The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	27282	70036	4102209	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	77634	136108	4102209	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	164893	225404	4102209	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	233336	286924	4102209	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	555309	614609	4102209	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568428_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584034_585174_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	620764	674505	4102209	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	723443	763393	4102209	integrase,protease,tRNA,transposase	Pseudomonas_phage(33.33%)	29	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	773320	819889	4102209	protease,transposase,holin,tRNA	Bovine_alphaherpesvirus(10.0%)	45	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775436_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779509_781573_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810052_811003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|811443_812349_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|812404_814012_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|814265_815771_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|815785_816250_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|816539_817490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|817652_818183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|818182_818494_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|818938_819889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	995749	1098142	4102209	transposase,tRNA	Bacillus_virus(27.27%)	95	NA	NA
WP_003813026.1|995749_996865_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|996965_997784_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|997881_998493_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|998652_1000029_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1000091_1000550_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1000634_1001330_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1001391_1001673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1002235_1002988_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1003032_1004109_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1004105_1005056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005158_1005821_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005915_1006086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006438_1007440_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007442_1008639_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008659_1009463_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1009543_1009840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009870_1010434_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010474_1011332_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011339_1012089_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012110_1012983_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1013011_1013791_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013824_1014622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017276_1017669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017662_1018523_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018526_1019489_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020265_1020955_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021815_1022766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023115_1023985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024055_1024751_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024740_1025250_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025246_1026467_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026414_1027317_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_077085651.1|1028203_1029490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029528_1030902_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030940_1031642_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031940_1032930_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033030_1033492_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033507_1034056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1034197_1035673_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035778_1036870_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036873_1037656_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037665_1038454_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039579_1040014_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1040010_1041021_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041064_1041991_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042277_1042646_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1042862_1043813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043857_1046284_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046332_1047025_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047097_1048297_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048314_1049220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049335_1050265_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050290_1051637_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1051649_1052414_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1052427_1053210_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053402_1054353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054414_1055524_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056036_1056873_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1056999_1057908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057904_1058855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1058872_1059043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1059240_1059783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060818_1061769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1062010_1062379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062424_1063549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1064683_1065424_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065527_1066148_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066251_1067202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067198_1069307_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069451_1070111_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070142_1070607_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070882_1071068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071119_1071872_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071878_1073141_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073182_1074421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075498_1076626_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076636_1077464_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077450_1078317_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079683_1080088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080179_1081130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1081147_1081312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1081499_1082411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082425_1083136_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083132_1084377_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084378_1084813_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084841_1085147_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085245_1086196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1086252_1087401_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087481_1088432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088963_1089761_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089808_1090462_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090418_1091507_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091671_1093897_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096174_1097071_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1097191_1098142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1128528	1199499	4102209	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1128528_1129479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129535_1130648_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133031_1133982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134572_1135349_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135466_1135730_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135830_1136835_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137035_1138637_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138662_1139421_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139512_1140169_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140259_1141024_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141033_1141222_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141277_1142321_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142317_1142731_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142727_1143348_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143628_1144579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144746_1146138_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146210_1146789_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146905_1148303_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148418_1149624_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149723_1150242_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150336_1150582_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150809_1151124_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1151222_1156403_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156399_1158568_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158623_1160939_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160943_1162263_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162281_1163955_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163959_1164628_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164784_1168606_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1168936_1169887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169908_1171054_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171202_1172132_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172128_1173217_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173213_1174017_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1174013_1174745_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174802_1176092_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176188_1176791_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181344_1181683_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182390_1182657_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184363_1185314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185310_1186642_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187902_1189903_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189895_1190537_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190533_1190941_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190937_1191738_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191812_1192517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192548_1193343_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193339_1194290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1194388_1195339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195437_1195872_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195954_1198291_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198482_1199499_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1240570	1322705	4102209	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1240570_1241521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1241608_1243261_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1243271_1244060_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1244059_1244530_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1244604_1245918_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1245971_1246577_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1246893_1247844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1247840_1248791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249051_1250080_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250159_1251458_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251454_1252036_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252348_1256395_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256635_1264297_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264293_1265244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266383_1266857_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266996_1267617_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1267752_1268553_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268607_1269699_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1269720_1270164_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270192_1270825_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270935_1271352_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271344_1272037_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272143_1272518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1272594_1273404_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273499_1274444_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274482_1275454_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275544_1275982_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276040_1276922_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277925_1278786_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278818_1280201_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280197_1281217_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281589_1282084_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282091_1282832_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282912_1284517_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284556_1285345_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1285470_1287636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1288516_1289329_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289341_1289650_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289767_1291498_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1291499_1292702_-	lipoprotein	NA	NA	NA	NA	NA
WP_003810957.1|1293563_1294031_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294166_1295549_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295545_1296670_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296666_1299303_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299718_1300669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304415_1305027_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305249_1306710_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306806_1308399_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308752_1309010_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309011_1310352_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310447_1311137_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311149_1312580_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314304_1315126_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315136_1316708_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316736_1317714_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317740_1318544_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318540_1319335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319342_1320578_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1320591_1321005_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321754_1322705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1326816	1367486	4102209	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1326816_1327767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1327807_1328878_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1328900_1329779_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1329950_1330922_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1331084_1331927_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1332088_1332769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1332762_1333932_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1333928_1334960_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1335027_1336245_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1336279_1337812_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1337892_1338516_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1338546_1339158_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1339193_1339664_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_050821245.1|1339838_1341101_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931017.1|1341137_1342652_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1342655_1343615_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1343643_1344447_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1344448_1346083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1346166_1347228_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1347426_1347696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1347699_1348224_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1348639_1349590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1349586_1350621_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1350729_1351368_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1351662_1351890_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1352012_1352726_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1352970_1353921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1354060_1354306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1354420_1355869_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1355979_1356930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1356926_1357376_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1357570_1358521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1358856_1359054_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1359069_1359429_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1359503_1360526_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1360538_1362956_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1362973_1363303_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1363361_1363772_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1364271_1365363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1365546_1366143_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1366242_1366425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1366535_1367486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1447163	1499316	4102209	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1447163_1448114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1448280_1448634_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448646_1449009_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449050_1449476_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449678_1450935_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451133_1452114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452263_1453505_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1453603_1454554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454562_1455258_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458079_1458679_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458689_1460855_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460878_1462663_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462662_1462752_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463446_1463719_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463718_1465785_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465781_1466732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1466830_1467781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467896_1468229_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468225_1468912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468898_1469858_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469890_1472260_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472259_1472892_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472993_1474334_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474380_1475736_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476026_1476263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476450_1476768_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477040_1477556_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1477826_1478582_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478920_1479127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479134_1479794_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480088_1482293_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482403_1483627_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483749_1484724_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484791_1485985_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485999_1486800_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486796_1488653_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488649_1489255_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489273_1490659_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491384_1492611_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492699_1493482_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493580_1494531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494557_1495331_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495342_1496584_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498365_1499316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1543241	1611327	4102209	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1543241_1543730_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543847_1544426_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544531_1544900_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544998_1545949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545955_1547068_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547754_1548957_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1549160_1551821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1551833_1555238_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555905_1558131_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558177_1558504_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558554_1559163_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559261_1560212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560281_1561046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1561042_1561579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561745_1562597_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562656_1563283_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563279_1564230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564328_1565441_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565430_1566432_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566537_1568049_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568045_1569350_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569461_1570022_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570289_1570844_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571299_1571515_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571769_1574367_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574363_1575551_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1576209_1576824_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1576912_1578034_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578051_1578957_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579849_1580800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580981_1581734_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581802_1582462_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582458_1583187_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583199_1585479_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585503_1585707_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585748_1586381_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586516_1587434_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587430_1588144_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588381_1589152_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589156_1589756_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1590000_1591491_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591549_1591834_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1592399_1593326_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593462_1594203_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594369_1595746_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595927_1596833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598484_1600287_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1600404_1601055_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601153_1602104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602125_1603346_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603531_1604944_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1605007_1606075_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606074_1607562_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607571_1608516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608675_1609374_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609451_1610357_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610376_1611327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1647276	1702867	4102209	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1647276_1648227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648285_1649059_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649051_1650608_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650604_1651555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652881_1653484_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653723_1654425_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654418_1655201_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655385_1656336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656434_1657172_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657361_1658120_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658166_1659156_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659333_1660302_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661841_1662810_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662818_1663760_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664233_1665244_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665234_1666749_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666745_1668092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1668094_1669129_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669178_1670804_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671356_1672307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672411_1673359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673412_1675227_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675219_1675894_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1676023_1679098_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679111_1679411_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679725_1680349_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1680592_1681462_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681439_1682384_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682469_1683396_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683508_1684288_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684278_1685475_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685505_1686456_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686677_1687367_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687431_1688187_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688238_1689231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689240_1690194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690309_1691272_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692673_1693102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693098_1694049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1694342_1695065_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695503_1696691_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1696694_1697045_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698794_1699766_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699779_1700493_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700497_1701415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701521_1701818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701916_1702867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	1935631	2005283	4102209	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935631_1938289_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938366_1939569_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939565_1940078_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940200_1940638_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940914_1941865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941963_1942914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1943077_1944973_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1945086_1945254_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945317_1945554_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1945922_1947074_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948637_1949588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1950039_1951041_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951213_1952071_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952067_1953330_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953430_1953805_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1953877_1955065_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955149_1955920_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1956033_1956798_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956748_1958050_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1958046_1958853_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1960597_1961569_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961725_1962238_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962396_1963371_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964371_1965166_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965191_1965998_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966108_1966699_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966709_1967888_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967990_1968365_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968617_1969949_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1970015_1973246_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974736_1975483_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975567_1976029_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976066_1977125_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977087_1978917_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978956_1979529_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980953_1981775_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982093_1983416_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983775_1984411_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984370_1985321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986191_1987064_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987141_1988281_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988639_1989896_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989901_1990429_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990433_1991252_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991251_1991974_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991995_1992310_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992327_1993476_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993506_1994382_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994378_1995698_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995770_1996967_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996977_1998465_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2001059_2001959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002096_2003062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003160_2004111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004332_2005283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2016779	2066175	4102209	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2016779_2017730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018867_2019164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019338_2020691_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020833_2021850_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023829_2024843_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2024929_2025835_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025991_2026336_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026493_2026952_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026965_2029182_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029178_2030240_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030268_2031243_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031194_2032013_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2032025_2032634_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2032808_2033204_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033222_2034662_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034690_2035038_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035056_2036007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036659_2037610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037693_2039511_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039584_2040232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040244_2041174_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041343_2041808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2042055_2042736_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042784_2044476_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044491_2045043_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2045039_2045411_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045523_2046360_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046370_2046895_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2046992_2047172_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047301_2048276_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048406_2048763_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048752_2049628_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049726_2050611_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050632_2051928_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052876_2053527_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2053614_2055135_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2055392_2057258_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058303_2059254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059271_2059412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060226_2060586_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060573_2062010_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062006_2062660_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062656_2063850_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063953_2065228_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065224_2066175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2077379	2145755	4102209	tRNA,transposase,protease	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2077379_2078330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078428_2079379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079338_2079752_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2080036_2080336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080745_2083028_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2083493_2083688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2083713_2085744_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085763_2085976_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086253_2086793_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086906_2088202_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088278_2089436_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089619_2090519_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090537_2091842_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091807_2092914_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2093001_2093238_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093376_2094447_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094450_2095806_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2095832_2096990_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096995_2097634_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2097635_2098931_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2098980_2100267_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100282_2100789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100785_2101934_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101961_2102387_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102709_2105592_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105684_2106440_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107205_2108555_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2108653_2109604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2109677_2110151_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2110176_2111385_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2111381_2112155_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2112154_2112778_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2112943_2113204_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2113507_2114089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2114155_2114410_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2114396_2117021_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2117092_2117911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2117907_2118513_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2118550_2119684_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2121399_2121774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2121871_2123146_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2123149_2124727_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2125633_2126989_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2126985_2128620_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2128612_2129443_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2129460_2130405_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2130457_2132032_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2132079_2132439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2132431_2132752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2132867_2133800_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2133902_2134859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2135008_2136346_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2136350_2137607_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2137802_2138849_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2138906_2139275_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2139405_2140278_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2140354_2141257_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2142313_2143531_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2144804_2145755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2161033	2225854	4102209	tRNA,transposase,protease	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2161033_2161984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2162554_2162767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2162784_2163516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2163550_2164192_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2164184_2164853_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2167065_2167842_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2167863_2169021_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2169017_2169449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2169445_2170243_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2170262_2170664_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2170730_2171702_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2171767_2172991_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2173218_2174169_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2174292_2176746_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2176934_2178239_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2178343_2178997_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2178999_2180310_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2180488_2181067_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2181178_2181379_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2181724_2182291_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2182374_2182578_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2182884_2183205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2183246_2183528_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2183602_2184859_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2185241_2185571_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2187141_2187963_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2187962_2189102_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2189108_2190005_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2190019_2191927_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2192286_2194899_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2194951_2197252_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2197248_2198457_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2198718_2199093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2199089_2200040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2200138_2202133_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2202192_2203158_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2203147_2206009_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2206011_2206518_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2206622_2207831_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2207832_2208771_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2208932_2209406_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2209402_2210353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2210463_2210904_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2211032_2212262_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2212300_2213122_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2213175_2214327_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2214418_2214907_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2217457_2220007_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2220077_2222651_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2222916_2223117_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2223148_2223310_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2223367_2223706_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2223854_2224805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2224903_2225854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2504000	2562244	4102209	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2504000_2504951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2505430_2506087_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2506101_2507769_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2507771_2508401_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2508612_2509707_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2509851_2510664_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2510667_2512251_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2512421_2513552_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2513738_2514815_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2514896_2515547_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2515561_2516965_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2517248_2518067_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2518063_2518768_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2519667_2520783_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2520816_2521191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2521213_2522371_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2522383_2522617_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2523251_2526221_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2526235_2526445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2526596_2527226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2527222_2529280_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2529336_2530017_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2530013_2530574_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2530580_2531678_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2531830_2532424_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2532420_2533713_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2533726_2534269_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2534278_2535115_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2535148_2536210_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2536251_2537304_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2537319_2537622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2537763_2538714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2538731_2538896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2538892_2540587_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2540583_2541669_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2541716_2542616_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2542626_2543271_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2544292_2547535_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2547545_2548700_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2548926_2549889_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2549987_2550938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2551036_2551987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2551996_2552686_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2552745_2553183_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2553228_2554122_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2554169_2555342_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2555338_2556493_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2556689_2557040_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2557029_2557464_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2557480_2558431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2558578_2559046_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2559026_2560184_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2560249_2561176_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2561293_2562244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2604523	2671023	4102209	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930048.1|2604523_2605474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2605843_2606416_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2606418_2607429_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2607421_2607922_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2607932_2608274_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2608342_2609077_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2609093_2609363_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2609385_2610174_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2610220_2611237_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2611453_2612896_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2613074_2614694_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2614814_2616635_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2616713_2618246_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2618279_2619926_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2619995_2621018_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2621035_2622169_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2622171_2622861_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2622860_2623646_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2623689_2624454_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2624492_2625914_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2625979_2626684_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2626731_2627151_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2627163_2627571_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2627754_2628465_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2628591_2628882_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2628899_2629382_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2633887_2635042_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2635347_2636364_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2636610_2637399_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2637465_2638146_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2638142_2638913_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2639011_2639962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2640017_2640935_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2640945_2642124_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2642143_2643139_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2644727_2645336_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2645323_2646364_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2646381_2647344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2647340_2648534_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2648530_2649328_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2649353_2650340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2650358_2652398_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2652599_2653280_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2653293_2654205_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2654201_2654780_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2654918_2655824_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2655831_2659251_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2659238_2661839_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2662794_2663427_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2663820_2664579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2664575_2665778_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2665965_2666916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2667823_2668969_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2668955_2669711_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2669827_2670007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2670072_2671023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2814251	2877144	4102209	transposase,tRNA	Agrobacterium_phage(25.0%)	60	NA	NA
WP_005012067.1|2814251_2815202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930242.1|2815958_2818556_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	33.8	5.0e-126
WP_010930241.1|2818893_2819622_+	transcriptional regulator Btr	NA	NA	NA	NA	NA
WP_010930240.1|2819618_2820773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818584.1|2820806_2821148_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930239.1|2821144_2821762_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003810443.1|2821811_2822030_-	DUF3820 family protein	NA	NA	NA	NA	NA
WP_003818581.1|2822054_2822381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818580.1|2822525_2823431_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003810437.1|2823423_2823870_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003818579.1|2824097_2824526_+	copper resistance protein NlpE	NA	NA	NA	NA	NA
WP_010930238.1|2824533_2824752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930237.1|2824763_2825648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247642.1|2825804_2825999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930236.1|2826284_2826965_+	RraA family protein	NA	NA	NA	NA	NA
WP_010930235.1|2826961_2828164_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010928212.1|2828326_2829043_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810422.1|2829146_2829836_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003810420.1|2829828_2830518_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930234.1|2830537_2831275_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	5.9e-32
WP_029443824.1|2831348_2832323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930232.1|2832668_2833532_+	DMT family transporter	NA	NA	NA	NA	NA
WP_023995294.1|2833597_2834548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2834646_2835597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2835799_2836789_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2836872_2837226_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2837303_2837912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2839585_2840164_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2840188_2841142_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2841181_2842099_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2842220_2843147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2843154_2843901_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2844227_2845169_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2845395_2847093_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2847527_2848949_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2849102_2849882_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2850006_2850885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2850990_2852115_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2852160_2853123_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2853115_2853970_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2854077_2854488_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2854484_2855435_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2855533_2856415_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2856492_2857872_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2857910_2858756_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2858771_2859086_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2859118_2859655_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2859827_2860403_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2860505_2861243_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2861310_2862948_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2863055_2863811_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2863798_2864761_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2864868_2865663_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2865724_2867800_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2867964_2870340_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2870420_2871776_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2873254_2873977_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2874031_2875015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2875144_2876095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2876193_2877144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2894931	2957470	4102209	transposase,tRNA	Planktothrix_phage(18.18%)	49	NA	NA
WP_010930198.1|2894931_2895882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895928_2896483_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896550_2897396_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897465_2898434_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898433_2900230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2902129_2906056_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2906791_2910022_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2910303_2911131_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2911164_2911860_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2911852_2913133_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2913142_2914120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2914101_2915802_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2915904_2917008_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2917038_2917794_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2917800_2919321_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919363_2919666_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919662_2920295_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920373_2922239_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922235_2923030_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923058_2924174_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925078_2925957_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925956_2926781_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926948_2927899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928111_2930961_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930942_2931671_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931811_2933275_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933271_2933643_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933660_2934974_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935010_2935469_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935581_2936532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936528_2937542_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937681_2938668_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939026_2939734_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2940314_2941265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941416_2942019_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942037_2942670_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942714_2942966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942907_2944794_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944812_2945655_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945651_2947010_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947230_2948025_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948255_2949749_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949984_2952066_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952260_2953301_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953435_2954452_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954473_2955331_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955375_2956152_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2956364_2956502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2956519_2957470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	2966538	3028034	4102209	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	55	NA	NA
WP_003819794.1|2966538_2966952_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966992_2967310_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967394_2968111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968374_2969796_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969862_2972610_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972942_2973959_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974294_2974936_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975026_2976463_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976620_2977694_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977690_2978827_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2978971_2979316_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979382_2981263_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981312_2982248_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2982580_2983597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984534_2985962_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985958_2986981_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986970_2987444_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987584_2988472_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988468_2990112_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2990108_2991116_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991946_2992963_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993062_2993695_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993703_2994093_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994145_2995198_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996061_2997768_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997841_2998342_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998356_3000414_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000440_3000734_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000835_3001783_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001795_3002671_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002791_3003352_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003386_3003710_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004145_3004883_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005181_3006132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3006375_3006639_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3006712_3006994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3007010_3007871_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3007867_3008203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3008256_3008907_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3010587_3011532_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3011577_3011895_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3011897_3012836_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3013013_3013499_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3013517_3014066_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3014097_3014250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3015579_3016221_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3016375_3018724_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3018720_3019659_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3019684_3020875_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3020871_3021645_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3021674_3022868_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3022985_3023996_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3024013_3026050_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3026244_3026985_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3027083_3028034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	3051838	3114035	4102209	transposase	Bacillus_virus(15.38%)	54	NA	NA
WP_010929632.1|3051838_3052855_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052992_3054042_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054146_3055097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055192_3055918_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056128_3056509_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3056814_3057687_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3057694_3058075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058228_3059503_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3060990_3061899_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3062696_3063761_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3065597_3066632_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3066821_3067463_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067545_3069372_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3069615_3070545_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070544_3071294_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071365_3072280_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072299_3073445_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073505_3074417_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074497_3075448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075546_3076131_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076165_3077155_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077151_3078093_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078089_3079310_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079352_3079667_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079858_3080218_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080219_3081935_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082122_3082794_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082808_3084137_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084133_3085033_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085119_3086205_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3086197_3087328_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3087330_3090012_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090382_3090964_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091089_3091815_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091811_3092489_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092704_3093886_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094658_3094841_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094870_3095821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095950_3096343_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096619_3097531_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097655_3098630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098626_3099577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3099675_3100761_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3100858_3101269_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3101884_3103798_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3103933_3106546_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3106547_3107282_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3107445_3108627_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3108623_3108836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3108832_3109813_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3109858_3110686_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3110835_3112650_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3112704_3113088_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3113084_3114035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	3231060	3300063	4102209	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3231060_3232011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232007_3233027_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233036_3235745_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235892_3236549_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236647_3237598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237745_3238639_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238838_3240533_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240567_3241494_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241562_3242660_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242678_3243542_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243553_3244336_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244332_3245451_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245447_3246980_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247020_3248028_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248172_3248895_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248910_3249933_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250249_3250984_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251068_3252814_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252810_3253563_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253607_3254564_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254652_3255219_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255226_3256087_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256116_3256845_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256876_3257560_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258397_3259312_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259376_3260285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260375_3261800_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261801_3263124_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263120_3265259_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265336_3270457_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270557_3270866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270935_3271493_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271508_3272990_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3273044_3274898_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3275160_3276498_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276532_3278530_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278547_3280596_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280726_3281593_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281861_3282827_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282941_3284090_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3284514_3284826_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284859_3285120_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285269_3286403_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286473_3287610_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287775_3288570_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288632_3289076_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289191_3290142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3290264_3290672_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3290744_3292940_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293161_3294112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294071_3294596_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294727_3295699_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295818_3298263_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298278_3298869_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299112_3300063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	3315509	3415622	4102209	protease,tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3315509_3316460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317191_3317569_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317553_3318255_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318398_3319091_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319090_3320194_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320303_3322676_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322672_3324232_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324256_3325054_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325085_3326231_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326335_3327778_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327780_3329010_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331147_3332098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333227_3333785_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333760_3334111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334279_3335074_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335070_3336120_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336119_3336809_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336895_3337393_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337424_3338741_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338757_3339732_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339768_3340227_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340226_3340907_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340909_3341338_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341390_3343121_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343186_3343759_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343739_3344426_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344781_3345453_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345781_3346003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346002_3346284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346280_3346796_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346795_3347347_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347325_3347568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347572_3348385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348384_3348648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348688_3348886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348866_3349283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349287_3353244_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353236_3353626_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353622_3354156_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354223_3354583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354592_3357205_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357230_3357521_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357538_3357868_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357877_3358396_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358650_3359151_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359158_3359581_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359577_3359976_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359972_3360368_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3360367_3360556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360569_3361052_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361114_3361366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362040_3362991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363419_3364022_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364144_3364387_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364392_3365448_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365476_3366895_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366897_3368175_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368161_3368647_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369286_3370237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370493_3371183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371175_3371427_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3371981_3372593_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372664_3372871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373122_3374073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374171_3375245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375412_3376207_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376246_3376771_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3376763_3378506_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3378715_3379474_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379476_3380184_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380200_3381082_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381092_3381851_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3381819_3382575_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3382644_3384063_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384084_3384735_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3384868_3385204_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385292_3386243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386319_3388140_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388144_3389218_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389340_3390309_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390382_3391294_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391312_3391885_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3391965_3392514_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392513_3394103_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394172_3394412_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394452_3395478_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395543_3396725_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3396821_3397274_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397283_3398624_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3398940_3399978_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400359_3400719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3400802_3401744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3401818_3402769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403062_3404157_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3404247_3405120_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405141_3405981_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406056_3407574_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3407670_3408771_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3408787_3409210_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3409232_3409445_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409491_3410412_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3410594_3411344_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411346_3411676_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3411963_3413316_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3413327_3413711_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3413772_3414573_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3414671_3415622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011172	Bordetella pertussis strain E555 chromosome, complete genome	4102209	4001277	4066189	4102209	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4001277_4001763_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4001851_4001989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4001981_4002962_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4003228_4004038_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4004077_4004758_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4004751_4005210_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4005221_4005584_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4005666_4006350_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4006405_4006714_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4006732_4007047_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4007043_4009518_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4009525_4010917_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4010913_4011099_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4011077_4011779_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4011775_4012597_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4012577_4013702_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4013694_4014714_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4014919_4015810_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4016054_4016846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4016928_4017303_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4017280_4018690_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4018682_4020065_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4020399_4022004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4022081_4023053_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4023063_4023990_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4024380_4025331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025500_4026727_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026926_4027793_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027785_4028748_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028848_4029799_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029897_4030848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030946_4031897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031893_4033387_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033383_4036491_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036487_4039556_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039552_4040803_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4040983_4041736_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4041777_4042422_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4042430_4043411_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043510_4044254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044336_4044684_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044781_4045624_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045668_4046556_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046582_4046771_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046868_4048326_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048312_4049839_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049857_4050325_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050324_4051347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051467_4052208_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052262_4053363_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053364_4054555_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054674_4055691_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056009_4056681_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056677_4057586_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057797_4058445_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4062305_4063373_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063383_4064193_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064282_4065056_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065238_4066189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
