assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975445.1_ASM197544v1	NZ_CP019413	Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 chromosome, complete genome	1	3142044-3143111	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,16	17	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP019413.1_3133910_3134672_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019413.1_3134652_3135702_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019413.1_3135698_3136178_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019413.1_3136177_3136888_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019413.1_3136906_3137218_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019413.1_3137408_3137732_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019413.1_3137782_3138388_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019413.1_3138374_3139814_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019413.1_3139823_3140732_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019413.1_3140982_3142029_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP019413.1_3143207_3143501_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP019413.1_3143500_3144421_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP019413.1_3144417_3145068_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP019413.1_3145049_3145796_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP019413.1_3145806_3146865_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP019413.1_3146878_3147439_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP019413.1_3147435_3148992_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP019413.1_3149003_3151667_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP019413.1_3152110_3153064_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP019413.1_3153151_3153886_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001975445.1_ASM197544v1	NZ_CP019413	Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 chromosome, complete genome	2	3159244-3161895	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	43,43,42	43	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP019413.1_3145806_3146865_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP019413.1_3146878_3147439_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP019413.1_3147435_3148992_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP019413.1_3149003_3151667_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP019413.1_3152110_3153064_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019413.1_3153151_3153886_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019413.1_3153961_3155674_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019413.1_3155673_3157473_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019413.1_3157896_3158259_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019413.1_3158348_3159146_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019413.1_3162191_3162863_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019413.1_3162998_3164297_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019413.1_3164379_3166017_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019413.1_3166244_3167045_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP019413.1_3167652_3168240_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP019413.1_3168319_3171019_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP019413.1_3171031_3171805_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP019413.1_3171824_3172331_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP019413.1_3172345_3172816_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP019413.1_3172812_3173349_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_001975445.1_ASM197544v1	NZ_CP019413	Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 chromosome, complete genome	3	4034621-4034722	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	TTATTCCCGATCCGGTGGACCCTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|155aa|down_0|NZ_CP019413.1_4035877_4036342_-,NA|38aa|down_2|NZ_CP019413.1_4037262_4037376_-,NA|160aa|down_4|NZ_CP019413.1_4038903_4039383_-,NA|31aa|down_5|NZ_CP019413.1_4039583_4039676_-	NA|461aa|up_9|NZ_CP019413.1_4020066_4021449_-	PRK11462, PRK11462, putative transporter; Provisional	NA|410aa|up_8|NZ_CP019413.1_4022866_4024096_-	PRK09723, PRK09723, fimbrial-like adhesin	NA|198aa|up_7|NZ_CP019413.1_4024119_4024713_-	PRK15262, PRK15262, putative fimbrial protein StaF; Provisional	NA|203aa|up_6|NZ_CP019413.1_4024728_4025337_-	PRK15263, PRK15263, fimbrial-like protein	NA|195aa|up_5|NZ_CP019413.1_4025351_4025936_-	PRK15241, PRK15241, putative fimbrial protein StaD; Provisional	NA|867aa|up_4|NZ_CP019413.1_4025949_4028550_-	PRK09828, PRK09828, putative fimbrial outer membrane usher protein; Provisional	NA|248aa|up_3|NZ_CP019413.1_4028570_4029314_-	PRK09926, PRK09926, fimbrial chaperone	NA|210aa|up_2|NZ_CP019413.1_4029457_4030087_-	PRK15239, PRK15239, putative fimbrial protein StaA; Provisional	NA|46aa|up_1|NZ_CP019413.1_4031371_4031509_+	pfam01527, HTH_Tnp_1, Transposase	NA|206aa|up_0|NZ_CP019413.1_4032238_4032856_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_CP019413.1_4035877_4036342_-	NA	NA|286aa|down_1|NZ_CP019413.1_4036352_4037210_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|38aa|down_2|NZ_CP019413.1_4037262_4037376_-	NA	NA|227aa|down_3|NZ_CP019413.1_4037994_4038675_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|160aa|down_4|NZ_CP019413.1_4038903_4039383_-	NA	NA|31aa|down_5|NZ_CP019413.1_4039583_4039676_-	NA	NA|909aa|down_6|NZ_CP019413.1_4039697_4042424_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_7|NZ_CP019413.1_4042643_4043339_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_8|NZ_CP019413.1_4043844_4044747_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_9|NZ_CP019413.1_4044789_4045731_-	PRK09956, PRK09956, ISNCY family transposase
