assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975425.1_ASM197542v1	NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	1	2857936-2858023	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	Orphan	GTTTATCCCCGCTGGCGCGGGGAACAC	27	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP019412.1_2849800_2850562_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019412.1_2850542_2851592_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019412.1_2851588_2852068_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019412.1_2852067_2852778_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019412.1_2852796_2853108_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019412.1_2853298_2853622_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019412.1_2853672_2854278_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019412.1_2854264_2855704_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019412.1_2855713_2856622_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019412.1_2856872_2857919_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|318aa|down_0|NZ_CP019412.1_2859996_2860950_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_1|NZ_CP019412.1_2861037_2861772_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_2|NZ_CP019412.1_2861847_2863560_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_3|NZ_CP019412.1_2863559_2865359_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|down_4|NZ_CP019412.1_2865794_2866157_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|down_5|NZ_CP019412.1_2866244_2867042_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_6|NZ_CP019412.1_2868013_2868685_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_7|NZ_CP019412.1_2868820_2870119_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_8|NZ_CP019412.1_2870201_2871839_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_9|NZ_CP019412.1_2872066_2872867_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed
GCF_001975425.1_ASM197542v1	NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	2	2867140-2867717	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,7	9	Orphan	DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	NA,NA	NA|202aa|up_9|NZ_CP019412.1_2853672_2854278_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_8|NZ_CP019412.1_2854264_2855704_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_7|NZ_CP019412.1_2855713_2856622_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_6|NZ_CP019412.1_2856872_2857919_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|318aa|up_5|NZ_CP019412.1_2859996_2860950_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019412.1_2861037_2861772_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019412.1_2861847_2863560_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019412.1_2863559_2865359_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019412.1_2865794_2866157_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019412.1_2866244_2867042_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019412.1_2868013_2868685_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019412.1_2868820_2870119_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019412.1_2870201_2871839_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019412.1_2872066_2872867_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|119aa|down_4|NZ_CP019412.1_2873882_2874239_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_5|NZ_CP019412.1_2874323_2876558_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_6|NZ_CP019412.1_2876609_2877905_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_7|NZ_CP019412.1_2877962_2880719_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_8|NZ_CP019412.1_2880762_2881905_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|447aa|down_9|NZ_CP019412.1_2881982_2883323_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_001975425.1_ASM197542v1	NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	3	3624663-3624741	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	Orphan	CATTACCACCAGGCTGATATCAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,csa3,WYL,PD-DExK	NA,NA|70aa|down_9|NZ_CP019412.1_3637088_3637298_-	NA|311aa|up_9|NZ_CP019412.1_3613852_3614785_+	pfam16154, DUF4862, Domain of unknown function (DUF4862)	NA|158aa|up_8|NZ_CP019412.1_3614923_3615397_+	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|426aa|up_7|NZ_CP019412.1_3615399_3616677_+	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|329aa|up_6|NZ_CP019412.1_3616688_3617675_+	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|499aa|up_5|NZ_CP019412.1_3617678_3619175_+	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|217aa|up_4|NZ_CP019412.1_3619171_3619822_+	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|287aa|up_3|NZ_CP019412.1_3619826_3620687_+	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|232aa|up_2|NZ_CP019412.1_3620680_3621376_+	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|272aa|up_1|NZ_CP019412.1_3621524_3622340_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|652aa|up_0|NZ_CP019412.1_3622603_3624559_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|513aa|down_0|NZ_CP019412.1_3624788_3626327_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|294aa|down_1|NZ_CP019412.1_3626495_3627377_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|384aa|down_2|NZ_CP019412.1_3627448_3628600_-	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional	NA|617aa|down_3|NZ_CP019412.1_3628785_3630636_-	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|464aa|down_4|NZ_CP019412.1_3630632_3632024_-	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|203aa|down_5|NZ_CP019412.1_3632122_3632731_-	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|639aa|down_6|NZ_CP019412.1_3633206_3635123_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|383aa|down_7|NZ_CP019412.1_3635343_3636492_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|197aa|down_8|NZ_CP019412.1_3636488_3637079_+	PRK11001, mtlR, MltR family transcriptional regulator	NA|70aa|down_9|NZ_CP019412.1_3637088_3637298_-	NA
