The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	27282	70036	4101097	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	77634	136108	4101097	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	164894	225405	4101097	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	233337	286925	4101097	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	468502	585348	4101097	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|468502_469453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470175_471450_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471536_472619_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472629_473442_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473478_473805_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473809_474370_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474610_475603_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475621_476617_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476632_478009_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478001_480383_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480399_480789_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480915_481146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481250_482201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482299_483250_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483246_484119_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485049_486336_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486389_487316_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487334_487790_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|488641_489433_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489464_490085_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490081_490711_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490723_491332_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491328_492318_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492423_493638_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495589_496540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497973_499260_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|499425_499734_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|499734_500400_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|500440_502231_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502343_503204_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|503200_504406_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504402_505287_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506803_507238_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507200_508199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508310_509456_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509530_510859_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510892_511483_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511772_512567_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513736_514471_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514477_515344_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515351_517127_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517169_517667_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931070.1|517963_518914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519012_519963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520303_521254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523577_524726_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|524770_525433_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525546_526539_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526535_527273_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|527352_528174_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528262_529126_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529252_529489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531463_532498_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|532556_533534_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533541_534462_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534458_536159_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536161_537067_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537110_538244_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538372_539323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539421_541491_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541533_543636_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543942_545019_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545094_545979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546161_546584_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546593_547994_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548036_548942_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549040_550582_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550616_551156_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551168_551639_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551776_552019_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552135_553017_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553089_553410_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|554261_555212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556535_557312_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557346_559119_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559120_560023_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560147_560507_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560538_561501_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561599_562550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562562_563498_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563557_564397_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564393_565563_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565559_566849_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566891_567266_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|567371_568109_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568116_568821_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569084_570605_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570660_571224_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571242_572274_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572270_573059_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|573079_573238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|573234_574224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575980_576931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578153_579056_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579057_579912_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579958_581068_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581078_581597_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581626_582259_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582330_582990_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|582986_584207_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584475_585348_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	589762	653595	4101097	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|589762_590779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591050_591677_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|591732_592860_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_077068975.1|592865_598583_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	7.7e-196
WP_003814277.1|599150_600095_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600283_601219_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601336_602908_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602987_604196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604693_605611_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607971_608193_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608523_609540_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609624_609876_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609879_610695_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610807_611686_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611797_613561_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613676_615017_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616086_617511_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617510_618212_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619716_620667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620762_621734_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621738_622419_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622556_622949_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623056_624073_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624312_625098_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625192_626602_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626612_627413_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627433_628204_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|628246_628714_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628710_629661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|631609_632488_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|633414_636393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|636746_637697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|637693_638782_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|638817_639681_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|640820_641210_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|641213_641996_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|642029_642815_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|643090_644230_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|644226_645018_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|645014_645764_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|645760_646633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|646632_647634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|647630_648794_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|648819_649503_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|649456_650791_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|650783_651878_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|652644_653595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	672506	749815	4101097	tRNA,transposase,integrase,protease	Bacillus_phage(20.0%)	57	719643:719661	739531:739549
WP_023995489.1|672506_673457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|673555_675031_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|676618_677506_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|677508_678450_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|678495_680061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|681838_683164_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|683346_684804_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|684767_685265_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|685295_686267_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|686319_686757_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|686880_687549_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|688277_689381_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|689483_690761_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|690772_691798_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|691799_693170_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|693170_694307_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|694353_696279_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|696275_697397_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|697393_698548_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|698544_699675_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|699682_701248_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|701254_702637_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|702915_703527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|703618_705034_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|705051_705762_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|705758_707081_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|707160_709122_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|709247_710561_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|710669_711968_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|712150_713059_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|713068_713278_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|713289_714969_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|715070_716024_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|716114_716942_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|716940_718827_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|718823_719423_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|719471_720371_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719643:719661	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|720579_721530_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|721652_722267_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|722395_722992_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|722988_723771_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|723843_724935_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|725214_726342_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|726683_727730_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|727877_730997_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|730998_733950_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|733965_735177_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|735360_736311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|736327_736822_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|736825_737083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|737626_738538_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|738619_738904_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|739687_740638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
739531:739549	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|741056_743621_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|743665_745519_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|745851_747423_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|748864_749815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	995750	1098144	4101097	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|995750_996866_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|996966_997785_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|997882_998494_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|998653_1000030_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1000092_1000551_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1000635_1001331_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1001392_1001674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1002236_1002989_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1003033_1004110_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1004106_1005057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005159_1005822_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005916_1006087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006439_1007441_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007443_1008640_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008660_1009464_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1009544_1009841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009871_1010435_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010475_1011333_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011340_1012090_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012111_1012984_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1013012_1013792_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013825_1014623_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017277_1017670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017663_1018524_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018527_1019490_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020266_1020956_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021816_1022767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023116_1023986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024056_1024752_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024741_1025251_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025247_1026468_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026415_1027318_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028204_1029491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029529_1030903_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030941_1031643_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031941_1032931_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033031_1033493_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033508_1034057_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1034198_1035674_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035779_1036871_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036874_1037657_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037666_1038455_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039580_1040015_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1040011_1041022_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041065_1041992_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042278_1042647_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1042863_1043814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043858_1046285_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046333_1047026_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047098_1048298_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048315_1049221_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049336_1050266_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050291_1051638_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1051665_1052415_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1052428_1053211_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053403_1054354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054415_1055525_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056037_1056874_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1056943_1057909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057905_1058856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1059241_1059784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060819_1061770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1062011_1062380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062425_1063550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1064684_1065437_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065528_1066149_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1066252_1067203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067199_1069308_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069452_1070112_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070143_1070608_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070883_1071069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071120_1071873_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071879_1073142_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073183_1074422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075499_1076627_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076637_1077465_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077451_1078318_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079684_1080089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080180_1081131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1081501_1082413_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082427_1083138_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083134_1084379_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084380_1084815_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084843_1085149_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085247_1086198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1086254_1087409_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087483_1088434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088965_1089763_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089810_1090464_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090420_1091509_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091673_1093899_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096176_1097073_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1097193_1098144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	1128530	1199502	4101097	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1128530_1129481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129537_1130650_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133033_1133984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134574_1135351_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135468_1135732_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135832_1136837_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137037_1138639_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138664_1139423_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139514_1140171_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140261_1141026_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141035_1141224_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141279_1142323_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142319_1142733_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142729_1143350_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143630_1144581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144748_1146140_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146212_1146791_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146907_1148305_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148420_1149626_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149725_1150244_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150338_1150584_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150811_1151126_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1151215_1156405_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156401_1158570_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158625_1160941_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160945_1162265_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162283_1163957_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163961_1164630_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164786_1168608_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1168938_1169889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169910_1171056_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171204_1172134_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172130_1173219_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173215_1174019_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1174015_1174747_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174804_1176094_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176190_1176793_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181347_1181686_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182393_1182660_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184366_1185317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185313_1186645_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187905_1189906_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189898_1190540_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190536_1190944_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190940_1191741_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191815_1192520_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192551_1193346_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193342_1194293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1194391_1195342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195440_1195875_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195957_1198294_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198485_1199502_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	1246896	1327771	4101097	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1246896_1247847_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247843_1248794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249054_1250083_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250162_1251461_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251457_1252039_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252351_1256398_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256638_1264300_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264296_1265247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266386_1266860_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266999_1267620_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1267755_1268556_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268610_1269702_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1269723_1270167_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270195_1270828_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270938_1271355_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271347_1272040_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272146_1272521_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1272597_1273407_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273502_1274447_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274485_1275457_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275547_1275985_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276043_1276925_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277928_1278789_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278821_1280204_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280200_1281220_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281592_1282087_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282094_1282835_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282915_1284520_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284559_1285348_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1286550_1287639_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1288519_1289332_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289344_1289653_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289770_1291501_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1291502_1292648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1292777_1293446_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293567_1294035_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294170_1295553_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295549_1296674_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296670_1299307_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1299722_1300673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304419_1305031_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305253_1306714_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306810_1308403_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308756_1309014_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309015_1310356_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310451_1311141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311153_1312584_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314308_1315130_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315140_1316712_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316740_1317718_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317744_1318548_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318544_1319339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319346_1320582_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1320574_1321009_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321758_1322709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1323330_1325058_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1325169_1326528_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1326820_1327771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	1447166	1500346	4101097	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1447166_1448117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1448283_1448637_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448649_1449012_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449053_1449479_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449681_1450938_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451136_1452117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452266_1453508_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1453606_1454557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454565_1455261_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458082_1458682_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458692_1460858_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460881_1462666_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462665_1462755_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463449_1463722_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463721_1465788_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465784_1466735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1466850_1467183_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1467179_1467866_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1467852_1468812_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1468853_1471214_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1471213_1471846_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1471947_1473288_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1473334_1474690_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1474815_1475460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1475404_1475722_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1475994_1476510_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1476603_1476765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1476780_1477536_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1477874_1478081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1478088_1478748_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1479042_1481247_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1481357_1482581_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1482703_1483678_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1483745_1484939_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1484953_1485754_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1485750_1487607_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1487603_1488209_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1488227_1489613_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1490338_1491565_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1491653_1492436_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1492534_1493485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1493511_1494285_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1494296_1495538_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1497319_1498270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1498301_1499399_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1499395_1500346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	1542195	1610225	4101097	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1542195_1542684_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1542801_1543380_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1543485_1543854_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1543952_1544903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1544909_1546022_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1546708_1547911_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1547946_1548093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1548114_1550775_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1550787_1554192_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1554803_1557029_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1557075_1557402_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1557452_1558061_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1558159_1559110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1559179_1559944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1559940_1560540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1560643_1561495_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1561554_1562181_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1562177_1563128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1563226_1564339_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1564328_1565330_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1565435_1566947_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1566943_1568248_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1568359_1568920_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1569187_1569742_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1570197_1570413_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1570667_1573265_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1573261_1574449_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1575107_1575722_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1575810_1576938_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1576949_1577855_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010929577.1|1578747_1579698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1579879_1580632_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1580700_1581360_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1581356_1582085_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1582097_1584377_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1584401_1584605_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1584646_1585279_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1585414_1586332_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1586328_1587042_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1587279_1588050_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1588054_1588654_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1588898_1590389_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1590447_1590732_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1590869_1591025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1591297_1592224_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1592360_1593101_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1593267_1594644_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1594825_1595731_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1597382_1599185_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1599311_1599953_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1600051_1601002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1601023_1602244_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1602429_1603842_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1603905_1604973_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1604972_1606460_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1606469_1607414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1607573_1608272_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1608349_1609255_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1609274_1610225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	1646174	1701765	4101097	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1646174_1647125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1647183_1647957_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1647949_1649506_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1649502_1650453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1651779_1652382_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1652621_1653323_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1653316_1654099_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1654283_1655234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1655332_1656070_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1656259_1657018_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1657064_1658054_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1658231_1659200_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1660739_1661708_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1661716_1662658_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1663131_1664142_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1664132_1665647_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1665643_1666990_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1666992_1668027_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1668076_1669702_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1670254_1671205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1671309_1672257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1672310_1674125_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1674117_1674792_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1674921_1677996_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1678009_1678309_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1678623_1679247_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1679490_1680360_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1680337_1681282_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1681367_1682294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1682406_1683186_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1683176_1684373_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1684403_1685354_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1685575_1686265_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1686329_1687085_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1687136_1688129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1688138_1689092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1689207_1690170_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1691571_1692000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1691996_1692947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1693240_1693978_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1694401_1695589_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1695592_1695973_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1697692_1698664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1698677_1699391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1699395_1700313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1700419_1700716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1700814_1701765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2021934	2079213	4101097	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|2021934_2022885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2022983_2025584_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2025690_2026695_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2026803_2028144_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2028184_2029213_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2029408_2029954_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2029950_2030511_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2030609_2031560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2031597_2032185_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2032202_2032586_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2033945_2035238_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2035372_2036413_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2036510_2037527_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2037794_2038442_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2038567_2039326_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2039310_2040090_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2040107_2040992_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2040988_2041768_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2041872_2042472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2042760_2043513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2043631_2045032_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2045055_2045454_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2045629_2045830_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2045968_2046697_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2046830_2048246_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2048249_2049113_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2049125_2049875_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2050057_2052073_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2052054_2052723_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2053497_2054448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2054596_2054935_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2054992_2055154_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2055185_2055386_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2055651_2058225_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2058295_2060845_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2063395_2063884_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2063975_2065127_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2065180_2066002_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2066040_2067270_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2067398_2067839_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2067949_2068900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2068896_2069370_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2069531_2070470_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2070471_2071680_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2071784_2072291_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2072293_2075155_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2075144_2076110_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2076169_2078164_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2078262_2079213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2130462	2189732	4101097	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2130462_2131413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2131537_2132347_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2132547_2133498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2134771_2135989_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2137045_2137948_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2138024_2138897_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2139027_2139396_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2139453_2140500_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2140695_2141952_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2141956_2143294_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2143443_2144400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2144502_2145435_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2145550_2145871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2145863_2146223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2146270_2147845_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2147897_2148842_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2148859_2149690_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2149682_2151317_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2151313_2152669_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2153575_2155153_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2155156_2156431_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2156528_2156903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2158618_2159752_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2159789_2160395_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2160391_2161210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2161281_2163906_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2163892_2164147_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2164213_2164795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2165098_2165359_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2165524_2166148_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2166147_2166921_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2166917_2168126_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2168151_2168625_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2168698_2169649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2169747_2170698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2170796_2172146_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2172911_2173667_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2173759_2176642_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2176964_2177390_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2177417_2178566_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2178562_2179069_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2179075_2180371_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2180429_2181716_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2181717_2182356_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2182358_2183519_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2183545_2184901_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2184904_2185975_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2186113_2186350_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2186437_2187544_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2187509_2188814_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2188832_2189732_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2199972	2244295	4101097	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|2199972_2200923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2201021_2201972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2202171_2203257_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2203272_2204034_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2204030_2204990_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2205052_2205553_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2205585_2206329_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2206424_2206664_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2206677_2206830_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2206915_2208406_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2208497_2209436_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2209432_2209609_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2209611_2210274_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2211895_2212039_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2212035_2213010_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2213176_2214127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2214123_2215398_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2215501_2216695_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2216691_2217345_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2217341_2218778_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2218765_2219125_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2219939_2220080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2220097_2221048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2222093_2223959_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2224216_2225737_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2225824_2226475_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2227423_2228719_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2228740_2229625_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2229723_2230599_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2230588_2230945_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2231075_2232050_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2232179_2232359_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2232456_2232981_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2232991_2233828_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2233940_2234312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2234308_2234860_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2234875_2236567_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2236615_2237296_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2237543_2238008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2238177_2239107_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2239119_2239767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2239840_2241658_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2241741_2242692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2243344_2244295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2274068	2338437	4101097	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2274068_2275019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2275240_2276191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2276289_2277255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2277392_2278292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2280886_2282374_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2282384_2283581_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2283653_2284973_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2284969_2285845_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2285875_2287024_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2287041_2287356_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2287377_2288100_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2288099_2288918_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2288922_2289450_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2289455_2290712_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2291070_2292210_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2292287_2293160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2294030_2294981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2294940_2295576_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2295935_2297258_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2297576_2298398_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2299822_2300395_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2300434_2302264_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2302226_2303285_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2303322_2303784_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2303868_2304615_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2306105_2309336_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2309402_2310734_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2310986_2311361_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2311463_2312642_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2312652_2313243_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2313353_2314160_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2314185_2314980_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2315980_2316955_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2317113_2317626_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2317782_2318754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2320498_2321305_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2321301_2322603_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2322553_2323318_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2323431_2324202_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2324286_2325474_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2325546_2325921_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2326021_2327284_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2327280_2328138_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2328310_2329312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2329763_2330714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2332229_2333429_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2333797_2334034_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2334097_2334265_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2334378_2336184_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2336437_2337388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2337486_2338437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2502898	2561142	4101097	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2502898_2503849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2504328_2504985_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2504999_2506667_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2506669_2507299_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2507510_2508605_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2508749_2509562_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2509565_2511269_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2511319_2512450_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2512636_2513713_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2513794_2514445_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2514459_2515863_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2516146_2516965_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2516961_2517666_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2518565_2519681_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2519714_2520089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2520111_2521269_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2521281_2521515_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2522149_2525119_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2525133_2525343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2525494_2526124_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2526120_2528211_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2528234_2528915_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2528911_2529472_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2529478_2530576_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2530728_2531322_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2531318_2532611_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2532624_2533167_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2533176_2534013_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2534046_2535108_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2535149_2536202_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2536217_2536520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2536661_2537612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2537790_2539485_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2539481_2540567_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2540614_2541514_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2541524_2542169_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2543190_2546433_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2546443_2547598_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2547824_2548787_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2548885_2549836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2549934_2550885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2550894_2551584_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2551643_2552081_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2552126_2553020_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2553067_2554240_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2554236_2555391_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2555587_2555938_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2555927_2556362_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2556378_2557329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2557476_2557944_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2557924_2559082_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2559147_2560074_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2560191_2561142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2603422	2669922	4101097	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2603422_2604373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2604742_2605315_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2605317_2606328_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2606320_2606821_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2606831_2607173_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2607184_2607976_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2607992_2608262_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2608284_2609073_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2609119_2610136_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2610352_2611795_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2611973_2613593_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2613713_2615534_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2615612_2617145_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2617178_2618825_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2618894_2619917_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2619934_2621068_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2621070_2621760_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2621759_2622545_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2622588_2623353_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2623391_2624813_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2624878_2625583_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2625630_2626050_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2626062_2626470_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2626653_2627364_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2627490_2627781_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2627798_2628281_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2632786_2633941_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2634246_2635263_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2635509_2636298_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2636364_2637045_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2637041_2637812_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2637910_2638861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2638916_2639834_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2639844_2641023_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2641042_2642038_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2643626_2644235_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2644222_2645263_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2645280_2646243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2646239_2647433_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2647429_2648227_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2648252_2649239_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2649257_2651297_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2651498_2652179_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2652192_2653104_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2653100_2653679_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2653817_2654723_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2654730_2658150_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2658137_2660738_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2661693_2662326_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2662719_2663478_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2663474_2664677_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2664864_2665815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2666722_2667868_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2667854_2668610_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2668726_2668906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2668971_2669922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2869310	2942633	4101097	tRNA,transposase,protease	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2869310_2870666_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2872144_2872867_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2872921_2873905_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2874034_2874985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2874981_2875884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2875971_2876730_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2876742_2877834_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2877931_2879359_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2879588_2880803_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2880848_2883719_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2886129_2886618_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2886743_2889440_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2889594_2891877_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2892048_2892672_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2892770_2893721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2893767_2894322_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2894389_2895235_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2895304_2896273_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2896272_2897136_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2899968_2903895_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2904630_2907861_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2908142_2908970_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2909003_2909699_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2909691_2910972_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2910981_2911959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2911940_2913641_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2913743_2914847_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2914877_2915633_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2915639_2917160_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2917202_2917505_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2917501_2918134_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2918212_2920078_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2920074_2920869_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2920897_2922013_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2922917_2923796_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2923795_2924620_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2924787_2925738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2925950_2928800_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2928781_2929510_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2929650_2931114_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2931110_2931482_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2931499_2932813_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2932849_2933308_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2933420_2934371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2934367_2935381_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2935520_2936507_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2936865_2937573_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938153_2939104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2939255_2939858_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2939876_2940509_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2940553_2940805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2940746_2942633_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	2954358	3003971	4101097	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2954358_2955309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2955335_2955800_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2957006_2959295_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2959411_2960284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2960326_2961481_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2961515_2962346_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2962429_2963974_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2964016_2964376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2964377_2964791_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2964831_2965149_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2965233_2965950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2966213_2967635_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2967701_2970449_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2970781_2971798_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2972133_2972775_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2972865_2974302_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2974459_2975533_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2975529_2976666_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2976810_2977155_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2977221_2979102_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2979151_2980087_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2980419_2981436_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2982373_2983801_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2983797_2984820_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2984809_2985283_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2985423_2986311_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2986307_2987951_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2987947_2988997_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2989785_2990802_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2990901_2991534_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2991542_2991932_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2991984_2993037_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2993900_2995607_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2995680_2996181_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2996195_2998253_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2998279_2998573_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2998674_2999622_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2999634_3000510_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3000630_3001191_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3001225_3001549_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3001984_3002722_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3003020_3003971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	3024922	3097416	4101097	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3024922_3025873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3025915_3027091_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3027312_3029103_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3029115_3030777_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3030789_3033495_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3033787_3035542_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3035538_3036165_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3036161_3037013_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3037088_3039203_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3039389_3040004_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3040149_3040401_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3040470_3041853_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3041849_3045029_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3045836_3046754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3046805_3047537_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3047596_3048169_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3049677_3050694_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3050831_3051881_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3051985_3052936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3053031_3053757_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3053967_3054348_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3054653_3055526_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3055533_3055914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3056067_3057342_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3058829_3059738_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3060535_3061600_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3063436_3064438_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3064660_3065302_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3065384_3067211_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3067454_3068384_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3068383_3069133_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3069204_3070119_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3070138_3071284_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3071344_3072256_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3072336_3073287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3073385_3073970_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3074004_3074994_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3074990_3075932_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3075928_3077149_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3077191_3077506_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3077697_3078057_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3078058_3079774_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3079961_3080633_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3080647_3081976_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3081972_3082872_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3082958_3084044_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3084036_3085170_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3085169_3087851_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3088221_3088803_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3088928_3089654_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3089650_3090328_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3090543_3091725_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3092497_3092680_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3092709_3093660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3093789_3094182_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3094458_3095370_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3095494_3096469_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3096465_3097416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	3110923	3164441	4101097	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3110923_3111874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3111986_3112238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3112743_3113862_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3113981_3114194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3114353_3114575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3114627_3115578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3116754_3118125_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3118157_3118949_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3118961_3120017_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3120042_3120918_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3121023_3121272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3121306_3122761_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3122757_3123279_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3123307_3124660_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3124883_3127772_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3129916_3131218_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3131232_3131949_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3132230_3132911_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3132922_3133090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3133198_3133345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3133438_3134098_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3134496_3136329_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3136325_3137276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3138439_3140155_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3140165_3140657_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3140729_3141746_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3141913_3142693_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3142711_3143239_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3143532_3143802_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3143892_3146052_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3146172_3146892_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3146888_3147839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3147979_3149197_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3149190_3149802_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3150435_3151413_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3151556_3152303_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3152324_3152771_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3153558_3155790_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3155812_3156613_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_047122792.1|3156894_3158127_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3158237_3159227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3159257_3160646_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3162244_3163228_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3163424_3164441_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	3228899	3302061	4101097	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3228899_3229850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3229846_3230866_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3230875_3233584_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3233731_3234388_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3234486_3235437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3235584_3236478_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3236677_3238372_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3238406_3239333_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3239401_3240499_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3240517_3241381_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3241392_3242175_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3242171_3243290_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3243286_3244819_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3244859_3245867_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3246011_3246734_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3246749_3247772_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3248088_3248823_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3248907_3250653_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3250649_3251402_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3251446_3252403_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3252491_3253058_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3253065_3253926_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3253955_3254684_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3254715_3255399_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3256236_3257151_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3257215_3258124_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3258214_3259639_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3259640_3260963_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3260959_3263098_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3263175_3268296_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3268396_3268705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3268774_3269332_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3269347_3270829_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3272999_3274337_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3274371_3276369_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3276386_3278435_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3278565_3279432_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3279700_3280666_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3280780_3281929_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3282353_3282665_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3282698_3282959_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3283108_3284242_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3284312_3285449_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3285614_3286409_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3286471_3286915_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3287030_3287981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3288082_3288511_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3288583_3290779_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3291000_3291951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3291910_3292435_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3292566_3293538_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3293657_3296102_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3296117_3296708_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3296951_3297902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3298059_3299325_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3299358_3300456_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3301110_3302061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	3313348	3413461	4101097	protease,transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3313348_3314299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3315030_3315408_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3315392_3316094_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3316237_3316930_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3316929_3318033_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3318142_3320515_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3320511_3322071_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3322095_3322893_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3322924_3324070_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3324174_3325617_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3325619_3326849_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3328986_3329937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3331066_3331624_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3331599_3331950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3332118_3332913_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3332909_3333959_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3333958_3334648_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3334734_3335232_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3335263_3336580_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3336596_3337571_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3337607_3338066_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3338065_3338746_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3338748_3339177_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3339229_3340960_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3341025_3341598_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3341578_3342265_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3342620_3343292_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3343620_3343842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3343841_3344123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3344119_3344635_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3344634_3345186_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3345164_3345407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3345411_3346224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3346223_3346487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3346527_3346725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3346705_3347122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3347126_3351083_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3351075_3351465_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3351461_3351995_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3352062_3352422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3352431_3355044_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3355069_3355360_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3355377_3355707_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3355716_3356235_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3356489_3356990_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3356997_3357420_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3357416_3357815_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3357811_3358207_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3358206_3358407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3358408_3358891_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3358953_3359205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3359879_3360830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3361258_3361861_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3361983_3362226_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3362231_3363287_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3363315_3364734_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3364736_3366014_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3366000_3366486_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3367125_3368076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3368332_3369022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3369014_3369266_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3369820_3370432_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3370503_3370710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3370961_3371912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3372010_3373084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3373251_3374046_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3374085_3374610_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3374602_3376345_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3376554_3377313_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3377315_3378023_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3378039_3378921_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3378931_3379690_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3379658_3380414_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3380483_3381902_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3381923_3382574_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3382707_3383043_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3383131_3384082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3384158_3385979_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3385983_3387057_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3387179_3388148_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3388221_3389133_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3389151_3389724_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3389804_3390353_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3390352_3391942_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3392011_3392251_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3392291_3393317_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3393382_3394564_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3394660_3395113_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3395122_3396463_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3396779_3397817_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3398198_3398558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3398641_3399583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929851.1|3399657_3400608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3400901_3401996_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3402077_3402959_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3402980_3403820_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3403895_3405413_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3405509_3406610_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3406626_3407049_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3407071_3407284_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3407330_3408251_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3408433_3409183_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3409185_3409515_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3409721_3411155_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3411166_3411550_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3411611_3412412_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3412510_3413461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011169	Bordetella pertussis strain D521 chromosome, complete genome	4101097	4023268	4076700	4101097	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4023268_4024219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024388_4025615_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025814_4026681_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026673_4027636_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027736_4028687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028785_4029736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029834_4030785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030781_4032275_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032271_4035379_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035375_4038444_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038440_4039691_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039871_4040633_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040665_4041316_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041318_4042158_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042398_4043142_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4043224_4043572_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043669_4044512_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044556_4045444_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045470_4045659_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045756_4047214_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047200_4048727_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048745_4049213_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4049212_4050235_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4050355_4051075_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4051150_4052251_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052252_4053443_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053562_4054579_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054897_4055569_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055565_4056474_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056685_4057333_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061184_4062261_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062271_4063081_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063170_4063944_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4064126_4065077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4064965_4065988_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4065977_4067132_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4067171_4068584_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4068708_4069575_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4069576_4070401_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4070397_4071159_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4071239_4071926_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4072099_4073107_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4073103_4073883_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4073940_4075203_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4075749_4076700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
