The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	1173349	1181627	4566169		Escherichia_phage(42.86%)	9	NA	NA
WP_000444506.1|1173349_1174600_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.0e-19
WP_023212263.1|1175045_1176170_+	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_023212262.1|1177214_1177628_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	5.5e-19
WP_000733630.1|1177644_1178373_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
WP_000158843.1|1178565_1179108_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1179255_1179633_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|1179705_1180515_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036548.1|1181012_1181177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|1181387_1181627_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 2
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	1800183	1883637	4566169	protease,transposase,lysis,head,tail,capsid,terminase,portal,holin,integrase	Enterobacteria_phage(33.33%)	91	1847926:1847940	1885681:1885695
WP_000984498.1|1800183_1801065_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001091237.1|1801258_1803307_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|1803326_1804013_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001518229.1|1804110_1804608_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_023212561.1|1804736_1806020_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_023212562.1|1805988_1808628_+	PqiB family protein	NA	NA	NA	NA	NA
WP_001633706.1|1808705_1810145_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131167.1|1810262_1810499_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457838.1|1810609_1810801_+	YebW family protein	NA	NA	NA	NA	NA
WP_023212563.1|1810819_1811470_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	2.5e-58
WP_001134848.1|1811694_1811859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000182069.1|1812143_1812866_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_000422887.1|1813549_1813945_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
WP_023212564.1|1814273_1814750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000354406.1|1814878_1815298_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077909932.1|1815666_1815936_+	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	1.4e-07
WP_001576018.1|1816101_1816242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001233453.1|1818436_1819351_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000480735.1|1819483_1819642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848066.1|1819651_1820266_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_001537204.1|1820753_1820900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000457876.1|1821413_1821539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031603924.1|1822108_1822309_+	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_001629197.1|1825011_1825503_-	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
WP_024134652.1|1825557_1825740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|1825804_1825972_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001633683.1|1826228_1826762_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
WP_076735114.1|1827076_1828183_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	Q9QF34	Lambdoid_phage	66.7	3.3e-55
WP_001633682.1|1828179_1829259_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	3.3e-100
WP_076735115.1|1830211_1831012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076735116.1|1832146_1832842_+	T3SS effector NleG family protein	NA	NA	NA	NA	NA
WP_076735117.1|1833664_1834237_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	87.8	3.6e-93
WP_076735118.1|1834226_1835111_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	82.7	1.4e-136
WP_076735119.1|1835107_1837480_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	2.2e-88
WP_076735120.1|1837533_1837776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076735121.1|1837814_1841177_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	80.5	0.0e+00
WP_023197193.1|1841239_1841887_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	79.1	4.2e-90
WP_076735122.1|1841784_1842522_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	6.8e-129
WP_001156291.1|1842528_1843227_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.4	4.6e-103
WP_076735123.1|1843236_1843566_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	1.3e-42
WP_076735124.1|1843568_1846610_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	65.2	6.1e-293
WP_077906431.1|1846581_1846920_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.0e-31
WP_000479607.1|1846916_1847312_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_078060252.1|1847362_1848112_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	2.5e-99
1847926:1847940	attL	CATCAAGATAGTCAT	NA	NA	NA	NA
WP_000033885.1|1848119_1848521_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000677089.1|1848517_1849096_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817265.1|1849204_1850335_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000083292.1|1850367_1850751_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_023165594.1|1850761_1851133_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|1851190_1852219_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|1852273_1852621_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_076735126.1|1852633_1854130_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	6.7e-99
WP_061873945.1|1854119_1855700_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|1855696_1855900_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_023187571.1|1855883_1857815_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.7e-259
WP_001102152.1|1857786_1858332_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	79.9	1.9e-56
WP_000669689.1|1858617_1859019_+	PPC domain-containing protein	NA	NA	NA	NA	NA
WP_086015771.1|1859245_1859701_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.8	8.0e-56
WP_065660702.1|1860018_1860558_-	lysozyme	NA	S5MQK2	Escherichia_phage	74.1	5.7e-77
WP_023260642.1|1860535_1860838_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_000658042.1|1861040_1861229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076735127.1|1861587_1863834_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_065660700.1|1863954_1864317_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	80.0	1.7e-53
WP_000784711.1|1864618_1864813_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	7.9e-13
WP_076735128.1|1864809_1865409_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	84.4	7.0e-100
WP_000911593.1|1865472_1865721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000589341.1|1866255_1866762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076735129.1|1867064_1867442_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	36.8	1.5e-15
WP_000788954.1|1867459_1868212_-	ATP-binding protein	NA	A0A088CBP4	Shigella_phage	76.5	5.9e-104
WP_076735130.1|1868218_1869094_-	DNA-binding protein	NA	A0A088CD36	Shigella_phage	58.5	7.0e-32
WP_001534383.1|1869138_1869633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033909.1|1869619_1869874_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_023165607.1|1869970_1870396_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	9.3e-14
WP_076735131.1|1870840_1871020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000103933.1|1871280_1871556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682660.1|1871560_1871767_+	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
WP_000799629.1|1871842_1872178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076735132.1|1872318_1875009_+	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.3	1.1e-115
WP_001534364.1|1875001_1875832_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
WP_001033921.1|1875867_1876188_+	hypothetical protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
WP_047598971.1|1876180_1876513_+	hypothetical protein	NA	S4TNP2	Salmonella_phage	74.2	3.8e-15
WP_000276802.1|1877124_1877304_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	62.1	4.3e-13
WP_076735133.1|1877402_1877831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076735134.1|1877891_1878194_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.9	1.5e-10
WP_076735135.1|1878144_1879221_+|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	49.0	4.3e-92
WP_076735136.1|1879271_1880477_-	XRE family transcriptional regulator	NA	A0A0U4JD08	Gordonia_phage	26.2	7.9e-26
WP_076735137.1|1880489_1881158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000722368.1|1881648_1882002_-	YebY family protein	NA	NA	NA	NA	NA
WP_001633680.1|1882018_1882894_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_001633679.1|1882894_1883269_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856225.1|1883406_1883637_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
1885681:1885695	attR	CATCAAGATAGTCAT	NA	NA	NA	NA
>prophage 3
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	1986299	1993551	4566169		Morganella_phage(33.33%)	8	NA	NA
WP_023212512.1|1986299_1987730_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	58.1	7.8e-105
WP_023212513.1|1987803_1988499_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.7	4.3e-08
WP_023212514.1|1988578_1988890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023212515.1|1989539_1990736_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.6	7.4e-109
WP_024131163.1|1990994_1991183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|1991193_1991406_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_023212516.1|1991860_1993129_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.4	6.4e-228
WP_000394197.1|1993131_1993551_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 4
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	2080580	2091087	4566169		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2080580_2081894_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_001528452.1|2081920_2083000_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
WP_000648785.1|2083004_2083778_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_001528498.1|2083793_2084768_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973709.1|2084773_2085325_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_015405859.1|2085325_2086204_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.7e-108
WP_015405858.1|2086251_2087151_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
WP_000697846.1|2087150_2088236_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_023212543.1|2088612_2089506_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	3.6e-44
WP_001144954.1|2089683_2091087_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	28.2	3.1e-21
>prophage 5
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	2158254	2167425	4566169	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_023212308.1|2158254_2160288_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703136.1|2160528_2160987_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_023137005.1|2161158_2161689_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2161745_2162213_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2162259_2162979_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|2162975_2164661_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240416.1|2164883_2165615_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2165674_2165782_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|2165762_2166494_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2166477_2167425_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 6
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	4566169	2688236	2694988	4566169		Enterobacteria_phage(85.71%)	9	NA	NA
WP_023209739.1|2688236_2688803_-	hypothetical protein	NA	Q7M2A1	Enterobacteria_phage	64.3	4.8e-58
WP_024146987.1|2688819_2689065_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	75.3	4.1e-30
WP_000149860.1|2689061_2689799_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	64.4	9.0e-81
WP_001673700.1|2690336_2690603_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	73.9	3.6e-32
WP_000980374.1|2690599_2691148_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	69.4	9.7e-32
WP_001216600.1|2691144_2691372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023209824.1|2691368_2691689_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_023209823.1|2691703_2694037_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	84.0	0.0e+00
WP_001592532.1|2694487_2694988_+	hypothetical protein	NA	A0A2H4J2P5	uncultured_Caudovirales_phage	61.3	8.9e-40
