The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	0	60546	4116415	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|59595_60546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	71183	124170	4116415	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|71183_72134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|72227_72542_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|73734_75642_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|75803_76424_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|76455_77037_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|77125_77377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|77378_78221_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|78326_79736_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|79732_80683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|80757_81702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|81698_83573_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|84920_85625_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|85621_86794_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|86989_87583_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|87579_88812_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|88829_90089_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|90112_91201_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|91208_92309_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|92312_92888_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|92891_93944_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|94074_95082_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|95083_96370_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|96386_96542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|96566_97370_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|97366_98233_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|98307_99438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|99437_100277_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|101209_101812_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|101841_102495_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|102627_103884_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|103931_104831_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|104906_105182_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|105189_105852_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|105913_106915_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|106929_107478_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|107535_108432_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|108428_109490_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|109525_110476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|111375_112569_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|112650_113280_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|113341_114025_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|114034_115717_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|116004_116352_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|116442_116760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|117042_118059_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|118133_118934_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|118930_119806_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|119816_121109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|121151_122192_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|122297_123119_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|123219_124170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	166986	306128	4116415	transposase,protease,tRNA	Klosneuvirus(10.53%)	117	NA	NA
WP_005015810.1|166986_167937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169380_170283_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170260_170890_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|171172_172603_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172636_173266_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173314_174922_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174946_175630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175711_176188_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|176394_177345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178460_178988_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179079_179895_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179955_180690_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180727_182806_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183055_183328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183429_184515_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184518_186423_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_024000654.1|186419_190058_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190118_190682_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190689_191112_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|191139_191559_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|191587_192061_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|192160_192658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192812_195083_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|195131_196364_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|197516_198152_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198148_199042_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199436_200537_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200618_200993_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201052_203917_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204061_204802_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204871_206083_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206111_207080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|207693_208644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|208800_209124_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|209228_210269_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|210274_211054_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|211099_211396_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|211421_211697_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|211753_212398_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|212397_213084_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|213213_214065_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|214115_214841_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|214872_216222_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|216333_217266_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|217723_220519_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|221112_224055_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|224126_224846_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224884_225433_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225587_226487_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226511_227462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227680_228376_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228392_229805_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229917_231348_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231389_233303_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233621_234188_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234278_235280_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235394_236345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236431_237382_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237378_238329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238427_239225_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240174_240585_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|241606_242350_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242393_243437_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243607_245710_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247120_248077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248095_248587_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248583_249939_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249939_250638_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250634_251336_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251588_252638_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252743_253685_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_023997118.1|253681_255571_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	33.1	1.3e-78
WP_003814332.1|255657_256296_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|256438_257824_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257754_258291_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258442_259834_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259850_260831_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|260966_261950_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262014_262914_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263020_264775_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264782_265907_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265920_266901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267631_268582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269141_269687_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269770_271390_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271405_272560_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272573_272699_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272695_274447_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274443_276123_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276185_276734_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277876_278155_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279198_280149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|280426_280588_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280595_280736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281254_281704_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281713_282325_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|282483_283338_-	cytochrome c1	NA	NA	NA	NA	NA
WP_005013747.1|283487_284438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815815.1|285853_286495_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|286634_287093_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|287117_287894_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|287947_289084_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|289080_290031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|290129_290756_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|290778_291705_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|291713_293300_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|293296_294301_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|294500_295361_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|295392_296394_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_055311665.1|296464_297274_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|297351_299211_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|299339_300542_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|300655_301537_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|303039_303600_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|303659_304610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|304801_305089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|305177_306128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	393965	451474	4116415	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|393965_394916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|395052_395970_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|395966_396215_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|396211_397417_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|397489_398485_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|398507_399728_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|399724_400369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929483.1|402099_402909_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|403213_404167_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|404265_405249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|405175_405877_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|405925_406696_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|406692_407871_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|408038_409745_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|409741_410638_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|410678_412268_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|412317_413310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|413378_413978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|414438_415419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|415494_416445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|416533_417448_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|417444_418104_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|418193_419117_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|419122_419578_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|419574_420678_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|420636_420906_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|420865_422485_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|422481_423540_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|423669_424164_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|424256_425234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|425429_426635_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|426631_428143_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|428158_429472_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|429662_429842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|430251_430986_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|433430_434381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|434512_434911_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|435321_435792_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|435880_436225_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|436324_437725_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|439513_440032_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|440142_440898_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|441093_442326_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|442318_443104_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|443170_444142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|444152_445130_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|445255_446428_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|446454_447483_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|447548_448742_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|450523_451474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	592479	653668	4116415	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|592479_593430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|593926_594796_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594792_595614_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595811_596303_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|596321_597395_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|597441_598545_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598620_599241_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|599261_599771_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599825_600077_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|600140_601274_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|601281_601668_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|601664_604184_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604612_604951_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604947_605454_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605515_606316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|606426_607368_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607461_608997_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610676_612527_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612530_613364_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|613363_614305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|614556_615528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615669_617958_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|618264_619173_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|619227_620193_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|620267_621929_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|622000_622711_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|622859_623810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624508_624892_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624949_625552_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625569_625971_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|626104_626998_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|626994_627576_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|628370_629105_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|629145_630195_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|630342_630921_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|631307_632285_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|632378_636773_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|636973_637822_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|637980_638793_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638848_639799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|639897_640698_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640759_641143_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|641154_642588_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|642794_643124_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|643126_643876_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|644058_644979_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|645025_645238_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|645260_645683_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|645699_646800_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646896_648414_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648489_649329_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|649350_650232_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|650313_651408_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651701_652652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652726_653668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	658992	706232	4116415	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|658992_660018_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660058_660298_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660367_661957_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661956_662505_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662585_663158_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663176_664088_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664161_665130_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665252_666326_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666330_668151_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|668227_669178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669266_669602_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669735_670386_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670407_671826_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671895_672651_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672619_673378_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673388_674270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674286_674994_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|674996_675755_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|675964_677707_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677699_678224_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_050818153.1|678263_679058_-	dioxygenase	NA	NA	NA	NA	NA
WP_019248926.1|679225_680299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680397_681348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681599_681806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681877_682489_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683043_683295_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|683287_683977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684233_685184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033469562.1|685823_686309_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|686295_687573_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687575_688994_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689022_690078_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690083_690326_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690448_691051_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|692528_693479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|694153_694405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|694467_694950_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|694951_695152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|695151_695547_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|695543_695942_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|695938_696361_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|696368_696869_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|697123_697642_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|697651_697981_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|697998_698289_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|698314_700927_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|700936_701296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|701363_701897_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|701893_702283_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|702275_706232_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	712398	767377	4116415	transposase,tRNA	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|712398_714129_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|714181_714610_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|714612_715293_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|715292_715751_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|715787_716762_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|716778_718095_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|718126_718624_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|718710_719400_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|719399_720449_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|720445_721240_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|721408_721759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|721734_722292_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929584.1|723421_724372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|726509_727739_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|727741_729184_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|729288_730434_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|730465_731263_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|731287_732847_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|732843_735216_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|735325_736429_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|736428_737121_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|737264_737966_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|737950_738328_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|739059_740010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|740169_741042_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|741382_741601_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|741640_743020_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|743061_744459_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|744498_746151_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|746154_747039_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|747038_747980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|748058_749678_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|749844_750660_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|750727_751297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|751297_752248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|752902_754000_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|754033_755299_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|755456_756407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|756650_757241_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|757256_759701_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|759820_760792_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|760923_761448_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|761407_762358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|762579_764775_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|764847_765276_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|765377_766328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|766426_767377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	818970	890983	4116415	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_014486111.1|818970_819921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|820019_820676_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|820823_823532_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|823541_824561_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930048.1|824557_825508_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|825606_826095_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|826091_826775_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|826804_830260_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|830295_831156_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|831284_832202_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|832339_833320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|833379_835170_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|835166_835943_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|835952_836471_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|836583_838854_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|839065_841297_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|841597_841927_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_003813916.1|841943_843428_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|843438_844941_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|844937_846950_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|846967_847276_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|847272_847920_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|847937_848426_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|848447_849521_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|849520_851848_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|851863_853231_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|853227_853722_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_024000900.1|853767_855024_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|855026_855650_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|855724_856201_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|856237_856597_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|856785_857943_-	porin	NA	NA	NA	NA	NA
WP_005012067.1|858255_859206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|859223_859778_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|859779_860214_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|860210_860645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|860628_861432_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|861448_862264_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_020699608.1|862260_863076_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|863222_863924_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|863951_865910_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|865992_866943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|867163_867832_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|867955_869062_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|869074_872188_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|872184_873678_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|873692_874364_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|874407_874902_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|875042_875690_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|875793_877842_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|877838_879851_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|879876_881211_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|881319_882312_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|882378_884463_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|884487_885459_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|885587_886619_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|886622_887774_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|887944_888868_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|888945_889770_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931561.1|889966_890983_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	898617	961705	4116415	transposase,holin	Bacillus_phage(25.0%)	53	NA	NA
WP_010930018.1|898617_900849_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|901636_902083_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|902104_902851_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|902994_903972_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|904605_905217_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|905210_906428_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|906568_907519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|907515_908235_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|908355_910515_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|910605_910875_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|911168_911696_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|911714_912494_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|912661_913678_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|913750_914242_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|914252_915968_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|917131_918082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|918078_919911_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|920309_920969_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|921062_921209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|921317_921485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|921496_922177_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|922458_923175_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|923189_924491_-	phospholipase A	NA	NA	NA	NA	NA
WP_010930057.1|929755_931108_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|931136_931658_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|931654_933109_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|933143_933392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|933497_934373_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|934398_935454_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|935466_936258_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|936290_937661_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|938837_939788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|939840_940062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|940221_940434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|940553_941672_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|942177_942429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|942540_943491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|943487_943871_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|943925_945740_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|945889_946717_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|946762_947743_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|947739_947952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|947948_949130_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_010930070.1|949293_950028_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
WP_010930071.1|950029_952642_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|952777_954691_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|955306_955717_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|955814_956900_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|956998_957949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|957945_958920_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|959044_959956_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|960232_960625_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|960754_961705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	981127	1043288	4116415	transposase	Streptococcus_phage(20.0%)	46	NA	NA
WP_010929591.1|981127_982078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|982158_983070_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|983130_984276_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|984295_985210_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|985281_986031_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|986030_986960_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|987203_989030_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|989112_989754_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|989976_990978_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|992820_993885_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|994682_995591_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|997078_998353_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|998506_998887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|998894_999767_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1000072_1000453_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1000663_1001389_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005015810.1|1001586_1002537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1002539_1003589_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1003726_1004743_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1006251_1006824_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1006883_1007615_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1007666_1008584_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1009391_1012571_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1012567_1013950_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1014019_1014271_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1014416_1015031_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1015217_1017332_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1017407_1018259_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1018255_1018882_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1018878_1020633_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1020925_1023631_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1023643_1025305_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1025317_1027108_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1027329_1028505_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1028547_1029498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1029596_1030547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1030645_1031386_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1031580_1033617_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1033634_1034645_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1034762_1035956_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1035985_1036759_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1036755_1037946_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1037971_1038910_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1038906_1041255_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1041409_1042051_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1042154_1043288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	1051498	1102145	4116415	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	43	NA	NA
WP_005012067.1|1051498_1052449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1052747_1053485_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1053920_1054244_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1054278_1054839_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1054959_1055835_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1055847_1056795_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1056896_1057190_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1057216_1059274_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1059288_1059789_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1059862_1061569_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1062432_1063485_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1063537_1063927_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1063935_1064568_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1064667_1065684_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1066472_1067522_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1067518_1069162_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1069158_1070046_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1070186_1070660_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1070649_1071672_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1071668_1073096_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_062826590.1|1074033_1075050_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1075382_1076318_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1076367_1078248_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1078314_1078659_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1078803_1079940_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1079936_1081010_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1081167_1082604_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1082694_1083336_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_062826652.1|1083671_1084688_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1085020_1087753_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1087819_1089241_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1089504_1090221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1090305_1090623_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1090663_1091077_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1091078_1091438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1091480_1093025_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1093108_1093939_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1093973_1095128_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1095170_1096043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1096159_1098448_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1099654_1100119_+	barstar family protein	NA	NA	NA	NA	NA
WP_010931070.1|1100145_1101096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1101194_1102145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	1113870	1190331	4116415	protease,tRNA,transposase	Catovirus(22.22%)	53	NA	NA
WP_010930174.1|1113870_1115757_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1115698_1115950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1115994_1116627_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1116645_1117248_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_076879620.1|1117399_1118350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1118930_1119638_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1119996_1120983_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1121122_1122136_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812703.1|1123195_1123654_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1123690_1125004_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1125021_1125393_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1125389_1126853_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1126993_1127722_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1127703_1130553_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1130765_1131716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1131883_1132708_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1132707_1133586_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1134490_1135606_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1135634_1136429_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1136425_1138291_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1138369_1139002_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930190.1|1139329_1140850_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1140856_1141612_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1141641_1142746_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1142848_1144549_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1144530_1145508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1145517_1146798_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1146790_1147486_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1147519_1148347_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1148628_1151859_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1152594_1156521_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1159353_1160217_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1160216_1161185_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1161254_1162100_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1162167_1162722_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1162768_1163719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1163817_1164441_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1164617_1166900_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1167054_1169751_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1169876_1170365_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1172549_1173500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813631.1|1173824_1176695_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1176740_1177955_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1178184_1179612_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1179709_1180801_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1180813_1181572_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1181659_1182562_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930048.1|1182558_1183509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1183607_1184558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1184656_1185607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1185736_1186720_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1186774_1187497_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1188975_1190331_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 13
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	1305404	1373891	4116415	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1305404_1306355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1307123_1307762_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1308651_1309098_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1309179_1309881_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1309881_1310649_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1310645_1311884_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1311883_1312810_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1312912_1314028_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1314043_1314994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1315347_1315929_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1315925_1316759_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1316969_1318283_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1318459_1319341_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1319360_1320212_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1320264_1321353_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1321463_1322591_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1322825_1323437_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1323535_1324486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1324707_1325085_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1325232_1325730_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1325726_1326254_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1326387_1327203_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1327215_1328397_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1328444_1329338_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1329464_1329935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1330060_1330888_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1330916_1331693_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1331689_1331965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1331979_1332444_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1332455_1333157_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1333266_1333767_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1333849_1335028_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1336655_1336991_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1337178_1338627_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1338684_1339029_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1339135_1339675_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1339767_1340718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1340816_1341224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1341456_1341888_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1342069_1342474_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1343710_1344034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1344036_1344924_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1344956_1345382_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1345453_1345807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1346046_1346553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1346591_1347923_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1347982_1348798_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1348794_1349649_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1352711_1355255_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1356621_1358376_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1358372_1360493_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1360497_1362693_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1362689_1366031_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010929588.1|1368833_1369784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1369849_1370029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1370145_1370901_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1370887_1372033_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1372940_1373891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	1463505	1502095	4116415	protease,transposase	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1463505_1464840_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1464892_1467229_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1467354_1467918_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1467926_1469018_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1469089_1469545_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1469545_1470340_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1470336_1471518_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1471504_1472110_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1472106_1472880_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1472891_1473719_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1473880_1476244_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1476311_1477031_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1477154_1477580_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1477614_1478565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1478682_1479609_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1479674_1480832_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1480812_1481280_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_014905945.1|1481427_1482378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1482394_1482829_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1482818_1483169_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1483365_1484520_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1484516_1485689_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1485736_1486630_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1486675_1487113_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1487172_1487862_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1487871_1488822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1488920_1489883_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1490109_1491264_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_050818152.1|1491274_1494517_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1495538_1496183_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1496193_1497093_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1497140_1498226_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1498222_1499917_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1500095_1501046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1501144_1502095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2028972	2098609	4116415	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2028972_2031630_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2031707_2032910_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2032906_2033419_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2033541_2033979_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2034255_2035206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|2035459_2037265_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2037378_2037546_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2037609_2037846_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2038214_2039414_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2040929_2041880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2042331_2043333_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2043505_2044363_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2044359_2045622_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2045722_2046097_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2046169_2047357_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2047441_2048212_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2048325_2049090_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2049040_2050342_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2050338_2051145_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2052889_2053861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2054017_2054530_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2054688_2055663_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2056663_2057458_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2057483_2058290_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2058400_2058991_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2059001_2060180_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2060282_2060657_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019247652.1|2060909_2062226_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2062292_2065523_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2067013_2067760_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2067844_2068306_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2068343_2069402_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2069364_2071194_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2071233_2071806_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2073230_2074052_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2074370_2075693_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2076052_2076688_+	membrane protein	NA	NA	NA	NA	NA
WP_076879629.1|2076647_2077598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2078468_2079341_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2079418_2080558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2080916_2082173_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2082178_2082706_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2082710_2083529_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2083528_2084251_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2084272_2084587_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2084604_2085753_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2085783_2086659_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2086655_2087975_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2088047_2089244_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2089254_2090742_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2093336_2094236_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2094373_2095339_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2095437_2096388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2096486_2097437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2097658_2098609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2110105	2159500	4116415	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2110105_2111056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2112193_2112490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2112664_2114017_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_005013747.1|2114115_2115066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930153.1|2115208_2116225_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2118204_2119218_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2119304_2120210_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2120366_2120711_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2120868_2121327_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2121340_2123557_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2123553_2124615_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2124643_2125618_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2125569_2126388_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2126400_2127009_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2127183_2127579_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2127597_2129037_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2129065_2129413_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2129431_2130382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2131034_2131985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2132068_2133886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2133959_2134607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2134619_2135549_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2135718_2136183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2136430_2137111_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2137159_2138851_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2138866_2139418_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2139414_2139786_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2139898_2140735_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2140745_2141270_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2141367_2141547_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2141676_2142651_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2142781_2143138_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2143127_2144003_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2144101_2144986_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2145007_2146303_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2147251_2147902_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2147989_2149510_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2149767_2151633_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_154585107.1|2152643_2152805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2153551_2153911_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2153898_2155335_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2155331_2155985_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2155981_2157175_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2157278_2158553_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2158549_2159500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2170704	2239080	4116415	transposase,protease,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2170704_2171655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2171614_2172028_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2172312_2172612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2173021_2175304_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2175769_2175964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2175989_2178020_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2178039_2178252_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2178529_2179069_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2179182_2180478_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2180554_2181712_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2181895_2182795_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2182813_2184118_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2184083_2185190_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2185277_2185514_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2185652_2186723_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2186726_2188082_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2188108_2189269_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2189271_2189910_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2189911_2191198_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2191256_2192552_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2192558_2193065_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2193061_2194210_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2194237_2194663_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2194985_2197868_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2197960_2198716_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2199481_2200831_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930048.1|2200929_2201880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2201953_2202427_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2202452_2203661_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2203657_2204431_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2204430_2205054_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2205219_2205480_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2205783_2206365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2206431_2206686_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2206672_2209297_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2209368_2210187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2210183_2210789_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2210826_2211960_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2213675_2214050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2214147_2215422_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2215425_2217003_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2217909_2219265_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2219261_2220896_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2220888_2221719_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2221736_2222681_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2222733_2224308_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2224355_2224715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2224707_2225028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2225143_2226076_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_050818134.1|2226178_2227135_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2227284_2228622_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2228626_2229883_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2230078_2231125_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2231182_2231551_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2231681_2232554_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2232630_2233533_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2234589_2235807_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2237080_2238031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2238129_2239080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2254358	2319179	4116415	transposase,protease,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2254358_2255309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2255879_2256092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2256109_2256841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2256875_2257517_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2257509_2258178_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2260390_2261167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2261188_2262346_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2262342_2262774_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_077070124.1|2262770_2263574_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2263587_2263989_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2264055_2265027_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2265092_2266316_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2266543_2267494_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2267617_2270071_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2270259_2271564_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2271668_2272322_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2272324_2273635_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2273831_2274392_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2274503_2274704_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2275049_2275616_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2275699_2275903_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2276209_2276530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2276571_2276853_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2276927_2278184_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2278566_2278896_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2280466_2281288_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2281287_2282427_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2282433_2283330_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2283326_2285252_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2285611_2288224_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2288276_2290577_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2290573_2291782_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2292043_2292418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930179.1|2292414_2293365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2293463_2295458_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2295517_2296483_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2296472_2299334_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2299336_2299843_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2299947_2301156_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2301157_2302096_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2302257_2302731_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2302727_2303678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2303788_2304229_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2304357_2305587_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2305625_2306447_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2306500_2307652_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2307743_2308232_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2310782_2313332_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2313402_2315976_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2316241_2316442_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2316473_2316635_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2316692_2317031_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2317179_2318130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2318228_2319179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2335149	2395235	4116415	transposase,tRNA	Moraxella_phage(25.0%)	52	NA	NA
WP_010929632.1|2335149_2336166_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2336263_2337304_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2337438_2338731_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2340090_2340474_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2340491_2341079_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2341116_2342067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2343051_2343825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2343821_2344820_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2344904_2345681_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2345836_2347441_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2347821_2348946_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2349072_2349696_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2349692_2351594_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2351642_2352437_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2352449_2353451_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2353447_2353954_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2353946_2354795_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2354892_2355435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2355478_2356429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2356584_2356911_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2356907_2357192_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2357188_2357668_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2357664_2359293_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2359289_2359634_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2359633_2362567_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2363725_2364676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2364774_2365071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2365177_2366095_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2366099_2366813_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2366826_2367798_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2369517_2369898_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_170954298.1|2371511_2372249_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2372542_2373493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2373489_2373918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2375319_2376282_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2376397_2377351_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2377360_2378353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2378404_2379160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2379224_2379914_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2380135_2381086_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2381116_2382313_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2382303_2383083_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2383195_2384122_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2384207_2385152_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2385129_2385999_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2386242_2386866_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|2387180_2387480_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2387493_2390568_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2390697_2391372_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2391364_2393179_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2393232_2394180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2394284_2395235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2455264	2521593	4116415	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|2455264_2456215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2456234_2457140_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2457217_2457916_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2458075_2459020_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2459029_2460517_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2460516_2461584_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2461647_2463060_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2463245_2464466_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2464487_2465438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2465536_2466178_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2466304_2468107_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2469758_2470664_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2470845_2472222_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2472388_2473129_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2473265_2474192_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2474464_2474620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2474757_2475042_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2475100_2476591_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2476835_2477435_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2477439_2478210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2478447_2479161_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2479157_2480075_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2480210_2480843_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2480884_2481088_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2481112_2483392_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2483404_2484133_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2484129_2484789_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2484857_2485610_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2485791_2486742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2487634_2488540_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|2488551_2489679_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2489767_2490382_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2491040_2492228_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|2492224_2494822_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2495076_2495292_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2495747_2496302_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2496569_2497130_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2497241_2498546_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2498542_2500054_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_024000672.1|2500159_2501161_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2501150_2502263_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2502361_2503312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2503308_2503935_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2503994_2504846_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|2504949_2505549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2505545_2506310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2506379_2507330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2507428_2508037_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2508087_2508414_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2508460_2510686_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2511353_2514758_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2514770_2517431_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_004568212.1|2517452_2517599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2517634_2518837_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2519523_2520636_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2520642_2521593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2549623	2611924	4116415	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2549623_2550574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2550672_2551443_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2551439_2552111_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2552107_2552749_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2552761_2553682_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2553842_2555003_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2555044_2555995_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2556659_2556860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2556982_2558677_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2558798_2559068_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2559183_2559582_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2559592_2560549_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2560685_2561231_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2561251_2563201_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2563588_2564365_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2564370_2564763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2565184_2566135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2566131_2567229_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2567260_2568211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2569992_2571234_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2571245_2572019_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2572045_2572996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2573094_2573877_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2573965_2575192_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2575917_2577303_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2577321_2577927_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2577923_2579780_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2579776_2580577_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2580591_2581785_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2581852_2582827_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2582949_2584173_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2584283_2586488_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2586782_2587442_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2587449_2587656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2587994_2588750_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2588765_2588927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2589020_2589536_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2589808_2590126_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2590070_2590715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2590840_2592196_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2592242_2593583_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2593684_2594317_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2594316_2596677_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2596718_2597678_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2597664_2598351_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2598347_2598680_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2598795_2599746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2599742_2601809_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2601808_2602081_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2602775_2602865_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2602864_2604649_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2604672_2606838_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2606848_2607448_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2610269_2610965_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2610973_2611924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2698041	2738710	4116415	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005012067.1|2698041_2698992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2699102_2699285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2699384_2699981_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2700164_2701256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2701755_2702166_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2702224_2702566_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2702571_2704989_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2705001_2706024_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2706098_2706458_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2706473_2706671_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2707006_2707957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2708151_2708601_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2708597_2709548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|2709651_2709933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2710047_2711496_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931070.1|2711606_2712557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2712801_2713515_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2713637_2713865_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2714159_2714798_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2714906_2715941_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2715937_2716888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2717303_2717828_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2717831_2718101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2718299_2719361_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2719444_2721079_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2721080_2721884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2721912_2722872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2722875_2724390_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2724426_2725431_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2725862_2726333_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2726368_2726980_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2727010_2727634_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2727714_2729247_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2729281_2730523_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2730566_2731598_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2731594_2732764_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2732757_2733438_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2733599_2734442_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2734604_2735576_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2735747_2736626_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2736648_2737719_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2737759_2738710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2793125	2866004	4116415	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2793125_2793542_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2793652_2794285_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2794313_2794757_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2794778_2795870_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2795924_2796725_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2796860_2797481_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2797620_2798094_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2799233_2800184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2800180_2807842_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2808082_2812129_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2812441_2813023_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2813019_2814318_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2814397_2815426_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2815686_2816637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2816633_2817584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2817900_2818506_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2818559_2819873_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2819947_2820418_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2820417_2821206_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2821216_2822869_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2822956_2823907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2825068_2825575_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2825571_2826336_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2826351_2826636_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2826700_2827690_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2827861_2828791_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2828762_2829449_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2829482_2830028_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2830072_2831338_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2831334_2832237_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2833418_2834363_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2834457_2835975_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2836016_2837645_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2837752_2838634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2841746_2842121_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2842145_2842484_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_050818159.1|2842527_2844171_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.4	1.9e-86
WP_010931083.1|2844209_2845556_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2845663_2847085_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2847154_2847739_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2847841_2848792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2848926_2850033_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2850043_2851141_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2851285_2852491_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2852497_2853019_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2853015_2853507_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2853503_2853755_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2853735_2854221_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2854356_2857818_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2857835_2858720_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2858729_2859161_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2859407_2859911_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2859988_2861389_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2861463_2862339_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2862335_2863343_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2863810_2864116_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2864206_2864797_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2864987_2866004_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2869147	2935956	4116415	transposase,protease	uncultured_Mediterranean_phage(33.33%)	48	NA	NA
WP_005012808.1|2869147_2870098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2870196_2871147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2871143_2871938_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2871969_2872674_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2872748_2873549_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2873545_2873953_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2873949_2874591_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2874583_2876584_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2877844_2879176_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2879172_2880123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2881829_2882096_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2882803_2883142_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2887694_2888297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2888393_2889683_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2889740_2890472_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2890468_2891272_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2891268_2892357_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2892353_2893283_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2893431_2894577_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2894598_2895549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024000608.1|2895879_2899701_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2899857_2900526_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2900530_2902204_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2902222_2903542_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931115.1|2905916_2908085_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2908081_2913271_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2913360_2913675_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2913902_2914148_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2914242_2914761_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2914860_2916066_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2916181_2917579_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2917695_2918274_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2918346_2919738_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2919905_2920856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2921136_2921757_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2921753_2922167_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2922163_2923207_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2923262_2923451_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2923460_2924225_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2924315_2924972_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2925063_2925822_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2925847_2927449_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2927649_2928654_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2928754_2929018_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2929135_2929912_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2930502_2931453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2933836_2934949_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2935005_2935956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	2958248	3010033	4116415	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005012067.1|2958248_2959199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814555.1|2959394_2960867_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2960877_2961288_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2961351_2962398_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2962504_2963383_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2963396_2964593_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2964669_2966346_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_010929591.1|2966342_2967293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2967413_2968310_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2970587_2972813_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2972977_2974066_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2974022_2974676_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2974723_2975521_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2976052_2977003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2977077_2978232_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2978288_2979239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2979337_2979643_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2979671_2980106_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2980107_2981352_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2981348_2982059_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2982073_2982985_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2983347_2983752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2983748_2984207_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2984213_2985122_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2985118_2985985_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2985971_2986799_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2986809_2987937_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2989014_2990253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2990294_2991557_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2991563_2992316_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2992367_2992553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2992828_2993293_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2993324_2993984_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2994128_2996237_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2996233_2997184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2997287_2997908_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2997999_2998752_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2999886_3001011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3001056_3001425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3001666_3002617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3003652_3004195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3004580_3005531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3005527_3006493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3006562_3007399_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3007911_3009021_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3009082_3010033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	3132646	3196480	4116415	transposase,protease,tRNA	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3132646_3133597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3133742_3134867_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3135072_3135636_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3136630_3137113_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3137270_3138518_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3138738_3139395_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3139430_3140660_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3140927_3141878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3141969_3143385_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3143390_3144527_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3144596_3144968_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3145055_3145802_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3145838_3146903_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3147091_3147484_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3147493_3147922_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3148217_3149315_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3149656_3151021_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3151079_3151631_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3151644_3152319_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3153575_3154385_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3154387_3155224_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3155238_3155931_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3155942_3156332_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3156437_3157826_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3157942_3159439_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3160507_3161458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3161454_3163914_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3164010_3165456_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3165459_3166647_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3166715_3167225_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3167426_3167879_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3167851_3168418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3168440_3171503_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3171808_3174736_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3174757_3175954_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3176271_3176799_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3176937_3177513_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3177520_3178984_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3178994_3180122_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3180251_3181379_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3181404_3181644_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3181924_3182428_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3182600_3183542_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3183553_3184651_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3185616_3186963_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3186972_3187422_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3187511_3187946_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3188024_3188573_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3188655_3190026_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3190036_3190630_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3190701_3192585_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3192622_3193522_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3193518_3194382_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_077070127.1|3194480_3195431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3195529_3196480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	3390008	3443749	4116415	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3390008_3390959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3391363_3392008_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3392032_3392617_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3392717_3393335_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3393337_3395053_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3395049_3395358_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3395374_3395992_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3396036_3396339_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3396439_3397294_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3397481_3397706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3397875_3398148_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3398565_3398973_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3399342_3400137_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3400237_3401473_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3401541_3402558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3402569_3403946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3403942_3405139_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3405135_3406674_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3406670_3407930_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3409870_3410821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3411587_3412682_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3412674_3414009_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3413962_3414646_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3414671_3415835_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3415831_3416833_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3416832_3417705_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3417701_3418451_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3418447_3419239_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3419235_3420375_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3420650_3421436_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3421469_3422252_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3422255_3422645_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3423784_3424648_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3424683_3425772_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3425768_3426719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3427072_3430051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3430977_3431856_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3433804_3434755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3434751_3435219_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3435261_3436032_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3436052_3436853_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3436863_3438273_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3438367_3439153_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3439392_3440409_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3440516_3440909_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3441046_3441727_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3441731_3442703_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3442798_3443749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	3449903	3509203	4116415	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3449903_3451667_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3451778_3452657_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3452769_3453585_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3453588_3453840_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010930525.1|3453924_3454941_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3455271_3455493_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3457853_3458771_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3459268_3460477_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3460556_3462128_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3462245_3463181_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3463369_3464314_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3464881_3470599_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3470604_3471732_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3471787_3472414_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3472685_3473702_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3473797_3474508_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3474504_3475494_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3475589_3477221_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3477223_3477961_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3478116_3478989_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3479257_3480478_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3480474_3481134_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3481205_3481838_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3481867_3482386_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3482396_3483506_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3483552_3484407_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3484408_3485311_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3486533_3487484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3489240_3490230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3490226_3490385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3490405_3491194_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3491190_3492222_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3492240_3492804_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3492859_3494380_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3494643_3495348_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3495355_3496093_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3496198_3496573_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3496615_3497905_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3497901_3499071_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3499067_3499907_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3499966_3500902_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3500914_3501865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3501963_3502926_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3502957_3503317_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3503441_3504344_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3504345_3506118_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3506152_3506929_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3508252_3509203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	3524141	3593294	4116415	transposase,tRNA	Planktothrix_phage(10.0%)	55	NA	NA
WP_005012808.1|3524141_3525092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3525220_3526354_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3526397_3527303_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3527305_3529006_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3529002_3529923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3529930_3530908_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3530966_3532001_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3533975_3534212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3534338_3535202_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3535290_3536112_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3536191_3536929_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3536925_3537918_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3538031_3538694_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3538738_3539887_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3542210_3543161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929965.1|3545633_3546560_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|3546578_3547034_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|3547885_3548677_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|3548708_3549329_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|3549325_3549955_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|3549967_3550576_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|3550572_3551562_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|3551667_3552882_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|3554833_3555784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|3557217_3558504_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|3558669_3558978_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|3558978_3559644_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|3559684_3561475_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|3561587_3562448_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|3562444_3563650_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|3563646_3564531_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|3566047_3566482_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|3566444_3567443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|3567554_3568700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|3568774_3570103_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|3570136_3570727_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|3571016_3571811_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|3572980_3573715_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|3573721_3574588_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_029443756.1|3576418_3576916_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|3577212_3578163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815183.1|3579350_3580223_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3580219_3581170_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3581268_3582219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3582323_3582554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3582680_3583070_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3583086_3585468_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3585460_3586837_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3586852_3587848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3587866_3588859_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3589099_3589660_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3589664_3589991_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3590027_3590840_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3590850_3591933_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_077070128.1|3592019_3593294_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 32
NZ_CP011175	Bordetella pertussis strain E976 chromosome, complete genome	4116415	4037537	4080395	4116415	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_014486111.1|4037537_4038488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4038657_4039884_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4040083_4040950_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4040942_4041905_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4042005_4042956_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4043054_4044005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4044001_4045495_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4045491_4048599_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4048595_4051664_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4051660_4052911_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4053091_4053853_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4053885_4054536_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4054538_4055378_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4055618_4056362_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4056444_4056792_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4056889_4057732_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4057776_4058664_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4058690_4058879_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4058976_4060434_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4060420_4061947_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4061965_4062433_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4062432_4063455_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4063575_4064295_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4064370_4065471_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4065472_4066663_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4066782_4067799_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4068117_4068789_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4068785_4069694_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4069905_4070553_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4074404_4075481_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4075491_4076301_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4076390_4077164_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|4077346_4078297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4078395_4079346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4079444_4080395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
