The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	27282	71085	4104313	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	78683	137157	4104313	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	165942	226465	4104313	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005013747.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|185375_189062_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189122_189686_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189693_190116_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190143_190563_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190591_191038_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191164_191662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191816_194087_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194162_195368_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195466_196417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196519_197155_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197151_198045_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198439_199540_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199621_199996_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200055_202920_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203064_203805_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203874_205086_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205114_206083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|206696_207647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207803_208127_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208231_209272_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209277_210057_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210102_210399_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210424_210700_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210756_211401_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211400_212087_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212285_213068_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213118_213844_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213875_215225_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215336_216269_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216726_219522_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220115_222959_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223129_223849_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223887_224436_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224590_225490_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225514_226465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	234397	287985	4104313	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234397_235348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235434_236385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236381_237332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237430_238228_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239177_239588_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240609_241353_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241396_242440_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242610_244713_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246123_247080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247098_247590_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247586_248942_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248942_249641_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249637_250339_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250591_251641_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251746_252688_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252684_254574_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254660_255299_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255441_256827_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256757_257294_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257445_258837_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258853_259834_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259969_260953_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261017_261917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262023_263778_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263785_264910_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264923_265904_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266634_267585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268144_268690_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268815_270393_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270408_271563_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271576_271702_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271698_273450_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273446_275126_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275188_275737_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276879_277158_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278201_279152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279138_279354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279429_279591_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280257_280707_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280716_281328_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281486_282335_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282360_283743_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283807_284449_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284588_285047_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285071_285848_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285901_287038_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287034_287985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	556370	615670	4104313	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556370_557321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558644_559421_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559455_561228_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561229_562132_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562256_562616_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562647_563610_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563708_564659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564671_565607_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565666_566506_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566502_567672_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567668_568958_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|569000_569375_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569489_570218_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570225_570930_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571193_572714_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572769_573333_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573351_574383_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574379_575168_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_077085061.1|575343_576333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578089_579040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580262_581165_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581166_582021_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582067_583177_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583187_583706_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583735_584368_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584439_585099_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585095_586235_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586584_587457_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587612_588350_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588352_589984_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590079_591069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591065_591776_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591871_592888_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593159_593786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593841_594969_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594974_600692_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601259_602204_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602392_603328_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603445_605017_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605096_606305_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606802_607720_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610080_610302_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610632_611649_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611733_611985_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611988_612804_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612916_613795_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613906_615670_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	621825	675566	4104313	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621825_622776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622871_623843_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623847_624528_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624665_625058_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625165_626182_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626421_627207_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627301_628711_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628721_629522_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629542_630313_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630355_630823_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630819_631770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633718_634597_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635523_638502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638855_639806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639802_640891_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640926_641790_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642929_643319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643322_644105_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644138_644924_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645199_646339_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646335_647127_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647123_647873_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647869_648742_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648741_649743_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649739_650903_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650928_651612_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651565_652900_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652892_653987_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654753_655704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657644_658904_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658900_660439_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660435_661632_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661628_663005_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663016_664033_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664101_665337_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665437_666232_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666601_667009_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667426_667699_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667868_668093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668280_669135_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669235_669538_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669582_670200_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670216_670525_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670521_672237_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672239_672857_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672957_673542_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673566_674211_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674615_675566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	724504	764454	4104313	protease,tRNA,transposase,integrase	Pseudomonas_phage(33.33%)	29	721752:721770	741640:741658
721752:721770	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724504_725101_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725097_725880_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725952_727044_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727323_728451_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728792_729839_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730349_733106_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733107_736059_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736074_737286_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737282_737483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737469_738420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738436_738931_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738934_739192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739735_740647_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740728_741013_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741796_742747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741640:741658	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743165_745730_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745774_747628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747960_749532_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750973_751924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|752009_752750_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752976_753924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755311_756262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756455_757271_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757403_758843_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758856_759198_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759252_760908_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761059_762070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762202_762976_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763503_764454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	774381	821999	4104313	transposase,tRNA,protease,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774381_775332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775470_776223_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776497_778186_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778205_779465_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779479_780574_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780570_782634_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782709_783390_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783667_785041_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785042_786062_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786125_787097_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787161_788112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788210_789053_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789052_789388_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789458_790877_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791156_792197_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792276_792528_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792638_793802_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794085_794940_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794936_795827_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795869_796781_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796807_797500_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797514_798495_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798507_800649_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800697_801666_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801656_802325_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802285_803221_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803217_804114_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804110_804833_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804823_804988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805161_805665_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805941_807057_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807199_807664_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807811_808351_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808372_809707_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809720_810026_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810450_811032_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811113_812064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812162_813113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813553_814459_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814514_816122_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816375_817881_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817895_818360_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818649_819600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819762_820293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820292_820604_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821048_821999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	997860	1100253	4104313	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997860_998976_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999076_999895_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999992_1000604_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000763_1002140_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002202_1002661_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002745_1003441_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003502_1003784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004346_1005099_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005143_1006220_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006216_1007167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007269_1007932_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008026_1008197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008549_1009551_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009553_1010750_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010770_1011574_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011654_1011951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011981_1012545_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012585_1013443_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013450_1014200_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014221_1015094_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015122_1015902_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015935_1016733_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019387_1019780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019773_1020634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020637_1021600_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022376_1023066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023926_1024877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025226_1026096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026166_1026862_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026851_1027361_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027357_1028578_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028525_1029428_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030314_1031601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031639_1033013_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033051_1033753_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034051_1035041_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035141_1035603_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035618_1036167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036308_1037784_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037889_1038981_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038984_1039767_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039776_1040565_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041690_1042125_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042121_1043132_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043175_1044102_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044388_1044757_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044973_1045924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045968_1048395_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048443_1049136_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049208_1050408_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050425_1051331_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051446_1052376_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052401_1053748_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053760_1054525_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054538_1055321_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055513_1056464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056525_1057635_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058147_1058984_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059110_1060019_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060015_1060966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061351_1061894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062929_1063880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064121_1064490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064535_1065660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066794_1067535_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067638_1068259_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068362_1069313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069309_1071418_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071562_1072222_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072253_1072718_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072993_1073179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073230_1073983_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073989_1075252_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075293_1076532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077609_1078737_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078747_1079575_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079561_1080428_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081794_1082199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082290_1083241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083610_1084522_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084536_1085247_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085243_1086488_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086489_1086924_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086952_1087258_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087356_1088307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088363_1089512_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089592_1090543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091074_1091872_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091919_1092573_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092529_1093618_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093782_1096008_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098285_1099182_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099302_1100253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1130639	1201610	4104313	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130639_1131590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131646_1132759_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135142_1136093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136683_1137460_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137577_1137841_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137941_1138946_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139146_1140748_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140773_1141532_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141623_1142280_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142370_1143135_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143144_1143333_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143388_1144432_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144428_1144842_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144838_1145459_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145739_1146690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146857_1148249_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148321_1148900_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149016_1150414_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150529_1151735_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151834_1152353_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152447_1152693_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152920_1153235_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153333_1158514_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158510_1160679_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160734_1163050_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163054_1164374_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164392_1166066_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166070_1166739_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166895_1170717_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171047_1171998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172019_1173165_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173313_1174243_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174239_1175328_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175324_1176128_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176124_1176856_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176913_1178203_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178299_1178902_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183455_1183794_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184501_1184768_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186474_1187425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187421_1188753_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190013_1192014_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1192006_1192648_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192644_1193052_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193048_1193849_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193923_1194628_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194659_1195454_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195450_1196401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1196499_1197450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197548_1197983_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198065_1200402_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200593_1201610_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1249004	1329879	4104313	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1249004_1249955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249951_1250902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251162_1252191_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252270_1253569_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253565_1254147_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254459_1258506_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258746_1266408_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266404_1267355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268494_1268968_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269107_1269728_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269863_1270664_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270718_1271810_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271831_1272275_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272303_1272936_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273046_1273463_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273455_1274148_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274254_1274629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274705_1275515_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275610_1276555_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276593_1277565_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277655_1278093_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278151_1279033_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280036_1280897_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280929_1282312_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282308_1283328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283700_1284195_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284202_1284943_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285023_1286628_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286667_1287456_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287581_1289747_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290627_1291440_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291452_1291761_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291878_1293609_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293610_1294813_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294885_1295554_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295675_1296143_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296278_1297661_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297657_1298782_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298778_1301415_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301830_1302781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306527_1307139_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307361_1308822_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308918_1310511_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310864_1311122_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311123_1312464_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312559_1313249_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313261_1314692_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316416_1317238_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317248_1318820_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318848_1319826_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319852_1320656_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320652_1321447_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321454_1322690_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322703_1323117_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323866_1324817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325438_1327166_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327277_1328636_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328928_1329879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1449274	1501427	4104313	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1449274_1450225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450391_1450745_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450757_1451120_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451161_1451587_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451789_1453046_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453244_1454225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454374_1455616_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455714_1456665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456673_1457369_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460190_1460790_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460800_1462966_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462989_1464774_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464773_1464863_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465557_1465830_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465829_1467896_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467892_1468843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468941_1469892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1470007_1470340_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470336_1471023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1471009_1471969_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1472001_1474371_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474370_1475003_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475104_1476445_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476491_1477847_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478137_1478374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478561_1478879_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479151_1479667_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479937_1480693_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481031_1481238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481245_1481905_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482199_1484404_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484514_1485738_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485860_1486835_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486902_1488096_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488110_1488911_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488907_1490764_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490760_1491366_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491384_1492770_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493495_1494722_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494810_1495593_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495691_1496642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496668_1497442_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497453_1498695_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500476_1501427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1545352	1613439	4104313	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1545352_1545841_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545958_1546537_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546642_1547011_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547109_1548060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548066_1549179_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549865_1551068_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551271_1553932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553944_1557349_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558016_1560242_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560288_1560615_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560665_1561274_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561372_1562323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562392_1563157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1563153_1563690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563856_1564708_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564767_1565394_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565390_1566341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566439_1567552_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567541_1568543_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568648_1570160_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570156_1571461_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571572_1572133_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572400_1572955_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573410_1573626_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573880_1576478_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576474_1577662_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578321_1578936_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1579024_1580146_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580163_1581069_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581961_1582912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583093_1583846_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583914_1584574_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584570_1585299_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585311_1587591_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587615_1587819_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587860_1588493_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588628_1589546_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589542_1590256_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590493_1591264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591268_1591868_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592112_1593603_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593661_1593946_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1594511_1595438_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595574_1596315_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596481_1597858_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598039_1598945_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600596_1602399_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602516_1603167_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603265_1604216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604237_1605458_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605643_1607056_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607119_1608187_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608186_1609674_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609683_1610628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610787_1611486_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611563_1612469_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612488_1613439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1649388	1704979	4104313	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649388_1650339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650397_1651171_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651163_1652720_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652716_1653667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654993_1655596_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655835_1656537_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656530_1657313_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657497_1658448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658546_1659284_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659473_1660232_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660278_1661268_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661445_1662414_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663953_1664922_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664930_1665872_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666345_1667356_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667346_1668861_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668857_1670204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670206_1671241_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671290_1672916_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673468_1674419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674523_1675471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675524_1677339_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677331_1678006_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678135_1681210_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681223_1681523_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681837_1682461_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682704_1683574_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683551_1684496_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684581_1685508_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685620_1686400_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686390_1687587_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687617_1688568_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688789_1689479_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689543_1690299_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690350_1691343_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691352_1692306_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692421_1693384_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694785_1695214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695210_1696161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696454_1697177_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697615_1698803_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698806_1699157_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700906_1701878_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701891_1702605_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702609_1703527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703633_1703930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704028_1704979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	1937743	2007395	4104313	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937743_1940401_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940478_1941681_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941677_1942190_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942312_1942750_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943026_1943977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944075_1945026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945189_1947085_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947198_1947366_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947429_1947666_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1948034_1949186_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950749_1951700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952151_1953153_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953325_1954183_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954179_1955442_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955542_1955917_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1955989_1957177_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957261_1958032_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958145_1958910_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958860_1960162_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960158_1960965_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962709_1963681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963837_1964350_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964508_1965483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966483_1967278_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967303_1968110_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968220_1968811_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968821_1970000_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970102_1970477_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970729_1972061_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972127_1975358_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976848_1977595_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977679_1978141_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978178_1979237_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979199_1981029_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981068_1981641_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983065_1983887_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984205_1985528_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985887_1986523_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986482_1987433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988303_1989176_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989253_1990393_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990751_1992008_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1992013_1992541_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992545_1993364_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993363_1994086_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994107_1994422_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994439_1995588_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995618_1996494_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996490_1997810_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997882_1999079_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999089_2000577_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003171_2004071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004208_2005174_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005272_2006223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006444_2007395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2018891	2147867	4104313	transposase,tRNA,protease	Klosneuvirus(18.75%)	117	NA	NA
WP_005013747.1|2018891_2019842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020979_2021276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021450_2022803_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022945_2023962_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025941_2026955_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2027041_2027947_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028103_2028448_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028605_2029064_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029077_2031294_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031290_2032352_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032380_2033355_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033306_2034125_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034137_2034746_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034920_2035316_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035334_2036774_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036802_2037150_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037168_2038119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038771_2039722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039805_2041623_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041696_2042344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042356_2043286_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043455_2043920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044167_2044848_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044896_2046588_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046603_2047155_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047151_2047523_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047635_2048472_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048482_2049007_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049104_2049284_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049413_2050388_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050518_2050875_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050864_2051740_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051838_2052723_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052744_2054040_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054988_2055639_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055726_2057247_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057504_2059370_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_162268681.1|2060334_2060475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061289_2061649_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061636_2063073_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063069_2063723_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063719_2064913_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065016_2066291_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066287_2067238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2067404_2068379_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2068375_2068519_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2070140_2070803_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2070805_2070982_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2070978_2071917_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2072008_2073499_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2073584_2073737_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2073750_2073990_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2074085_2074829_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2074837_2075362_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2075460_2076384_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2076380_2077142_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2077157_2078243_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2078442_2079393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079491_2080442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080401_2080815_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081099_2081399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081808_2084091_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084556_2084751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2084776_2086807_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086826_2087039_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087316_2087856_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087969_2089265_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089341_2090499_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090682_2091582_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091600_2092905_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092870_2093977_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094064_2094301_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094439_2095510_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095513_2096869_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096895_2098053_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098058_2098697_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098698_2099994_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2100043_2101330_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101345_2101852_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101848_2102997_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103024_2103450_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103772_2106655_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106747_2107503_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108268_2109618_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109716_2110667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110765_2111716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111789_2112263_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112288_2113497_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113493_2114267_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114266_2114890_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115055_2115316_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115619_2116201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116267_2116522_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116508_2119133_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2119204_2120023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2120019_2120625_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2120662_2121796_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2123511_2123886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2123983_2125258_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2125261_2126839_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2127745_2129101_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2129097_2130732_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2130724_2131555_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2131572_2132517_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2132569_2134144_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2134191_2134551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2134543_2134864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2134979_2135912_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2136014_2136971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2137120_2138458_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2138462_2139719_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2139914_2140961_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2141018_2141387_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2141517_2142390_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2142466_2143369_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2144425_2145643_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2146916_2147867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2163145	2227966	4104313	transposase,tRNA,protease	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_010929591.1|2163145_2164096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164666_2164879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164896_2165628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165662_2166304_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166296_2166965_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169177_2169954_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169975_2171133_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171129_2171561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171557_2172355_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172374_2172776_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172842_2173814_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173879_2175103_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175330_2176281_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176404_2178858_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179046_2180351_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180455_2181109_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181111_2182422_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182600_2183179_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183290_2183491_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183836_2184403_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184486_2184690_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184996_2185317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185358_2185640_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185714_2186971_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187353_2187683_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189253_2190075_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190074_2191214_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191220_2192117_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192131_2194039_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194398_2197011_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197063_2199364_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199360_2200569_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200830_2201205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201201_2202152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202250_2204245_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204304_2205270_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205259_2208121_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208123_2208630_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208734_2209943_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209944_2210883_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211044_2211518_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211514_2212465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2212575_2213016_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2213144_2214374_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2214412_2215234_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2215287_2216439_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2216530_2217019_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2219569_2222119_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2222189_2224763_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2225028_2225229_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2225260_2225422_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2225479_2225818_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2225966_2226917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2227015_2227966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2506112	2564356	4104313	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506112_2507063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507542_2508199_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508213_2509881_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509883_2510513_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510724_2511819_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511963_2512776_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512779_2514363_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514533_2515664_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515850_2516927_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517008_2517659_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517673_2519077_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519360_2520179_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520175_2520880_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521779_2522895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522928_2523303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523325_2524483_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524495_2524729_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525363_2528333_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528347_2528557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528708_2529338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529334_2531392_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531448_2532129_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532125_2532686_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532692_2533790_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533942_2534536_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534532_2535825_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535838_2536381_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536390_2537227_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537260_2538322_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538363_2539416_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539431_2539734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539875_2540826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2541004_2542699_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542695_2543781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543828_2544728_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544738_2545383_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546404_2549647_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549657_2550812_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551038_2552001_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552099_2553050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553148_2554099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554108_2554798_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554857_2555295_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555340_2556234_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556281_2557454_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557450_2558605_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558801_2559152_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559141_2559576_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559592_2560543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560690_2561158_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561138_2562296_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562361_2563288_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563405_2564356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2606635	2673135	4104313	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606635_2607586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607955_2608528_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608530_2609541_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609533_2610034_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610044_2610386_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610454_2611189_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611205_2611475_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611497_2612286_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010931363.1|2612332_2613349_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613565_2615008_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615186_2616806_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616926_2618747_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618825_2620358_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620391_2622038_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622107_2623130_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623147_2624281_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624283_2624973_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624972_2625758_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625801_2626566_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626604_2628026_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628091_2628796_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628843_2629263_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629275_2629683_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629866_2630577_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630703_2630994_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631011_2631494_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635999_2637154_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637459_2638476_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638722_2639511_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639577_2640258_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640254_2641025_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641123_2642074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642129_2643047_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643057_2644236_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644255_2645251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646839_2647448_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647435_2648476_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648493_2649456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649452_2650646_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650642_2651440_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651465_2652452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652470_2654510_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654711_2655392_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655405_2656317_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656313_2656892_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657030_2657936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657943_2661363_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661350_2663951_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664906_2665539_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665932_2666691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666687_2667890_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668077_2669028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669935_2671081_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671067_2671823_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671939_2672119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672184_2673135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2835700	2901284	4104313	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2835700_2836651_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836749_2837700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2837902_2838892_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838975_2839329_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839406_2840015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841688_2842267_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842291_2843245_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843284_2844202_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844323_2845250_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845257_2846004_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846330_2847272_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847498_2849196_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849630_2851052_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851205_2851985_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852109_2852988_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853093_2854218_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854263_2855226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855218_2856073_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856180_2856591_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856587_2857538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857636_2858518_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858595_2859975_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860013_2860859_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860874_2861189_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861221_2861758_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861930_2862506_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862608_2863346_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863413_2865051_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865158_2865914_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865901_2866864_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866971_2867766_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867827_2869903_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870067_2872443_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872523_2873879_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875357_2876080_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876134_2877118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877247_2878198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878194_2879097_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879184_2879943_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879955_2881047_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881144_2882572_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882801_2884016_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884061_2886932_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889342_2889831_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889956_2892653_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892807_2895090_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895254_2895887_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895985_2896936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896982_2897537_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897604_2898450_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898519_2899488_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145926266.1|2899487_2901284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2918854	2979881	4104313	transposase,tRNA,holin	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2918854_2920375_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920417_2920720_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920716_2921349_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921427_2923293_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923289_2924084_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924112_2925228_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926132_2927011_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927010_2927835_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|2928002_2928953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929165_2932015_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931996_2932725_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932865_2934329_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934325_2934697_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934714_2936028_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936064_2936523_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936635_2937586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937582_2938596_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938735_2939722_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940080_2940788_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941368_2942319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942470_2943073_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943091_2943724_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943768_2944020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943961_2945848_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945866_2946709_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946705_2948064_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948284_2949079_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949309_2950803_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951038_2953120_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953314_2954355_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954489_2955506_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955527_2956385_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956429_2957206_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957573_2958524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958550_2959015_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960221_2962510_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962626_2963499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963541_2964696_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964730_2965561_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965644_2967189_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967231_2967591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967592_2968006_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968046_2968364_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968448_2969165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969428_2970850_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970916_2973664_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973996_2975013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975348_2975990_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976080_2977517_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977674_2978748_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978744_2979881_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 23
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	2983634	3056151	4104313	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2983634_2984651_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985588_2987016_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987012_2988035_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988024_2988498_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988638_2989526_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989522_2991166_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991162_2992170_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993000_2994017_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994116_2994749_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994757_2995147_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995199_2996252_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997115_2998822_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998895_2999396_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999410_3001468_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001494_3001788_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001889_3002837_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002849_3003725_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003845_3004406_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004440_3004764_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005199_3005937_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006235_3007186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007429_3007693_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007766_3008048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008064_3008925_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008921_3009257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009310_3009961_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011641_3012586_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012631_3012949_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012951_3013890_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014067_3014553_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014571_3015120_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015151_3015304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3016633_3017275_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017429_3019778_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019774_3020713_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020738_3021929_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021925_3022699_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022728_3023922_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024039_3025050_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025067_3027104_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027298_3028039_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028137_3029088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029130_3030306_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030527_3032318_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032330_3033992_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034004_3036710_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037002_3038757_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038753_3039380_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039376_3040228_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040357_3042418_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042604_3043219_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043364_3043616_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043685_3045068_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045064_3048244_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049051_3049969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050020_3050752_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050811_3051384_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052892_3053909_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054046_3055096_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055200_3056151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	3075551	3140491	4104313	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3075551_3076502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076600_3077185_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077219_3078209_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078205_3079147_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079143_3080364_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080406_3080721_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080912_3081272_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081273_3082989_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083176_3083848_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083862_3085191_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085187_3086087_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086173_3087259_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087251_3088382_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088384_3091066_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091436_3092018_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092143_3092869_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092865_3093543_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093758_3094940_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095712_3095895_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095924_3096875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097004_3097397_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097673_3098585_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098709_3099684_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099680_3100631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100729_3101815_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101912_3102323_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102938_3104852_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104987_3107600_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107601_3108336_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108499_3109681_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109677_3109890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109886_3110867_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110912_3111740_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111889_3113704_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113758_3114142_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114138_3115089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115201_3115453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115646_3115862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115958_3117077_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117196_3117409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117568_3117790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117842_3118793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119969_3121340_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121372_3122164_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122176_3123232_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123257_3124133_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124238_3124487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124521_3125976_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125972_3126494_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126522_3127875_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128098_3130987_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133131_3134433_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134447_3135164_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135445_3136126_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3136653_3137313_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137711_3139544_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139540_3140491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	3232114	3301117	4104313	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232114_3233065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233061_3234081_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234090_3236799_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236946_3237603_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237701_3238652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238799_3239693_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239892_3241587_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241621_3242548_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242616_3243714_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243732_3244596_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244607_3245390_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245386_3246505_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246501_3248034_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248074_3249082_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249226_3249949_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249964_3250987_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251303_3252038_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252122_3253868_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253864_3254617_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254661_3255618_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255706_3256273_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256280_3257141_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257170_3257899_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257930_3258614_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259451_3260366_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260430_3261339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261429_3262854_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262855_3264178_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264174_3266313_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266390_3271511_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271611_3271920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271989_3272547_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272562_3274044_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274098_3275952_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276214_3277552_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277586_3279584_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279601_3281650_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281780_3282647_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282915_3283881_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283995_3285144_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285568_3285880_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285913_3286174_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286323_3287457_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287527_3288664_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288829_3289624_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289686_3290130_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290245_3291196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291318_3291726_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291798_3293994_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294215_3295166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295125_3295650_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295781_3296753_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296872_3299317_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299332_3299923_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300166_3301117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	3316563	3416676	4104313	protease,terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316563_3317514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318245_3318623_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318607_3319309_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319452_3320145_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320144_3321248_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321357_3323730_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323726_3325286_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325310_3326108_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326139_3327285_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327389_3328832_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328834_3330064_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332201_3333152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334281_3334839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334814_3335165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335333_3336128_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336124_3337174_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337173_3337863_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337949_3338447_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338478_3339795_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339811_3340786_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340822_3341281_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341280_3341961_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341963_3342392_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342444_3344175_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344240_3344813_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344793_3345480_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345835_3346507_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346835_3347057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347056_3347338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347334_3347850_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347849_3348401_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348379_3348622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348626_3349439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349438_3349702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349742_3349940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349920_3350337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350341_3354298_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354290_3354680_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354676_3355210_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355277_3355637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355646_3358259_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358284_3358575_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358592_3358922_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358931_3359450_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359704_3360205_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360212_3360635_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360631_3361030_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361026_3361422_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361421_3361610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361623_3362106_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362168_3362420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363094_3364045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364473_3365076_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365198_3365441_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365446_3366502_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366530_3367949_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367951_3369229_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369215_3369701_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370340_3371291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371547_3372237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372229_3372481_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373035_3373647_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373718_3373925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374176_3375127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375225_3376299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376466_3377261_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377300_3377825_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377817_3379560_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379769_3380528_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380530_3381238_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381254_3382136_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382146_3382905_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382873_3383629_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383698_3385117_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385138_3385789_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385922_3386258_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386346_3387297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387373_3389194_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389198_3390272_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390394_3391363_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391436_3392348_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392366_3392939_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393019_3393568_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393567_3395157_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395226_3395466_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395506_3396532_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396597_3397779_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397875_3398328_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398337_3399678_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399994_3401032_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401413_3401773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401856_3402798_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077085067.1|3402872_3403823_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404116_3405211_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405301_3406174_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406195_3407035_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407110_3408628_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408724_3409825_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409841_3410264_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410286_3410499_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410545_3411466_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411648_3412398_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412400_3412730_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413017_3414370_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414381_3414765_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414826_3415627_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415725_3416676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011171	Bordetella pertussis strain E150 chromosome, complete genome	4104313	4003381	4068293	4104313	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4003381_4003867_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003955_4004093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004085_4005066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005332_4006142_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006181_4006862_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006855_4007314_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007325_4007688_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007770_4008454_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008509_4008818_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008836_4009151_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009147_4011622_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011629_4013021_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013017_4013203_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013181_4013883_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013879_4014701_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014681_4015806_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015798_4016818_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4017023_4017914_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018158_4018950_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019032_4019407_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019384_4020794_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020786_4022169_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022503_4024108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024185_4025157_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025167_4026094_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026484_4027435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027604_4028831_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029030_4029897_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029889_4030852_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030952_4031903_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032001_4032952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033050_4034001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033997_4035491_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035487_4038595_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038591_4041660_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041656_4042907_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043087_4043840_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043881_4044526_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044534_4045515_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045614_4046358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046440_4046788_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046885_4047728_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047772_4048660_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048686_4048875_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048972_4050430_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050416_4051943_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051961_4052429_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052428_4053451_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053571_4054312_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054366_4055467_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055468_4056659_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056778_4057795_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058113_4058785_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058781_4059690_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059901_4060549_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064409_4065477_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065487_4066297_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066386_4067160_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067342_4068293_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
