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007035_4009510_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009517_4010909_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010905_4011091_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011069_4011771_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011767_4012589_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012569_4013694_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013686_4014706_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4014911_4015802_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016046_4016838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016920_4017295_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017272_4018682_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018674_4020057_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020391_4021996_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4022073_4023045_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023055_4023982_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024372_4025323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025492_4026719_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026918_4027785_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027777_4028740_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028840_4029791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029889_4030840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030938_4031889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031885_4033379_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033375_4036483_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036479_4039548_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039544_4040795_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4040975_4041728_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4041769_4042414_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4042422_4043403_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043502_4044246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044328_4044676_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044773_4045616_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045660_4046548_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046574_4046763_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046860_4048318_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048304_4049831_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049849_4050317_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050316_4051339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051459_4052200_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052254_4053355_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053356_4054547_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054666_4055683_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056001_4056673_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056669_4057578_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057789_4058437_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4062297_4063365_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063375_4064185_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064274_4065048_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065230_4066181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
