The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	27282	70036	4105364	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	77634	136108	4105364	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	164893	219510	4105364	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	225502	289022	4105364	tRNA,protease,transposase	Bacillus_phage(25.0%)	55	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|288071_289022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	392955	450464	4105364	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|392955_393906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|394042_394960_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394956_395205_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395201_396407_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396479_397475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397497_398718_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398714_399359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|401089_401899_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|402203_403157_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|403255_404239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404165_404867_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404915_405686_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405682_406861_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407028_408735_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408731_409628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409668_411258_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|411307_412300_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412368_412968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|413428_414409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414484_415435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|415523_416438_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|416434_417094_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|417183_418107_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|418112_418568_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|418564_419668_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|419623_419896_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|419855_421475_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|421471_422530_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|422659_423154_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|423246_424224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|424419_425625_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425621_427133_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|427148_428462_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428652_428832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|429241_429976_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010930363.1|432420_433371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|433502_433901_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|434311_434782_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|434870_435215_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|435314_436715_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|438503_439022_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|439132_439888_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|440083_441316_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|441308_442094_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|442160_443132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|443142_444120_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|444245_445418_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|445444_446473_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|446538_447732_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|449513_450464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	592518	653708	4105364	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|592518_593469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|593965_594835_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|594831_595653_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|595851_596343_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|596361_597435_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|597481_598585_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|598660_599281_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|599301_599811_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|599865_600117_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|600180_601314_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|601321_601708_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|601704_604224_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|604652_604991_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|604987_605494_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|605555_606356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|606466_607408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|607501_609037_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|610716_612567_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|612570_613404_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|613403_614345_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|614596_615568_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|615709_617998_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|618304_619213_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|619267_620233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|620307_621969_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|622040_622751_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|622899_623850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|624548_624932_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|624989_625592_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|625609_626011_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|626144_627038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|627034_627616_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|628410_629145_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|629185_630235_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|630382_630961_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|631347_632325_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|632418_636813_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|637013_637862_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|638020_638833_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|638888_639839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|639937_640738_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|640799_641183_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|641194_642628_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|642834_643164_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|643166_643916_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|644098_645019_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|645065_645278_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|645300_645723_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|645739_646840_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|646936_648454_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|648529_649369_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|649390_650272_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|650353_651448_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|651741_652692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|652766_653708_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	659032	705223	4105364	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|659032_660058_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|660098_660338_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|660407_661997_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|661996_662545_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|662625_663198_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|663216_664128_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|664201_665170_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|665292_666366_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|666370_668191_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|668267_669218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|669306_669642_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|669775_670426_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|670447_671866_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|671935_672691_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|672659_673418_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|673428_674310_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|674326_675034_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|675036_675795_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|676004_677747_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|677739_678264_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|678303_679098_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|679265_680339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|680437_681388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|681639_681846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|681917_682529_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|683083_683335_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|683327_684017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|684273_685224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|685863_686349_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|686335_687613_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|687615_689034_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|689062_690118_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|690123_690366_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|690488_691091_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691519_692470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|693144_693396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693458_693941_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|693942_694143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694142_694538_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694534_694933_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694929_695352_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695359_695860_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696114_696633_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696642_696972_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|696989_697280_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697305_699918_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699927_700287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700354_700888_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700884_701274_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701266_705223_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	711389	765319	4105364	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711389_713120_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713172_713601_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713603_714284_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714283_714742_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714778_715753_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715769_717086_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717117_717615_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717701_718391_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718390_719440_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719436_720231_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720399_720750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720725_721283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722412_723363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725500_726730_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726732_728175_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728279_729425_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729456_730254_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730278_731838_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731834_734207_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734316_735420_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735419_736112_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736255_736957_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736941_737319_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738050_739001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739160_740033_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740373_740592_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740631_742011_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742052_743450_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743489_745142_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745145_746030_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746029_746971_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747049_748669_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748835_749651_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749718_750288_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750288_751239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751893_752991_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753024_754290_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754447_755398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755641_756232_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756247_758692_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758811_759783_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759914_760439_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760398_761349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761570_763766_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|763838_764267_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|764368_765319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	816912	888925	4105364	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|816912_817863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|817961_818618_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|818765_821474_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|821483_822503_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|822499_823450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|823548_824037_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|824033_824717_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|824746_828202_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|828237_829098_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|829226_830144_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|830281_831262_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|831321_833112_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|833108_833885_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|833894_834413_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|834525_836796_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|837007_839239_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|839539_839869_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|839885_841370_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|841380_842883_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|842879_844892_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|844909_845218_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|845214_845862_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|845879_846368_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|846389_847463_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|847462_849790_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|849805_851173_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|851169_851664_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|851709_852966_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|852968_853592_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|853666_854143_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|854179_854539_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|854727_855885_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|856197_857148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|857165_857720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857721_858156_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858152_858587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858570_859374_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859390_860206_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|860202_861018_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861164_861866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861893_863852_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863934_864885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|865105_865774_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865897_867004_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867016_870130_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870126_871620_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871634_872306_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|872349_872844_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872984_873632_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873735_875784_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875780_877793_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877818_879153_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879261_880254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|880320_882405_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|882429_883401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|883529_884561_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|884564_885716_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885886_886810_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886887_887712_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887908_888925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	896559	959640	4105364	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|896559_898791_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|899578_900025_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900046_900793_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900936_901914_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902547_903159_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903152_904370_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904510_905461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905457_906177_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906297_908457_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908547_908817_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|909110_909638_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909656_910436_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910603_911620_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911692_912184_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912194_913910_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915073_916024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916020_917853_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918251_918911_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919004_919151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919259_919427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919438_920119_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920400_921117_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921131_922433_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|924577_927466_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927689_929042_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929070_929592_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929588_931043_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931077_931326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931431_932307_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932332_933388_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933400_934192_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934224_935595_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|936771_937722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937774_937996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938155_938368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938487_939606_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940111_940363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940475_941426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941422_941806_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941860_943675_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943824_944652_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944697_945678_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945674_945887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945883_947065_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947228_947963_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947964_950577_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950712_952626_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953241_953652_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953749_954835_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954933_955884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955880_956855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956979_957891_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958167_958560_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958689_959640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	979062	1041218	4105364	transposase	Streptococcus_phage(20.0%)	45	NA	NA
WP_005012067.1|979062_980013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980093_981005_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981065_982211_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982230_983145_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983216_983966_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983965_984895_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985138_986965_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987047_987689_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|987911_988913_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990749_991814_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992611_993520_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995007_996282_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996435_996816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996823_997696_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998001_998382_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998592_999318_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999413_1000364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000468_1001518_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001655_1002672_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004180_1004753_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004812_1005544_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005595_1006513_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1010497_1011880_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011949_1012201_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012346_1012961_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1013147_1015262_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015337_1016189_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016185_1016812_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016808_1018563_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018855_1021561_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021573_1023235_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023247_1025038_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025259_1026435_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026477_1027428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1027526_1028477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1028575_1029316_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1029510_1031547_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1031564_1032575_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1032692_1033886_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1033915_1034689_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1034685_1035876_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1035901_1036840_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1036836_1039185_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1039339_1039981_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1040084_1041218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1049428	1099041	4105364	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1049428_1050379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050677_1051415_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051850_1052174_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052208_1052769_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052889_1053765_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053777_1054725_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054826_1055120_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055146_1057204_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057218_1057719_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057792_1059499_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060362_1061415_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061467_1061857_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061865_1062498_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062597_1063614_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1064402_1065452_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065448_1067092_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1067088_1067976_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068116_1068590_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068579_1069602_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069598_1071026_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071963_1072980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1073312_1074248_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1074297_1076178_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1076244_1076589_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076733_1077870_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077866_1078940_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079097_1080534_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080624_1081266_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010931363.1|1081601_1082618_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1082950_1085698_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1085764_1087186_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087449_1088166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088250_1088568_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088608_1089022_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089023_1089383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089425_1090970_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091053_1091884_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091918_1093073_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093115_1093988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094104_1096393_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097599_1098064_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098090_1099041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1110766	1184090	4105364	tRNA,transposase,protease	Catovirus(22.22%)	52	NA	NA
WP_010930174.1|1110766_1112653_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112594_1112846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112890_1113523_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113541_1114144_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1114295_1115246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115826_1116534_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116892_1117879_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118018_1119032_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119028_1119979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1120091_1120550_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120586_1121900_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121917_1122289_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122285_1123749_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123889_1124618_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124599_1127449_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127661_1128612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128779_1129604_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129603_1130482_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131386_1132502_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132530_1133325_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133321_1135187_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135265_1135898_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135894_1136197_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136239_1137760_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137766_1138522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138551_1139656_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139758_1141459_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141440_1142418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142427_1143708_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143700_1144396_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144429_1145257_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145538_1148769_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149504_1153431_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1156263_1157127_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1157126_1158095_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158164_1159010_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159077_1159632_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159678_1160629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1160727_1161351_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1161523_1163806_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163960_1166657_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166782_1167271_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169681_1172552_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172597_1173812_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174041_1175469_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175566_1176658_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176670_1177429_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177516_1178419_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178415_1179366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1179495_1180479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1180533_1181256_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1182734_1184090_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1320049	1388536	4105364	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320049_1321000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321768_1322407_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323296_1323743_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1323824_1324526_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324526_1325294_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325290_1326529_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326528_1327455_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327557_1328673_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328688_1329639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329992_1330574_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330570_1331404_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331614_1332928_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333104_1333986_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334005_1334857_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334909_1335998_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336108_1337236_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337470_1338082_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338180_1339131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339352_1339730_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339877_1340375_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340371_1340899_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341032_1341848_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1341860_1343042_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343089_1343983_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344109_1344580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344705_1345533_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345561_1346338_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346334_1346610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346624_1347089_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347100_1347802_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1347911_1348412_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348494_1349673_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351300_1351636_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351823_1353272_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353329_1353674_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353780_1354320_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354412_1355363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355461_1355869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356101_1356533_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1356714_1357119_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358355_1358679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358681_1359569_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359601_1360027_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360098_1360452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360691_1361198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361236_1362568_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362627_1363443_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363439_1364294_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367356_1369900_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371266_1373021_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373017_1375138_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375142_1377338_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377334_1380676_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383478_1384429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384494_1384674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384790_1385546_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385532_1386678_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387585_1388536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1449027	1504515	4105364	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449027_1449978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451179_1451626_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451618_1453094_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453090_1453846_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453838_1454849_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454838_1456515_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456827_1457160_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457173_1457569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457578_1457905_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1457901_1458228_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458154_1459177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459173_1459524_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459571_1460000_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460007_1461381_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461521_1461899_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462161_1463469_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463529_1464360_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464356_1464845_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464886_1466407_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466450_1466927_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467730_1470328_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470357_1471179_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471905_1472655_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472838_1473717_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473814_1474531_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474545_1475106_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475272_1476037_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476056_1476914_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476910_1478110_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478149_1479484_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479536_1481873_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481998_1482562_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482570_1483662_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483733_1484189_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484189_1484984_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484980_1486162_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486148_1486754_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486750_1487524_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487535_1488363_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488524_1490888_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490955_1491675_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491798_1492224_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1492258_1493209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493326_1494253_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494318_1495476_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495456_1495924_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496071_1497022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497038_1497473_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497462_1497813_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498009_1499164_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1499160_1500333_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500380_1501274_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501319_1501757_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501816_1502506_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502515_1503466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503564_1504515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1797101	1845116	4105364	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1797101_1798052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1798150_1800751_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1800857_1801862_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1801970_1803311_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1803351_1804380_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1804575_1805121_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1805117_1805678_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1805776_1806727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1806764_1807352_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1807369_1807753_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1809112_1810405_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1810539_1811580_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1811677_1812694_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1812961_1813609_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1813734_1814493_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1814477_1815257_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1815274_1816159_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1816155_1816935_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1817039_1817639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1817927_1818680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1818798_1820199_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1820222_1820621_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1820796_1820997_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1821135_1821864_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1821997_1823413_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1823416_1824280_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1824292_1825042_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1825224_1827240_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1827221_1827890_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1828664_1829615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1829713_1830664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1830812_1831151_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1831208_1831370_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1831401_1831602_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1831867_1834441_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1834511_1837061_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1839611_1840100_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1840191_1841343_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1841396_1842218_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1842256_1843486_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1843614_1844055_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1844165_1845116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1906678	1965948	4105364	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1906678_1907629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1907753_1908563_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1908763_1909714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1910987_1912205_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1913261_1914164_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1914240_1915113_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1915243_1915612_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1915669_1916716_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1916911_1918168_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1918172_1919510_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1919659_1920616_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1920718_1921651_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1921766_1922087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1922079_1922439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1922486_1924061_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1924113_1925058_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1925075_1925906_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1925898_1927533_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1927529_1928885_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1929791_1931369_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1931372_1932647_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1932744_1933119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1934834_1935968_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1936005_1936611_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1936607_1937426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1937497_1940122_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1940108_1940363_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1940429_1941011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1941314_1941575_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1941740_1942364_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1942363_1943137_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1943133_1944342_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1944367_1944841_-	RidA family protein	NA	NA	NA	NA	NA
WP_077069139.1|1944914_1945865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1945963_1946914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1947012_1948362_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1949127_1949883_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1949975_1952858_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1953180_1953606_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1953633_1954782_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1954778_1955285_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1955291_1956587_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1956645_1957932_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1957933_1958572_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1958574_1959735_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1959761_1961117_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1961120_1962191_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1962329_1962566_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1962653_1963760_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1963725_1965030_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1965048_1965948_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	1976188	2033685	4105364	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|1976188_1977139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1977237_1978188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1978387_1979473_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1979488_1980250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1980246_1981206_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1981268_1981769_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1981801_1982545_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1982640_1982880_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1982893_1983046_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1983131_1984622_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1984713_1985652_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1985648_1985825_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1985827_1986490_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1988111_1988255_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1988251_1989226_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1989392_1990343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1990339_1991614_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1991717_1992911_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1992907_1993561_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1993557_1994994_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1994981_1995341_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1996155_1996296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1997260_1999126_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1999383_2000904_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2000991_2001642_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2002590_2003886_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2003907_2004792_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2004890_2005766_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2005755_2006112_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2006242_2007217_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2007346_2007526_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2007623_2008148_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2008158_2008995_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2009107_2009479_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2009475_2010027_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2010042_2011734_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2011782_2012463_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2012710_2013175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2013344_2014274_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2014286_2014934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2015007_2016825_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2016908_2017859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2018511_2019462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2019480_2019828_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2019856_2021296_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2021314_2021710_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2021884_2022493_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2022505_2023324_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2023275_2024250_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2024278_2025340_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2025336_2027553_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2027566_2028025_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2028182_2028527_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2028683_2029589_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2029675_2030689_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|2032668_2033685_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2049235	2113604	4105364	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2049235_2050186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2050407_2051358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2051456_2052422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2052559_2053459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2056053_2057541_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2057551_2058748_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2058820_2060140_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2060136_2061012_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2061042_2062191_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2062208_2062523_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2062544_2063267_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2063266_2064085_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2064089_2064617_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2064622_2065879_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2066237_2067377_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2067454_2068327_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2069197_2070148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2070107_2070743_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2071102_2072425_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2072743_2073565_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2074989_2075562_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2075601_2077431_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2077393_2078452_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2078489_2078951_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2079035_2079782_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2081272_2084503_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2084569_2085901_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2086153_2086528_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2086630_2087809_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2087819_2088410_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2088520_2089327_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2089352_2090147_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2091147_2092122_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2092280_2092793_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2092949_2093921_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2095665_2096472_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2096468_2097770_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2097720_2098485_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2098598_2099369_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2099453_2100641_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2100713_2101088_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2101188_2102451_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2102447_2103305_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2103477_2104479_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2104930_2105881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2107396_2108596_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2108964_2109201_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2109264_2109432_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2109545_2111351_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2111604_2112555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2112653_2113604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2300072	2361420	4105364	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2300072_2301023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2301139_2301859_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2302031_2303018_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2303018_2303501_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2303504_2304788_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2304784_2305723_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2305719_2307429_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2307438_2308686_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2310296_2311586_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2312723_2313482_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2314158_2314902_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2314976_2315717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2315912_2316749_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2316799_2317570_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2317619_2318672_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2318668_2319295_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2319291_2320326_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2320504_2321521_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2321619_2322570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2325310_2326600_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2326718_2327156_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2327199_2328408_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2328554_2329019_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2329042_2329993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2330977_2331751_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2331747_2332746_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2332830_2333607_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2333762_2335367_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2335747_2336872_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2336998_2337622_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2337618_2339520_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2339568_2340363_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2340375_2341377_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2341373_2341880_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2341872_2342721_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2342818_2343361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2343404_2344355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2344510_2344837_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2344833_2345118_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2345114_2345594_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2345590_2347219_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2347215_2347560_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2347559_2350493_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2351651_2352602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2352700_2352997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2353103_2354021_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2354025_2354739_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2354752_2355724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2357443_2357824_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2357827_2359015_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2359438_2360176_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2360469_2361420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2382211	2453365	4105364	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2382211_2383162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2383714_2385340_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2385389_2386424_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2386426_2387773_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2387769_2389284_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2389274_2390285_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2390758_2391700_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2391708_2392677_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2394216_2395185_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2395362_2396352_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2396398_2397157_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2397346_2398084_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2398182_2399133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2399317_2400100_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2400093_2400795_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2401034_2401637_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2402963_2403914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2403910_2405467_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2405459_2406233_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2406291_2407242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2407323_2408499_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2408512_2410570_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2410566_2411592_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2411603_2412893_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2412915_2414013_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2414009_2414900_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2414896_2416981_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2417012_2418182_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2418223_2418964_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2418963_2419734_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2420058_2420226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2420589_2421375_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2421401_2423486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2423653_2425609_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2425932_2426433_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2426531_2428058_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2428195_2429083_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2429097_2430051_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2430102_2432193_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2432208_2432595_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2435288_2436092_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2437385_2438288_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2438352_2439129_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2439450_2440500_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2440623_2442294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2442298_2443093_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2443191_2444142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2444161_2445067_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2445144_2445843_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2446002_2446947_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2446956_2448444_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2448443_2449511_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2449574_2450987_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2451172_2452393_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2452414_2453365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2537565	2588737	4105364	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2537565_2538516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2538614_2539385_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2539381_2540053_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2540049_2540691_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2540703_2541624_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2541784_2542945_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2542986_2543937_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2544601_2544802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2544924_2546619_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2546740_2547010_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2547125_2547524_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2547534_2548491_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2548627_2549173_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2549193_2551143_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2551530_2552307_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2552312_2552705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2553126_2554077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2554073_2555171_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2555202_2556153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2557934_2559176_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2559187_2559961_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559987_2560938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2561036_2561819_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561907_2563134_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2563859_2565245_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2565263_2565869_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565865_2567722_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2567718_2568519_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2568533_2569727_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569794_2570769_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570891_2572115_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2572225_2574430_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2574724_2575384_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2575391_2575598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575936_2576692_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2576707_2576869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2576962_2577478_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2577750_2578068_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2578012_2578657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2578782_2580138_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2580184_2581525_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2581626_2582259_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2582258_2584619_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2584660_2585620_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2585606_2586293_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2586289_2586622_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005013747.1|2586737_2587688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2587786_2588737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2687032	2727701	4105364	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2687032_2687983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688093_2688276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688375_2688972_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689155_2690247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690746_2691157_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691215_2691557_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691562_2693980_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693992_2695015_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695089_2695449_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695464_2695662_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695997_2696948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697142_2697592_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2697588_2698539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698649_2700098_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700212_2700494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700597_2701548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701792_2702506_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702628_2702856_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703150_2703789_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703897_2704932_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704928_2705879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706294_2706819_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706822_2707092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707290_2708352_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708435_2710070_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710071_2710875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710903_2711863_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711866_2713381_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713417_2714422_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714853_2715324_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715359_2715971_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2716001_2716625_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716705_2718238_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718272_2719514_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719557_2720589_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720585_2721755_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721748_2722429_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722590_2723433_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723595_2724567_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724738_2725617_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725639_2726710_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726750_2727701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2783166	2856036	4105364	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783166_2783583_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783693_2784326_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784354_2784798_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784819_2785911_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785965_2786766_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786901_2787522_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787661_2788135_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789274_2790225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790221_2797883_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798123_2802170_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802482_2803064_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803060_2804359_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804438_2805467_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2805727_2806678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806674_2807625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807941_2808547_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808600_2809914_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809988_2810459_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810458_2811247_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811257_2812910_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|2812997_2813948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815109_2815616_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815612_2816377_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816392_2816677_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816741_2817731_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817902_2818832_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818803_2819490_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819523_2820069_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820113_2821379_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821375_2822278_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823459_2824404_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824498_2826016_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826057_2827686_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827793_2828675_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831787_2832162_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832186_2832525_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832568_2834203_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834241_2835588_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835695_2837117_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837186_2837771_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837873_2838824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838958_2840065_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840075_2841173_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841317_2842523_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842529_2843051_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843047_2843539_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843535_2843787_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843767_2844253_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844388_2847850_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847867_2848752_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848761_2849193_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849439_2849943_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850020_2851421_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851495_2852371_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852367_2853375_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853842_2854148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854238_2854829_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855019_2856036_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2859179	2925990	4105364	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_005013747.1|2859179_2860130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860228_2861179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861175_2861970_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2862001_2862706_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862780_2863581_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863577_2863985_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863981_2864623_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864615_2866616_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867876_2869208_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869204_2870155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871861_2872128_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872835_2873174_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877727_2878330_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878426_2879716_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879773_2880505_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880501_2881305_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881301_2882390_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882386_2883316_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883464_2884610_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884631_2885582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885912_2889734_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889890_2890559_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890563_2892237_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892255_2893575_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893579_2895895_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895950_2898119_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898115_2903305_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903394_2903709_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903936_2904182_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904276_2904795_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904894_2906100_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906215_2907613_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907729_2908308_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908380_2909772_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909939_2910890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911170_2911791_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911787_2912201_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912197_2913241_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913296_2913485_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913494_2914259_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914349_2915006_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915097_2915856_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915881_2917483_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917683_2918688_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918788_2919052_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919169_2919946_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920536_2921487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923870_2924983_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925039_2925990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	2956375	3000066	4105364	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956375_2957326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957446_2958343_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960620_2962846_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963010_2964099_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964055_2964709_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964756_2965554_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966085_2967036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967110_2968265_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968321_2969272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969370_2969676_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969704_2970139_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970140_2971385_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971381_2972092_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972106_2973018_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973380_2973785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973781_2974240_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974246_2975155_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975151_2976018_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2976004_2976832_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976842_2977970_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979047_2980286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980327_2981590_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981596_2982349_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982400_2982586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982861_2983326_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983357_2984017_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984161_2986270_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986266_2987217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987320_2987941_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988032_2988785_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989919_2991044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991089_2991458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991699_2992650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993685_2994228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994613_2995564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995560_2996526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996595_2997432_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997944_2999054_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999115_3000066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	3380012	3433753	4105364	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380012_3380963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381367_3382012_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382036_3382621_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382721_3383339_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383341_3385057_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385053_3385362_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385378_3385996_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386040_3386343_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386443_3387298_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387485_3387710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387879_3388152_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388569_3388977_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389346_3390141_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390241_3391477_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391545_3392562_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392573_3393950_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393946_3395143_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395139_3396678_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396674_3397934_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399874_3400825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401591_3402686_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402678_3404013_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403966_3404650_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3404675_3405839_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405835_3406837_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406836_3407709_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407705_3408455_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408451_3409243_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409239_3410379_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410654_3411440_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411473_3412256_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412259_3412649_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413788_3414652_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414687_3415776_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3415772_3416723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417076_3420055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420981_3421860_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423808_3424759_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424755_3425223_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425265_3426036_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426056_3426857_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426867_3428277_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428371_3429157_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429396_3430413_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430520_3430913_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431050_3431731_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431735_3432707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432802_3433753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	3439908	3499208	4105364	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439908_3441672_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441783_3442662_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442774_3443590_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443593_3443845_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443929_3444946_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445276_3445498_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447858_3448776_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449273_3450482_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450561_3452133_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452250_3453186_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453374_3454319_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454886_3460604_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460609_3461737_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461792_3462419_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462690_3463707_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463802_3464513_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464509_3465499_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465594_3467226_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467228_3467966_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468121_3468994_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469262_3470483_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470479_3471139_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471210_3471843_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471872_3472391_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472401_3473511_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473557_3474412_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474413_3475316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476538_3477489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479245_3480235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480231_3480390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480410_3481199_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481195_3482227_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482245_3482809_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482864_3484385_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484648_3485353_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485360_3486098_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486203_3486578_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486620_3487910_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487906_3489076_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489072_3489912_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489971_3490907_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490919_3491870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491968_3492931_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492962_3493322_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493446_3494349_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494350_3496123_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496157_3496934_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498257_3499208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	3514146	3573268	4105364	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3514146_3515097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515225_3516359_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516402_3517308_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517310_3519011_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519007_3519928_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519935_3520913_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520971_3522006_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523980_3524217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524343_3525207_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525295_3526117_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526196_3526934_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526930_3527923_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528036_3528699_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528743_3529892_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532215_3533166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533539_3534490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069140.1|3534564_3535506_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535604_3536555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536851_3537349_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537391_3539167_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539174_3540041_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540047_3540782_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541951_3542746_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543035_3543626_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543659_3544988_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545062_3546208_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546319_3547318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547280_3547715_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549231_3550116_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550112_3551318_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551314_3552175_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552287_3554078_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554118_3554784_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554784_3555093_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555258_3556545_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557978_3558929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560880_3562095_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562200_3563190_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563186_3563795_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563807_3564437_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564433_3565054_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565085_3565877_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566728_3567184_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567202_3568129_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568182_3569469_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570399_3571272_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571268_3572219_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572317_3573268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	3705393	3838319	4105364	tRNA,integrase,transposase	uncultured_Mediterranean_phage(10.34%)	114	3750036:3750053	3794676:3794693
WP_005013747.1|3705393_3706344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3706340_3706976_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3707105_3708005_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3708100_3708592_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3708638_3709604_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3710737_3711979_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3712092_3713109_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3713143_3713620_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3713762_3714671_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3714784_3715897_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3715997_3716483_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3716619_3717870_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3717971_3718484_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3718582_3719533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3719598_3720537_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3720559_3721186_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3721182_3721839_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3721835_3722438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3722444_3723032_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3723212_3723782_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3723852_3725172_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3725278_3725470_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3725721_3727011_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3727165_3728161_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3728245_3728920_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3728916_3729867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3730028_3731270_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3731266_3732211_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3732329_3733280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3733239_3734169_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3734222_3734558_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3734602_3735367_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3735390_3736131_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3736138_3737692_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3737726_3738704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3738976_3739558_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3739609_3746512_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3746958_3747090_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3747355_3747562_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3748566_3749226_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3749253_3750399_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3750036:3750053	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3750539_3750875_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3750949_3751810_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3752073_3752775_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3752944_3753340_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3753449_3754400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3754410_3755052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3755218_3755461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3755559_3756510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3756545_3757013_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3757246_3757624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3757620_3757803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3757806_3758793_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3758789_3759437_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3759494_3760022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3760058_3761243_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3761253_3761595_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3761707_3761908_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3761904_3762894_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3764380_3766351_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3766592_3766991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3766999_3767923_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3768380_3769331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3769561_3771253_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3771301_3771574_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3771570_3771942_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3772037_3772172_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3772577_3773987_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3773989_3775099_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3775193_3777647_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3777765_3778557_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3778676_3780104_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3780142_3781114_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3781532_3782696_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3782783_3783629_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3785185_3786136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3786690_3787065_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3787139_3788198_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3788221_3789172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3792053_3793223_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3793323_3794931_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3794676:3794693	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3794977_3796999_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3797027_3797273_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3797286_3798477_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3798672_3799638_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3799660_3800800_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3801011_3801974_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3802097_3804122_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3804318_3806562_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3806840_3807299_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3808226_3810848_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3810911_3813539_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3813690_3814755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3814754_3815525_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3815533_3816367_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3816379_3817159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3817232_3818666_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3818693_3819452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3819507_3821358_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3821451_3821928_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3821944_3822865_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3822971_3823472_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3823845_3824538_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3824846_3825797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3825793_3829567_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3829903_3831793_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3831804_3832698_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3832801_3833599_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3833595_3834447_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3834508_3835189_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3835225_3835552_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3835552_3836512_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3836532_3837021_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3837302_3838319_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011167	Bordetella pertussis strain C571 chromosome, complete genome	4105364	4027535	4080967	4105364	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4027535_4028486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028655_4029882_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030081_4030948_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030940_4031903_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032003_4032954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033052_4034003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034101_4035052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035048_4036542_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036538_4039646_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039642_4042711_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042707_4043958_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044138_4044900_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044932_4045583_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045585_4046425_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046665_4047409_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047491_4047839_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047936_4048779_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048823_4049711_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049737_4049926_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050023_4051481_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051467_4052994_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053012_4053480_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053479_4054502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054622_4055342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055417_4056518_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056519_4057710_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057829_4058846_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059164_4059836_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059832_4060741_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060952_4061600_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065451_4066528_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066538_4067348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067437_4068211_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068393_4069344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069232_4070255_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070244_4071399_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071438_4072851_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072975_4073842_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073843_4074668_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074664_4075426_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075506_4076193_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076366_4077374_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077370_4078150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078207_4079470_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4080016_4080967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
