assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975405.1_ASM197540v1	NZ_CP019411	Salmonella enterica subsp. enterica serovar Johannesburg str. ST203 chromosome, complete genome	1	2407743-2407835	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,WYL,PD-DExK	Orphan	GGATGCTCGTCACTACCTTCGACG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,WYL,PD-DExK	NA|39aa|up_7|NZ_CP019411.1_2403133_2403250_-,NA|61aa|up_6|NZ_CP019411.1_2403246_2403429_-,NA|197aa|up_2|NZ_CP019411.1_2404829_2405420_-,NA|100aa|up_1|NZ_CP019411.1_2405416_2405716_-,NA|56aa|down_0|NZ_CP019411.1_2408237_2408405_-,NA|99aa|down_4|NZ_CP019411.1_2410142_2410439_+,NA|77aa|down_6|NZ_CP019411.1_2411469_2411700_+,NA|70aa|down_7|NZ_CP019411.1_2411859_2412069_+,NA|53aa|down_8|NZ_CP019411.1_2412070_2412229_+	NA|134aa|up_9|NZ_CP019411.1_2401541_2401943_-	pfam16931, Phage_holin_8, Putative phage holin	NA|230aa|up_8|NZ_CP019411.1_2402447_2403137_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|39aa|up_7|NZ_CP019411.1_2403133_2403250_-	NA	NA|61aa|up_6|NZ_CP019411.1_2403246_2403429_-	NA	NA|200aa|up_5|NZ_CP019411.1_2403425_2404025_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|57aa|up_4|NZ_CP019411.1_2404017_2404188_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_3|NZ_CP019411.1_2404187_2404643_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|197aa|up_2|NZ_CP019411.1_2404829_2405420_-	NA	NA|100aa|up_1|NZ_CP019411.1_2405416_2405716_-	NA	NA|458aa|up_0|NZ_CP019411.1_2405720_2407094_-	TIGR00665, DnaB, replicative DNA helicase	NA|56aa|down_0|NZ_CP019411.1_2408237_2408405_-	NA	NA|189aa|down_1|NZ_CP019411.1_2408493_2409060_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|78aa|down_2|NZ_CP019411.1_2409089_2409323_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|235aa|down_3|NZ_CP019411.1_2409427_2410132_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|99aa|down_4|NZ_CP019411.1_2410142_2410439_+	NA	NA|209aa|down_5|NZ_CP019411.1_2410802_2411429_+	pfam18757, Nmad5, Nucleotide modification associated domain 5	NA|77aa|down_6|NZ_CP019411.1_2411469_2411700_+	NA	NA|70aa|down_7|NZ_CP019411.1_2411859_2412069_+	NA	NA|53aa|down_8|NZ_CP019411.1_2412070_2412229_+	NA	NA|70aa|down_9|NZ_CP019411.1_2412225_2412435_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed
GCF_001975405.1_ASM197540v1	NZ_CP019411	Salmonella enterica subsp. enterica serovar Johannesburg str. ST203 chromosome, complete genome	2	2945614-2946618	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3	DEDDh,DinG,cas3,csa3,WYL,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28,29	2	2	2945765-2945796|2945766-2945798	NZ_CP019411.1_924552-924583|NZ_CP019411.1_924552-924584	I-E:I-E:I-E:I-E	16,16,13,13	16	Unclear	DEDDh,DinG,cas3,csa3,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP019411.1_2937480_2938242_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019411.1_2938222_2939272_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019411.1_2939268_2939748_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019411.1_2939747_2940458_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019411.1_2940476_2940788_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019411.1_2940978_2941302_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019411.1_2941352_2941958_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019411.1_2941944_2943384_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019411.1_2943393_2944302_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019411.1_2944552_2945599_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas3|526aa|down_0|NZ_CP019411.1_2946641_2948219_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_1|NZ_CP019411.1_2948602_2949556_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_2|NZ_CP019411.1_2949643_2950378_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_3|NZ_CP019411.1_2950453_2952166_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_4|NZ_CP019411.1_2952165_2953965_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|down_5|NZ_CP019411.1_2954400_2954763_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|down_6|NZ_CP019411.1_2954852_2955650_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_7|NZ_CP019411.1_2956255_2956927_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_8|NZ_CP019411.1_2957062_2958361_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_9|NZ_CP019411.1_2958443_2960081_-	PRK05380, pyrG, CTP synthetase; Validated
GCF_001975405.1_ASM197540v1	NZ_CP019411	Salmonella enterica subsp. enterica serovar Johannesburg str. ST203 chromosome, complete genome	3	2955748-2955959	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,csa3,WYL,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	Unclear	DEDDh,DinG,cas3,csa3,WYL,PD-DExK	NA,NA	NA|480aa|up_9|NZ_CP019411.1_2941944_2943384_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_8|NZ_CP019411.1_2943393_2944302_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_7|NZ_CP019411.1_2944552_2945599_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas3|526aa|up_6|NZ_CP019411.1_2946641_2948219_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_5|NZ_CP019411.1_2948602_2949556_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019411.1_2949643_2950378_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019411.1_2950453_2952166_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019411.1_2952165_2953965_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019411.1_2954400_2954763_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019411.1_2954852_2955650_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019411.1_2956255_2956927_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019411.1_2957062_2958361_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019411.1_2958443_2960081_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019411.1_2960308_2961109_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP019411.1_2961865_2962162_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP019411.1_2962127_2962484_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP019411.1_2962568_2964803_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP019411.1_2964854_2966150_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP019411.1_2966207_2968964_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP019411.1_2969007_2970150_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
