The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	27282	70036	4103251	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	77634	136108	4103251	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	164892	225403	4103251	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	233335	286923	4103251	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	555308	614608	4103251	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555308_556259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557582_558359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558393_560166_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560167_561070_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561194_561554_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561585_562548_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562646_563597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563609_564545_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564604_565444_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565440_566610_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566606_567896_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567938_568313_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568418_569156_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569163_569868_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570131_571652_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571707_572271_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572289_573321_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573317_574106_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574126_574285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574281_575271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577027_577978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579200_580103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580104_580959_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581005_582115_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582125_582644_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582673_583306_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583377_584037_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584033_585254_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585522_586395_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586550_587288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587290_588922_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589017_590007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590003_590714_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590809_591826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592097_592724_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592779_593907_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593912_599630_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600197_601142_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601330_602266_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602383_603955_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604034_605243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605740_606658_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609018_609240_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609570_610587_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610671_610923_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610926_611742_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611854_612733_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612844_614608_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	620763	674504	4103251	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620763_621714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621809_622781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622785_623466_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623603_623996_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624103_625120_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625359_626145_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626239_627649_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627659_628460_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628480_629251_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629293_629761_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629757_630708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632656_633535_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634461_637440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637793_638744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638740_639829_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639864_640728_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641867_642257_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642260_643043_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643076_643862_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644137_645277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645273_646065_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646061_646811_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646807_647680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647679_648681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648677_649841_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649866_650550_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650503_651838_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651830_652925_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653691_654642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656582_657842_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657838_659377_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659373_660570_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660566_661943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661954_662971_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663039_664275_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664375_665170_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665539_665947_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666364_666637_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666806_667031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667218_668073_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668173_668476_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668520_669138_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669154_669463_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669459_671175_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671177_671795_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671895_672480_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672504_673149_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673553_674504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	723442	763392	4103251	protease,integrase,tRNA,transposase	Pseudomonas_phage(33.33%)	28	720690:720708	740578:740596
720690:720708	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723442_724039_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724035_724818_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724890_725982_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726261_727389_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727730_728777_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728924_732044_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732045_734997_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735012_736224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736407_737358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737374_737869_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737872_738130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738673_739585_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739666_739951_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740734_741685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740578:740596	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742103_744668_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744712_746566_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746898_748470_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749911_750862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750947_751688_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751914_752862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754249_755200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755393_756209_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756341_757781_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757794_758136_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758190_759846_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759997_761008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761140_761914_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762441_763392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	773319	820937	4103251	holin,protease,tRNA,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773319_774270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774408_775161_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775399_777124_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777143_778403_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778417_779512_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779508_781635_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781647_782328_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782605_783979_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783980_785000_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785063_786035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786099_787050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787148_787991_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787990_788326_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788396_789815_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790094_791135_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791214_791466_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791576_792740_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793023_793878_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793874_794765_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794807_795719_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795745_796438_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796452_797433_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797445_799587_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799635_800604_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800594_801263_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801223_802159_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802155_803052_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803048_803771_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803761_803926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804099_804603_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804879_805995_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806137_806602_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806749_807289_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807310_808645_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808658_808964_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809388_809970_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810051_811002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811100_812051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812491_813397_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813452_815057_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815313_816819_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816833_817298_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817587_818538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818700_819231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819230_819542_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819986_820937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	996797	1099190	4103251	tRNA,transposase	Bacillus_virus(27.27%)	95	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010929591.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052712_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059920_1060091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065731_1066484_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082195_1082360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087300_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1129576	1200547	4103251	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152261_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182392_1182731_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183438_1183705_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185411_1186362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186358_1187690_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188950_1190951_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190943_1191585_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191581_1191989_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191985_1192786_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192860_1193565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193596_1194391_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194387_1195338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195436_1196387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196485_1196920_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197002_1199339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199530_1200547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1247941	1328816	4103251	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287595_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1448210	1500358	4103251	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1448210_1449161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449327_1449681_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449693_1450056_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450097_1450523_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450725_1451982_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452180_1453161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453310_1454552_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454650_1455601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455609_1456305_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459126_1459726_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459736_1461902_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461925_1463710_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463709_1463799_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464493_1464766_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464765_1466832_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466828_1467779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467877_1468828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468943_1469276_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469272_1469959_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469945_1470905_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470946_1473307_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473306_1473939_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474040_1475381_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475427_1476783_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476908_1477553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477497_1477815_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478087_1478603_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478696_1478858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478873_1479629_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479967_1480174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480181_1480841_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481135_1483340_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483450_1484674_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484796_1485771_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485838_1487032_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487046_1487847_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487843_1489700_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489696_1490302_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490320_1491706_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492431_1493658_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493746_1494529_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494627_1495578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495604_1496378_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496389_1497631_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499407_1500358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1544283	1612369	4103251	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1544283_1544772_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544889_1545468_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545573_1545942_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546040_1546991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1546997_1548110_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548796_1549999_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550034_1550181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550202_1552863_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552875_1556280_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556947_1559173_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559219_1559546_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559596_1560205_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560303_1561254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561323_1562088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562084_1562684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562787_1563639_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563698_1564325_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564321_1565272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565370_1566483_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566472_1567474_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567579_1569091_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569087_1570392_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570503_1571064_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571331_1571886_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572341_1572557_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572811_1575409_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575405_1576593_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1577251_1577866_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1577954_1579082_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579093_1579999_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580891_1581842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582023_1582776_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582844_1583504_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583500_1584229_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584241_1586521_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586545_1586749_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586790_1587423_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587558_1588476_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588472_1589186_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589423_1590194_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590198_1590798_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591042_1592533_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592591_1592876_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1593013_1593169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1593441_1594368_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594504_1595245_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595411_1596788_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596969_1597875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599526_1601329_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1601455_1602097_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602195_1603146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603167_1604388_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604573_1605986_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606049_1607117_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607116_1608604_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608613_1609558_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609717_1610416_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610493_1611399_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611418_1612369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1648318	1703909	4103251	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648318_1649269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649327_1650101_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650093_1651650_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651646_1652597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653923_1654526_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654765_1655467_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655460_1656243_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656427_1657378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657476_1658214_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658403_1659162_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659208_1660198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660375_1661344_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662883_1663852_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663860_1664802_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665275_1666286_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666276_1667791_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667787_1669134_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1669136_1670171_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670220_1671846_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672398_1673349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673453_1674401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674454_1676269_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676261_1676936_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677065_1680140_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680153_1680453_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680767_1681391_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1681634_1682504_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682481_1683426_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683511_1684438_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_162494038.1|1684550_1685330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685320_1686517_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686547_1687498_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687719_1688409_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688473_1689229_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689280_1690273_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690282_1691236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691351_1692314_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693715_1694144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694140_1695091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1695384_1696122_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696545_1697733_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1697736_1698117_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699836_1700808_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700821_1701535_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701539_1702457_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702563_1702860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702958_1703909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1873408	1945005	4103251	tRNA,transposase	Faecalibacterium_phage(33.33%)	59	NA	NA
WP_010931070.1|1873408_1874359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930677.1|1876239_1877952_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_010930678.1|1878408_1879227_+	membrane protein	NA	NA	NA	NA	NA
WP_003820212.1|1879324_1879501_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_003820213.1|1879570_1880095_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010930679.1|1880055_1880499_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_010930680.1|1880500_1880977_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_010930681.1|1880973_1881915_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_010930682.1|1881970_1883320_+	pilus assembly protein N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930683.1|1883316_1884666_+	pilus assembly protein CpaE	NA	NA	NA	NA	NA
WP_010930684.1|1886024_1886945_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_014486078.1|1886953_1887940_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010930685.1|1887939_1888782_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930686.1|1889205_1891449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820229.1|1891470_1892862_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810189.1|1892941_1893637_+	DUF2968 domain-containing protein	NA	NA	NA	NA	NA
WP_010930687.1|1893736_1894204_+	DUF1178 family protein	NA	NA	NA	NA	NA
WP_010930688.1|1894261_1894966_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930689.1|1895112_1895682_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930690.1|1895678_1896089_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_003810194.1|1896208_1896766_-	elongation factor P	NA	NA	NA	NA	NA
WP_010930691.1|1896908_1898021_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_010930692.1|1898036_1899239_-	DUF2863 family protein	NA	NA	NA	NA	NA
WP_010930693.1|1899408_1900185_+	dioxygenase	NA	NA	NA	NA	NA
WP_003820240.1|1900293_1902999_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_010930694.1|1903236_1903839_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930695.1|1904115_1906320_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930696.1|1906482_1907217_+	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_005012067.1|1907293_1908244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1908325_1908874_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1908876_1909215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1909609_1912201_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1912267_1913011_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1913023_1913410_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1913416_1913707_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1913842_1914142_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1914210_1915113_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1915116_1915887_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1916272_1916722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1916789_1917740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1917838_1918789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926318.1|1919150_1920062_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1920287_1921805_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1923036_1923999_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1924087_1924336_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1930893_1931337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1931401_1931674_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1931670_1932618_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1932799_1934194_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1934216_1934612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1934608_1935868_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1935989_1937045_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1937047_1937707_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1937722_1940380_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940457_1941660_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941656_1942169_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942291_1942729_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943005_1943956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944054_1945005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	1950728	2022902	4103251	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|1950728_1951679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952130_1953132_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953304_1954162_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954158_1955421_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955521_1955896_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1955968_1957156_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957240_1958011_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958124_1958889_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958839_1960141_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960137_1960944_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962688_1963660_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963816_1964329_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964487_1965462_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966462_1967257_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967282_1968089_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968199_1968790_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968800_1969979_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970081_1970456_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970708_1972040_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972106_1975337_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976827_1977574_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977658_1978120_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978157_1979216_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979178_1981008_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981047_1981620_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983044_1983866_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984184_1985507_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985866_1986502_+	membrane protein	NA	NA	NA	NA	NA
WP_005013747.1|1986461_1987412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988282_1989155_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989232_1990372_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990730_1991987_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991992_1992520_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992524_1993343_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993342_1994065_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994086_1994401_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994418_1995567_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995597_1996473_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996469_1997789_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997861_1999058_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999068_2000556_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003150_2004050_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004187_2005153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005251_2006202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006423_2007374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2007370_2007673_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2007832_2008237_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2008229_2009456_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2009452_2009899_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2009968_2010751_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2010792_2012298_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2012583_2013417_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2014854_2015676_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2015694_2016549_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2016552_2017524_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2018208_2018385_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2018870_2019821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019919_2020216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020390_2021743_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021885_2022902_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2036108	2080431	4103251	transposase	Bacillus_phage(25.0%)	44	NA	NA
WP_010929577.1|2036108_2037059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037711_2038662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038745_2040563_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040636_2041284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041296_2042226_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042395_2042860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043107_2043788_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043836_2045528_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045543_2046095_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046091_2046463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046575_2047412_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047422_2047947_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048044_2048224_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048353_2049328_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049458_2049815_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049804_2050680_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050778_2051663_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051684_2052980_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053928_2054579_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2054666_2056187_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056444_2058310_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059355_2060306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060323_2060464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061278_2061638_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061625_2063062_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063058_2063712_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063708_2064902_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065005_2066280_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066276_2067227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2067393_2068368_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2068364_2068508_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2070129_2070792_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2070794_2070971_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2070967_2071906_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2071997_2073488_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2073573_2073726_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2073739_2073979_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2074074_2074818_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2074850_2075351_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2075413_2076373_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2076369_2077131_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2077146_2078232_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2078431_2079382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079480_2080431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2090671	2149941	4103251	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2090671_2091571_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091589_2092894_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092859_2093966_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094053_2094290_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094428_2095499_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095502_2096858_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2096884_2098045_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098047_2098686_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2098687_2099974_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2100032_2101328_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101334_2101841_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101837_2102986_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103013_2103439_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103761_2106644_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106736_2107492_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108257_2109607_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109705_2110656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110754_2111705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111778_2112252_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112277_2113486_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113482_2114256_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114255_2114879_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115044_2115305_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115608_2116190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116256_2116511_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116497_2119122_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2119193_2120012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2120008_2120614_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2120651_2121785_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2123500_2123875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2123972_2125247_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2125250_2126828_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2127734_2129090_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2129086_2130721_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2130713_2131544_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2131561_2132506_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2132558_2134133_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2134180_2134540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2134532_2134853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2134968_2135901_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2136003_2136960_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2137109_2138447_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2138451_2139708_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2139903_2140950_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2141007_2141376_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2141506_2142379_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2142455_2143358_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2144414_2145632_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2146905_2147856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148056_2148866_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2148990_2149941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2163134	2227955	4103251	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2163134_2164085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164655_2164868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164885_2165617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165651_2166293_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166285_2166954_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169166_2169943_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169964_2171122_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171118_2171550_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2171546_2172350_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172363_2172765_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172831_2173803_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173868_2175092_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175319_2176270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176393_2178847_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179035_2180340_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180444_2181098_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181100_2182411_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2182607_2183168_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183279_2183480_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183825_2184392_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184475_2184679_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184985_2185306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185347_2185629_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185703_2186960_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187342_2187672_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189242_2190064_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190063_2191203_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191209_2192106_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2192102_2194028_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194387_2197000_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197052_2199353_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199349_2200558_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2200819_2201194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201190_2202141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202239_2204234_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204293_2205259_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205248_2208110_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208112_2208619_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208723_2209932_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209933_2210872_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211033_2211507_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211503_2212454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2212564_2213005_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2213133_2214363_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2214401_2215223_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2215276_2216428_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2216519_2217008_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2219558_2222108_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2222178_2224752_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2225017_2225218_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2225249_2225411_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2225468_2225807_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2225955_2226906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2227004_2227955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2605576	2672076	4103251	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605576_2606527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606896_2607469_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607471_2608482_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608474_2608975_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608985_2609327_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2609338_2610130_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610146_2610416_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610438_2611227_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611273_2612290_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612506_2613949_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614127_2615747_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615867_2617688_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617766_2619299_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2619332_2620979_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621048_2622071_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622088_2623222_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623224_2623914_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623913_2624699_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624742_2625507_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625545_2626967_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627032_2627737_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627784_2628204_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628216_2628624_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628807_2629518_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629644_2629935_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629952_2630435_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634940_2636095_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636400_2637417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637663_2638452_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638518_2639199_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639195_2639966_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640064_2641015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641070_2641988_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641998_2643177_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643196_2644192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645780_2646389_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646376_2647417_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647434_2648397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648393_2649587_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649583_2650381_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650406_2651393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651411_2653451_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2653652_2654333_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654346_2655258_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655254_2655833_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655971_2656877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656884_2660304_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660291_2662892_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663847_2664480_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664873_2665632_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2665628_2666831_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667018_2667969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668876_2670022_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670008_2670764_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670880_2671060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671125_2672076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2871464	2944788	4103251	protease,tRNA,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2871464_2872820_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874298_2875021_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875075_2876059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876188_2877139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877135_2878038_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878125_2878884_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878896_2879988_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880085_2881513_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881742_2882957_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883002_2885873_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888283_2888772_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888897_2891594_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891748_2894031_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2894203_2894827_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2894925_2895876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895922_2896477_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896544_2897390_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897459_2898428_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2898427_2899291_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2902123_2906050_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2906785_2910016_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910297_2911125_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911158_2911854_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2911846_2913127_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913136_2914114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914095_2915796_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2915898_2917002_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917032_2917788_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2917794_2919315_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919357_2919660_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919656_2920289_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920367_2922233_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922229_2923024_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923052_2924168_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925072_2925951_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925950_2926775_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926942_2927893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928105_2930955_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930936_2931665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931805_2933269_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933265_2933637_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933654_2934968_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935004_2935463_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935575_2936526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936522_2937536_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937675_2938662_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939020_2939728_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940308_2941259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941410_2942013_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942031_2942664_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942708_2942960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942901_2944788_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	2956513	3006126	4103251	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2956513_2957464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957490_2957955_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959161_2961450_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961566_2962439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962481_2963636_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963670_2964501_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964584_2966129_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966171_2966531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966532_2966946_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966986_2967304_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967388_2968105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968368_2969790_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969856_2972604_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972936_2973953_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974288_2974930_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975020_2976457_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976614_2977688_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977684_2978821_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2978965_2979310_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979376_2981257_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981306_2982242_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2982574_2983591_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984528_2985956_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985952_2986975_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986964_2987438_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987578_2988466_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988462_2990106_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2990102_2991152_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991940_2992957_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993056_2993689_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993697_2994087_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994139_2995192_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996055_2997762_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997835_2998336_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998350_3000408_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000434_3000728_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000829_3001777_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001789_3002665_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002785_3003346_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003380_3003704_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004139_3004877_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005175_3006126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	3027077	3099571	4103251	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3027077_3028028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028070_3029246_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029467_3031258_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031270_3032932_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032944_3035650_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035942_3037697_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037693_3038320_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038316_3039168_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3039243_3041358_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041544_3042159_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042304_3042556_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042625_3044008_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044004_3047184_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3047991_3048909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048960_3049692_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049751_3050324_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051832_3052849_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052986_3054036_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054140_3055091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055186_3055912_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056122_3056503_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3056808_3057681_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3057688_3058069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058222_3059497_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3060984_3061893_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3062690_3063755_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3065591_3066593_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3066815_3067457_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067539_3069366_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3069609_3070539_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070538_3071288_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071359_3072274_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072293_3073439_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073499_3074411_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074491_3075442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075540_3076125_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076159_3077149_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077145_3078087_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078083_3079304_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079346_3079661_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079852_3080212_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080213_3081929_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082116_3082788_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082802_3084131_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084127_3085027_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085113_3086199_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3086191_3087325_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3087324_3090006_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090376_3090958_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091083_3091809_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091805_3092483_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092698_3093880_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094652_3094835_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094864_3095815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095944_3096337_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096613_3097525_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097649_3098624_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098620_3099571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	3113078	3166596	4103251	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3113078_3114029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114141_3114393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3114898_3116017_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116136_3116349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116508_3116730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3116782_3117733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3118909_3120280_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120312_3121104_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121116_3122172_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122197_3123073_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123178_3123427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123461_3124916_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3124912_3125434_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125462_3126815_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127038_3129927_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132071_3133373_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3133387_3134104_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134385_3135066_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3135077_3135245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3135353_3135500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3135593_3136253_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3136651_3138484_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138480_3139431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3140594_3142310_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3142320_3142812_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3142884_3143901_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3144068_3144848_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3144866_3145394_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3145687_3145957_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3146047_3148207_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3148327_3149047_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3149043_3149994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3150134_3151352_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3151345_3151957_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3152590_3153568_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3153711_3154458_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3154479_3154926_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3155713_3157945_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3157967_3158768_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3159049_3160282_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3160392_3161382_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3161412_3162801_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3164399_3165383_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3165579_3166596_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	3231054	3304216	4103251	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3231054_3232005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232001_3233021_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233030_3235739_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235886_3236543_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236641_3237592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237739_3238633_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238832_3240527_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240561_3241488_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241556_3242654_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242672_3243536_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243547_3244330_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244326_3245445_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245441_3246974_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247014_3248022_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248166_3248889_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248904_3249927_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250243_3250978_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251062_3252808_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252804_3253557_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253601_3254558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254646_3255213_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255220_3256081_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256110_3256839_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256870_3257554_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258391_3259306_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259370_3260279_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260369_3261794_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261795_3263118_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263114_3265253_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265330_3270451_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270551_3270860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270929_3271487_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271502_3272984_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3275154_3276492_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276526_3278524_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278541_3280590_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280720_3281587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281855_3282821_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282935_3284084_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3284508_3284820_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284853_3285114_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285263_3286397_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286467_3287604_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287769_3288564_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288626_3289070_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289185_3290136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3290237_3290666_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3290738_3292934_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293155_3294106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294065_3294590_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294721_3295693_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295812_3298257_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298272_3298863_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299106_3300057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3300214_3301480_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3301513_3302611_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3303265_3304216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	3315503	3415616	4103251	tRNA,protease,tail,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3315503_3316454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317185_3317563_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317547_3318249_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318392_3319085_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319084_3320188_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320297_3322670_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322666_3324226_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324250_3325048_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325079_3326225_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326329_3327772_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327774_3329004_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331141_3332092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333221_3333779_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333754_3334105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334273_3335068_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335064_3336114_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336113_3336803_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336889_3337387_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337418_3338735_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338751_3339726_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339762_3340221_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340220_3340901_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340903_3341332_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341384_3343115_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343180_3343753_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343733_3344420_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344775_3345447_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345775_3345997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3345996_3346278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346274_3346790_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346789_3347341_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347319_3347562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347566_3348379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348378_3348642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348682_3348880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348860_3349277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349281_3353238_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353230_3353620_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353616_3354150_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354217_3354577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354586_3357199_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357224_3357515_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357532_3357862_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357871_3358390_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358644_3359145_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359152_3359575_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359571_3359970_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359966_3360362_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3360361_3360562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360563_3361046_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361108_3361360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362034_3362985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363413_3364016_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364138_3364381_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364386_3365442_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365470_3366889_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366891_3368169_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368155_3368641_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369280_3370231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370487_3371177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371169_3371421_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3371975_3372587_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372658_3372865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373116_3374067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374165_3375239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375406_3376201_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376240_3376765_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3376757_3378500_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3378709_3379468_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379470_3380178_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380194_3381076_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381086_3381845_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3381813_3382569_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3382638_3384057_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384078_3384729_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3384862_3385198_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385286_3386237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386313_3388134_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388138_3389212_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389334_3390303_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390376_3391288_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391306_3391879_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3391959_3392508_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392507_3394097_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394166_3394406_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394446_3395472_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395537_3396719_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3396815_3397268_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397277_3398618_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3398934_3399972_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400353_3400713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3400796_3401738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3401812_3402763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403056_3404151_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3404232_3405114_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405135_3405975_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406050_3407568_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3407664_3408765_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3408781_3409204_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3409226_3409439_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409485_3410406_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3410588_3411338_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411340_3411670_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3411876_3413310_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3413321_3413705_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3413766_3414567_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3414665_3415616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	3702231	3835157	4103251	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	114	3746874:3746891	3791514:3791531
WP_005013747.1|3702231_3703182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3703178_3703814_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3703943_3704843_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3704938_3705430_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3705476_3706442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3707575_3708817_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3708930_3709947_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3709981_3710458_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3710600_3711509_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3711622_3712735_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3712835_3713321_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3713457_3714708_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3714809_3715322_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3715420_3716371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3716436_3717375_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3717397_3718024_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3718020_3718677_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3718673_3719276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3719282_3719870_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3720050_3720620_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3720690_3722010_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3722116_3722308_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3722559_3723849_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3724003_3724999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3725083_3725758_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3725754_3726705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3726866_3728108_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3728104_3729049_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3729167_3730118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3730077_3731007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3731060_3731396_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3731440_3732205_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3732228_3732969_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3732976_3734530_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3734564_3735542_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3735814_3736396_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3736447_3743350_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3743796_3743928_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3744193_3744400_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3745404_3746064_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3746091_3747237_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3746874:3746891	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3747377_3747713_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3747787_3748648_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3748911_3749613_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3749782_3750178_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3750287_3751238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3751248_3751890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3752056_3752299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3752397_3753348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3753383_3753851_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3754084_3754462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3754458_3754641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3754644_3755631_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3755627_3756275_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3756332_3756860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3756896_3758081_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3758091_3758433_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3758545_3758746_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3758742_3759732_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3761218_3763189_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3763430_3763829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3763837_3764761_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3765218_3766169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3766399_3768091_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3768139_3768412_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3768408_3768780_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3768875_3769010_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3769415_3770825_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3770827_3771937_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3772031_3774485_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3774603_3775395_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3775514_3776942_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3776980_3777952_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3778370_3779534_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3779621_3780467_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3782023_3782974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3783528_3783903_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3783977_3785036_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3785059_3786010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3788891_3790061_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3790161_3791769_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3791514:3791531	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3791815_3793837_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3793865_3794111_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3794124_3795315_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3795510_3796476_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3796498_3797638_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3797849_3798812_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_077068993.1|3798935_3800960_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3801156_3803400_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3803678_3804137_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3805064_3807686_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3807749_3810377_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3810528_3811593_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3811592_3812363_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3812371_3813205_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3813217_3813997_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3814070_3815504_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3815531_3816290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3816345_3818196_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3818289_3818766_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3818782_3819703_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3819809_3820310_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3820683_3821376_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3821684_3822635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3822631_3826405_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3826741_3828631_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3828642_3829536_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3829639_3830437_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3830433_3831285_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3831346_3832027_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3832054_3832390_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3832390_3833350_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3833370_3833859_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3834140_3835157_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011174	Bordetella pertussis strain E809 chromosome, complete genome	4103251	4024373	4067231	4103251	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_010931661.1|4024373_4025324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025493_4026720_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026919_4027786_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027778_4028741_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028841_4029792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|4029890_4030841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030939_4031890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031988_4032939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032935_4034429_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034425_4037533_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037529_4040598_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040594_4041845_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042025_4042787_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042819_4043470_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043472_4044312_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044552_4045296_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045378_4045726_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045823_4046666_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046710_4047598_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047624_4047813_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047910_4049368_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049354_4050881_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050899_4051367_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051366_4052389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052509_4053229_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053304_4054405_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054406_4055597_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055716_4056733_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057051_4057723_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057719_4058628_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058839_4059487_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063338_4064415_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064425_4065235_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065324_4066098_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4066280_4067231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
