The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	2319	25498	4801835	holin,plate,tRNA,terminase,lysis,tail	Escherichia_phage(66.67%)	29	NA	NA
WP_076936847.1|2319_3063_+|terminase	terminase endonuclease subunit	terminase	A0A0F7LBP7	Escherichia_phage	97.6	7.3e-123
WP_000846409.1|3670_3874_+|tail	tail protein X	tail	A0A0F7LCN2	Escherichia_phage	100.0	3.0e-31
WP_000123123.1|3877_4159_+|holin	phage holin family protein	holin	A0A0F7LA12	Escherichia_phage	100.0	1.3e-43
WP_001144101.1|4158_4656_+	glycoside hydrolase family 104 protein	NA	A0A0F7LBS0	Escherichia_phage	100.0	3.1e-93
WP_076936848.1|5082_5508_+|lysis	LysB family phage lysis regulatory protein	lysis	Q7Y4E2	Escherichia_virus	95.7	1.0e-65
WP_000917179.1|5615_6083_+|tail	phage tail protein	tail	Q7Y4E0	Escherichia_virus	100.0	3.0e-82
WP_032230352.1|6075_6528_+	phage virion morphogenesis protein	NA	A0A0F7LBV9	Escherichia_phage	99.3	1.8e-76
WP_076936849.1|6594_7236_+|plate	phage baseplate assembly protein V	plate	A0A0F7LBP2	Escherichia_phage	89.8	1.0e-96
WP_000127163.1|7232_7580_+	GPW/gp25 family protein	NA	A0A0F7L9X3	Escherichia_phage	100.0	1.7e-58
WP_076936850.1|7584_8493_+|plate	baseplate assembly protein	plate	A0A0F7LCQ9	Escherichia_phage	99.3	3.7e-161
WP_076936851.1|8485_9097_+|tail	phage tail protein I	tail	A0A0F7LA36	Escherichia_phage	99.5	1.1e-116
WP_076936852.1|9093_10380_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	70.3	9.2e-182
WP_021530855.1|10379_10982_+|tail	tail fiber assembly protein	tail	K7P870	Enterobacteria_phage	86.9	8.3e-93
WP_021530854.1|10953_11391_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	64.8	4.8e-50
WP_076936853.1|11393_11804_-	hypothetical protein	NA	F1BUP1	Erwinia_phage	51.6	7.3e-08
WP_076936854.1|11831_12425_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	96.4	3.9e-103
WP_076936855.1|12484_13675_+|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	99.5	1.4e-224
WP_001251405.1|13687_14206_+|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	99.4	5.5e-93
WP_001031303.1|14262_14538_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
WP_000785970.1|14570_14690_+|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	100.0	1.0e-15
WP_076936856.1|14682_17130_+|tail	phage tail tape measure protein	tail	M1T2S3	Escherichia_phage	95.1	0.0e+00
WP_001774113.1|17144_17624_+|tail	phage tail protein	tail	A0A0F7LBX3	Escherichia_phage	98.7	1.9e-84
WP_076936857.1|17623_18790_+	phage late control D family protein	NA	U5N3V4	Enterobacteria_phage	96.4	5.8e-199
WP_023135249.1|18856_19075_+	DNA-binding transcriptional regulator	NA	A0A2I8TV89	Erwinia_phage	100.0	4.3e-39
WP_000237776.1|19433_19940_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_001519776.1|20063_21911_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_039589272.1|22060_23806_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	2.4e-71
WP_001144069.1|24041_24257_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001264389.1|24484_25498_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.2e-109
>prophage 2
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	795974	840471	4801835	holin,integrase,terminase,portal,lysis,coat,protease,tail	Salmonella_phage(53.85%)	67	818134:818150	839498:839514
WP_076937030.1|795974_796913_+|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
WP_001208732.1|797174_797378_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	97.0	2.7e-32
WP_076937032.1|797474_797825_-	hypothetical protein	NA	A0A192Y649	Salmonella_phage	98.3	7.0e-60
WP_188317994.1|797895_798711_-	ead/Ea22-like family protein	NA	A0A0P0ZD75	Stx2-converting_phage	57.2	2.3e-45
WP_076937033.1|798707_799298_-	Eae-like protein	NA	Q5G8U6	Enterobacteria_phage	67.8	3.6e-64
WP_001214770.1|799294_799465_-	DUF2737 family protein	NA	I6S642	Salmonella_phage	100.0	6.1e-25
WP_076937035.1|799475_799769_-	DUF2856 family protein	NA	A0A192Y654	Salmonella_phage	90.7	4.1e-45
WP_078056620.1|799836_800334_-	HNH endonuclease	NA	A0A192Y847	Salmonella_phage	99.4	1.5e-92
WP_076937036.1|800396_800867_-	single-stranded DNA-binding protein	NA	A0A192Y5Y5	Salmonella_phage	100.0	6.1e-59
WP_076937038.1|800867_801575_-	recombinase	NA	Q76H40	Enterobacteria_phage	97.9	2.9e-137
WP_000902089.1|801571_801715_-	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	95.7	1.6e-18
WP_076937039.1|801704_801893_-	DUF5444 family protein	NA	I6S647	Salmonella_phage	95.2	6.9e-30
WP_024147252.1|801873_802032_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	98.1	1.2e-22
WP_076937040.1|802116_802431_-	superinfection exclusion protein	NA	E7C9Q4	Salmonella_phage	99.0	1.6e-55
WP_179127213.1|802580_802739_-	hypothetical protein	NA	K7PMD4	Enterobacterial_phage	98.1	2.9e-21
WP_000713611.1|802738_803026_-	hypothetical protein	NA	Q76H36	Enterobacteria_phage	98.9	7.8e-49
WP_076937041.1|803059_803560_-	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	6.8e-32
WP_076937042.1|803643_803838_-	restriction endonuclease	NA	Q76H34	Enterobacteria_phage	98.4	1.6e-29
WP_038989108.1|804052_804640_+	superinfection exclusion B family protein	NA	A0A0M4R594	Salmonella_phage	99.0	2.8e-85
WP_023228640.1|804652_805015_-	hypothetical protein	NA	C6ZR44	Salmonella_phage	95.0	1.2e-57
WP_076937043.1|805361_805565_+	hypothetical protein	NA	A0A192Y6Q5	Salmonella_phage	91.0	1.1e-25
WP_076937044.1|805693_806557_-	hypothetical protein	NA	M9NYX6	Enterobacteria_phage	63.5	1.3e-94
WP_076937045.1|806620_807268_-	LexA family transcriptional regulator	NA	K7PH19	Enterobacteria_phage	70.8	3.6e-86
WP_042948990.1|807373_807592_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	84.7	1.5e-28
WP_000424165.1|807722_808001_+	lambda phage CII family protein	NA	A0A220NRS4	Escherichia_phage	92.4	4.9e-40
WP_023206529.1|808035_808182_+	DUF2740 family protein	NA	A0A0M4S617	Salmonella_phage	95.8	9.5e-19
WP_006789497.1|808174_809074_+	hypothetical protein	NA	A0A220NQX5	Salmonella_phage	99.3	1.5e-154
WP_076937046.1|809063_810500_+	AAA family ATPase	NA	K7PGR8	Enterobacteria_phage	99.4	5.7e-273
WP_001580121.1|810576_811164_+	HNH endonuclease	NA	A0A1B1W266	Salmonella_phage	47.8	1.8e-36
WP_023259230.1|811165_811591_+	recombination protein NinB	NA	C6ZR55	Salmonella_phage	79.3	1.5e-59
WP_000679702.1|811587_811761_+	hypothetical protein	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
WP_076937047.1|811727_811904_+	NinE family protein	NA	C6ZR57	Salmonella_phage	98.3	7.9e-28
WP_000386647.1|811906_812266_+	DUF2591 family protein	NA	G8EYI2	Enterobacteria_phage	95.8	5.9e-62
WP_000950962.1|812265_812442_+	protein ninF	NA	A0A220NRM2	Escherichia_phage	100.0	1.9e-26
WP_076937048.1|812434_813157_+	phage antirepressor KilAC domain-containing protein	NA	K7P7L0	Enterobacteria_phage	98.8	1.0e-129
WP_001535921.1|813156_813447_+	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	99.0	3.8e-51
WP_001008199.1|813443_813806_+	RusA family crossover junction endodeoxyribonuclease	NA	A5VW85	Enterobacteria_phage	100.0	9.2e-63
WP_000994516.1|813802_813991_+	protein ninH	NA	A5VW84	Enterobacteria_phage	100.0	5.5e-27
WP_076937049.1|813987_814506_+	DUF1133 family protein	NA	A0A1R3Y5U9	Salmonella_virus	99.4	5.9e-95
WP_000658765.1|814700_815213_+	HNH endonuclease	NA	K7PL52	Enterobacteria_phage	100.0	4.7e-97
WP_000738703.1|815663_815990_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_017441427.1|815973_816411_+	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	8.2e-74
WP_076937839.1|816428_816881_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	81.2	6.5e-58
WP_076937050.1|817093_817624_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	97.7	1.8e-91
WP_058115777.1|817987_818230_+	DUF2560 family protein	NA	A0A1R3Y5V5	Salmonella_virus	98.8	3.7e-36
818134:818150	attL	CCAGTCAGGCGGCGCTA	NA	NA	NA	NA
WP_000091987.1|818231_818411_+	hypothetical protein	NA	A0A088CPS9	Enterobacteria_phage	100.0	3.7e-25
WP_000729924.1|818434_818923_+	DNA-packaging protein	NA	A8CGG1	Salmonella_phage	100.0	2.9e-88
WP_076937051.1|818900_820400_+|terminase	terminase large subunit	terminase	C6ZR07	Salmonella_phage	99.8	1.4e-306
WP_076937052.1|820399_822577_+|portal	portal protein	portal	I6R968	Salmonella_phage	98.2	0.0e+00
WP_076937053.1|822590_823502_+	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.3	7.0e-160
WP_001196933.1|823501_824794_+|coat	coat protein	coat	C6ZR10	Salmonella_phage	99.8	1.1e-243
WP_076937054.1|824834_825395_+	hypothetical protein	NA	I6S1J7	Salmonella_phage	98.4	5.4e-102
WP_001166101.1|825378_825879_+	packaged DNA stabilization gp4 family protein	NA	I1TEJ0	Salmonella_phage	98.8	5.5e-90
WP_076937055.1|825838_827257_+	packaged DNA stabilization protein gp10	NA	I1TEJ1	Salmonella_phage	97.9	1.8e-271
WP_076937056.1|827260_827899_+|tail	phage tail protein	tail	A0A088CPT1	Enterobacteria_phage	93.4	1.4e-85
WP_076937057.1|827898_828354_+	DUF2824 family protein	NA	I6R0L6	Salmonella_phage	98.0	1.3e-85
WP_076937058.1|828356_829046_+	DNA transfer protein	NA	B9UDK9	Salmonella_phage	89.1	4.3e-93
WP_076937840.1|829088_830396_+	phage DNA ejection protein	NA	I6RSG0	Salmonella_phage	73.5	2.0e-163
WP_001334102.1|832245_832614_-	hypothetical protein	NA	I6S5X4	Salmonella_phage	98.4	2.9e-64
WP_021548181.1|832719_833580_-	helix-turn-helix domain-containing protein	NA	K7P850	Enterobacteria_phage	35.1	4.6e-20
WP_021548180.1|833677_833851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058216842.1|833924_834563_+	hypothetical protein	NA	H6WRU8	Salmonella_phage	83.5	1.2e-97
WP_021548178.1|834647_835421_+	ORF6N domain-containing protein	NA	H6WRU9	Salmonella_phage	65.7	1.1e-78
WP_063916533.1|835454_835703_-	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	84.2	7.3e-27
WP_188317995.1|835838_837971_+	hypothetical protein	NA	A0A0M4RD19	Salmonella_phage	51.4	3.0e-60
WP_076937059.1|838046_839216_-|integrase	tyrosine-type recombinase/integrase	integrase	I6R0M2	Salmonella_phage	99.5	2.7e-228
WP_000377772.1|839529_840471_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	1.4e-147
839498:839514	attR	TAGCGCCGCCTGACTGG	NA	NA	NA	NA
>prophage 3
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	1076839	1086010	4801835	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1076839_1077787_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824854.1|1077770_1078502_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1078482_1078590_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1078649_1079381_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1079603_1081289_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1081285_1082005_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1082051_1082519_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_069721497.1|1082575_1083106_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1083277_1083736_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_076937102.1|1083976_1086010_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	1281225	1288466	4801835		Morganella_phage(33.33%)	8	NA	NA
WP_023252613.1|1281225_1281645_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	1.1e-35
WP_076937159.1|1281647_1282916_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	1.9e-227
WP_000208509.1|1283361_1283574_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|1283584_1283773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076937160.1|1284032_1285226_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.0	3.3e-109
WP_000107435.1|1285875_1286187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039519912.1|1286266_1286962_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	6.2e-07
WP_001157305.1|1287035_1288466_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	2891504	2935865	4801835	holin,integrase,plate,head,terminase,lysis,tail	Salmonella_phage(60.0%)	54	2890004:2890022	2931977:2931995
2890004:2890022	attL	ATGGTGCCGATAATAGGAG	NA	NA	NA	NA
WP_000143174.1|2891504_2892080_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	91.0	1.5e-96
WP_000049936.1|2893611_2894292_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	8.1e-129
WP_063267817.1|2894288_2895488_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.2	1.1e-213
WP_001270643.1|2895488_2895842_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	97.4	2.1e-59
WP_000301076.1|2895841_2896594_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	71.7	1.2e-93
WP_023135366.1|2896816_2897182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063267818.1|2897201_2897534_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	70.9	2.9e-23
WP_063267819.1|2897530_2898604_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	95.8	1.3e-184
WP_063267820.1|2898606_2898909_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	99.0	1.2e-52
WP_000353826.1|2898908_2899484_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
WP_063267821.1|2899483_2901493_-	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	99.7	0.0e+00
WP_000389018.1|2901670_2902123_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	100.0	5.1e-79
WP_000501635.1|2902126_2902567_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	100.0	9.4e-78
WP_063267822.1|2902577_2903729_-	DUF3383 family protein	NA	A0A0M4RD26	Salmonella_phage	99.7	9.6e-215
WP_057935452.1|2903731_2904298_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	98.9	8.9e-105
WP_001142474.1|2904272_2904662_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	97.7	6.0e-68
WP_000008736.1|2904648_2905203_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.8e-94
WP_001125677.1|2905199_2905607_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	1.0e-70
WP_001040702.1|2905572_2905941_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_063267823.1|2905982_2906924_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	9.1e-179
WP_000128057.1|2906935_2907433_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873159.1|2907437_2908670_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
WP_138010671.1|2908684_2909422_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_063267824.1|2909306_2910776_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	2.2e-280
WP_063267825.1|2910775_2912398_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	98.7	0.0e+00
WP_063267826.1|2912400_2912973_-|terminase	terminase small subunit	terminase	A0A2H4J480	uncultured_Caudovirales_phage	68.5	1.0e-60
WP_063267827.1|2912993_2913482_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	91.9	4.5e-73
WP_063267828.1|2913478_2914093_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	83.8	5.3e-95
WP_020844532.1|2914092_2914374_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	79.3	8.2e-35
WP_001294874.1|2914360_2914750_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	71.0	1.8e-40
WP_000658039.1|2914839_2915028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001244502.1|2915613_2916048_-	antitermination protein Q	NA	B6SD39	Bacteriophage	58.9	4.5e-40
WP_063267829.1|2916336_2918523_-	replication protein	NA	B6SCY1	Bacteriophage	71.5	1.6e-173
WP_000170999.1|2918526_2918739_-	helix-turn-helix transcriptional regulator	NA	A0A0R6PHL1	Moraxella_phage	42.9	6.0e-06
WP_000049987.1|2918859_2919483_+	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	45.3	1.1e-36
WP_023135388.1|2920026_2920551_+	hypothetical protein	NA	C9EH97	Sodalis_phage	48.8	8.4e-41
WP_063267830.1|2920809_2921712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063267831.1|2921714_2923016_+	DUF2800 domain-containing protein	NA	B6SCX9	Bacteriophage	56.4	1.6e-133
WP_063267832.1|2923030_2923579_+	DUF2815 family protein	NA	Q775A5	Bordetella_phage	64.8	3.5e-66
WP_063267833.1|2923628_2924267_+	hypothetical protein	NA	H6WRY3	Salmonella_phage	71.0	2.0e-76
WP_063267834.1|2924341_2926408_+	DNA polymerase	NA	Q775A3	Bordetella_phage	67.8	2.8e-273
WP_000077590.1|2926412_2926625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000873865.1|2926621_2926825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000007248.1|2926835_2927051_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_063267835.1|2927051_2927531_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	6.7e-69
WP_063267836.1|2927533_2927842_+	VRR-NUC domain-containing protein	NA	B6SD64	Bacteriophage	64.7	2.2e-25
WP_109208487.1|2927799_2928555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070075.1|2928591_2929992_+	DEAD/DEAH box helicase	NA	Q3LZN8	Bacteriophage	73.4	6.0e-211
WP_024136027.1|2930000_2930177_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001046411.1|2930183_2930651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772661.1|2930651_2931824_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	49.0	5.0e-110
WP_076937484.1|2932168_2933416_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.9	5.5e-99
2931977:2931995	attR	ATGGTGCCGATAATAGGAG	NA	NA	NA	NA
WP_076937485.1|2933427_2934531_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	4.1e-61
WP_001043667.1|2934812_2935865_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
>prophage 6
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	3394206	3480333	4801835	integrase,tRNA,transposase,protease,tail	Salmonella_phage(31.58%)	71	3454162:3454177	3471911:3471926
WP_001094606.1|3394206_3395220_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000841654.1|3395220_3395994_-	Uxu operon transcriptional regulator	NA	NA	NA	NA	NA
WP_023193204.1|3396343_3397018_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_076937567.1|3397014_3397476_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_020898330.1|3397680_3398592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023138505.1|3398867_3399863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000864866.1|3400114_3400723_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_076937568.1|3401210_3401468_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_078056645.1|3401472_3403104_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000532939.1|3403664_3404381_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_078056668.1|3405205_3405808_+	DUF1819 family protein	NA	NA	NA	NA	NA
WP_000566905.1|3405804_3406407_+	DUF1788 domain-containing protein	NA	NA	NA	NA	NA
WP_076937571.1|3406418_3410060_+	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_076937572.1|3410104_3413749_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_076937573.1|3413748_3414837_+	ATP-binding protein	NA	K7PHD1	Enterobacteria_phage	27.3	1.8e-05
WP_078056646.1|3414814_3415636_+	DUF4435 domain-containing protein	NA	NA	NA	NA	NA
WP_076937869.1|3415638_3418236_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA	NA
WP_001193068.1|3418246_3420331_+|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_094742629.1|3421606_3422862_-|transposase	IS3 family transposase	transposase	B6DZX3	Stx2-converting_phage	30.3	1.7e-18
WP_076937576.1|3424122_3425223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076937870.1|3429321_3429441_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	2.6e-14
WP_188317985.1|3429455_3429710_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	91.7	3.4e-32
WP_076937577.1|3429812_3430328_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	94.7	9.0e-88
WP_076937578.1|3430337_3431510_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	92.8	5.8e-207
WP_076937871.1|3432639_3433014_+|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	72.7	1.2e-25
WP_078056648.1|3432985_3433108_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	83.3	5.3e-07
WP_076937579.1|3433240_3434446_-	acyltransferase	NA	A0A088CPR9	Enterobacteria_phage	27.2	6.9e-22
WP_076937580.1|3434567_3434984_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	56.7	1.2e-37
WP_076937581.1|3435286_3435571_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	44.8	4.0e-13
WP_078056649.1|3435567_3436422_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	55.0	2.4e-77
WP_001199743.1|3437244_3437553_-	CcdB family protein	NA	NA	NA	NA	NA
WP_000016244.1|3437555_3437795_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
WP_023203347.1|3437903_3438152_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_076937583.1|3438216_3439050_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_001194750.1|3439165_3439507_-	toxin	NA	NA	NA	NA	NA
WP_000380486.1|3439550_3439892_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
WP_076937584.1|3439914_3440136_-	DUF987 family protein	NA	NA	NA	NA	NA
WP_023240991.1|3440132_3440633_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_076937585.1|3440645_3441467_-	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	39.0	4.0e-45
WP_078056650.1|3441551_3442568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076937586.1|3442530_3442734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023892166.1|3442750_3442897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076937587.1|3442969_3443683_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_076937588.1|3444036_3444330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149866838.1|3444435_3445395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076937590.1|3445894_3446530_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_001620335.1|3446634_3446841_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_076937591.1|3446897_3447473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149866839.1|3448164_3449346_-	HNH endonuclease	NA	A0A1S6KZY3	Salmonella_phage	38.1	2.0e-10
WP_076937593.1|3450015_3453429_+	DEAD/DEAH box helicase family protein	NA	Q6NDX2	Leptospira_phage	26.3	1.9e-16
3454162:3454177	attL	CGCGGCGAACTGGAAG	NA	NA	NA	NA
WP_188317986.1|3455120_3456338_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_076937594.1|3456334_3458026_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_076937595.1|3458015_3458942_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_076937596.1|3459043_3460009_+	5'-nucleotidase	NA	NA	NA	NA	NA
WP_076937597.1|3460086_3460962_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_076937598.1|3461177_3462443_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	39.3	5.5e-78
WP_000152563.1|3462936_3463956_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.3e-42
WP_076937599.1|3463983_3464514_-	gluconokinase	NA	NA	NA	NA	NA
WP_076937600.1|3464730_3465762_+	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000998688.1|3465786_3466551_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_001128356.1|3466612_3467932_+	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_001244065.1|3467995_3468994_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001182242.1|3469189_3470272_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_000584132.1|3470271_3471372_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_000397158.1|3471766_3473278_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	8.3e-49
3471911:3471926	attR	CGCGGCGAACTGGAAG	NA	NA	NA	NA
WP_001523689.1|3473414_3473858_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_020898298.1|3473857_3476713_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	1.0e-140
WP_001534452.1|3476854_3478042_-	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_078056651.1|3478236_3478740_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000826193.1|3478846_3479335_+	DUF3617 domain-containing protein	NA	NA	NA	NA	NA
WP_023257565.1|3479568_3480333_-|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4801835	4753014	4800033	4801835	holin,integrase,plate,head,terminase,portal,lysis,capsid,tail	Escherichia_phage(51.22%)	55	4748834:4748848	4776567:4776581
4748834:4748848	attL	CGCAGCGGCGTATCG	NA	NA	NA	NA
WP_000785626.1|4753014_4753413_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_000031219.1|4753415_4753721_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000877297.1|4753762_4754131_-	DUF1090 domain-containing protein	NA	NA	NA	NA	NA
WP_000917516.1|4754275_4754659_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA	NA
WP_000422143.1|4754662_4755325_-	DedA family protein	NA	NA	NA	NA	NA
WP_000235363.1|4755774_4757019_-	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_001098833.1|4757273_4758242_-	TerC family protein	NA	I7HPH5	Enterobacteria_phage	34.9	5.0e-39
WP_000617682.1|4758511_4759510_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000951045.1|4759598_4760291_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
WP_000202966.1|4760442_4760940_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_023206299.1|4761025_4762162_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA	NA
WP_023206298.1|4762242_4764261_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
WP_076937817.1|4764431_4765811_-	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	29.0	3.8e-32
WP_076937818.1|4766240_4767761_+	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	47.8	8.4e-33
WP_000478462.1|4768148_4769717_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
WP_000983434.1|4769713_4770361_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076937819.1|4770592_4771360_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_076937820.1|4771556_4772594_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	97.4	6.7e-199
WP_076937821.1|4772593_4773172_-	phage repressor protein CI	NA	A0A218M4J1	Erwinia_phage	63.6	9.2e-65
WP_000135597.1|4773302_4773566_+	hypothetical protein	NA	A0A218M4I5	Erwinia_phage	89.7	3.3e-38
WP_000459332.1|4773596_4774106_+	phage regulatory CII family protein	NA	A0A0M4QWN1	Salmonella_phage	98.8	6.2e-89
WP_000920168.1|4774113_4774341_+	DUF2724 domain-containing protein	NA	A0A0M4RTI3	Salmonella_phage	97.3	2.1e-36
WP_000085639.1|4774327_4774528_+	hypothetical protein	NA	A0A0M5M7U3	Salmonella_phage	98.5	2.3e-31
WP_001246237.1|4774597_4774825_+	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	100.0	6.8e-32
WP_000752604.1|4774824_4775049_+	TraR/DksA family transcriptional regulator	NA	Q6K1F5	Salmonella_virus	100.0	6.5e-35
WP_153259982.1|4775070_4775664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076937823.1|4775689_4777909_+	replication endonuclease	NA	A0A218M4H2	Erwinia_phage	95.8	0.0e+00
4776567:4776581	attR	CGATACGCCGCTGCG	NA	NA	NA	NA
WP_023135274.1|4778027_4778468_+	DinI family protein	NA	A0A218M4I0	Erwinia_phage	98.5	2.7e-69
WP_076937824.1|4778549_4779281_+	hypothetical protein	NA	Q37850	Escherichia_phage	94.7	1.4e-129
WP_000038161.1|4779757_4780792_-|portal	phage portal protein	portal	A0A0F7LDI7	Escherichia_phage	100.0	1.9e-201
WP_000156861.1|4780791_4782564_-|terminase	terminase ATPase subunit family protein	terminase	A0A0F7LCK3	Escherichia_phage	99.8	0.0e+00
WP_076937826.1|4782737_4783592_+|capsid	GPO family capsid scaffolding protein	capsid	Q94MB7	Escherichia_virus	88.4	7.1e-138
WP_076937827.1|4783650_4784724_+|capsid	phage major capsid protein, P2 family	capsid	Q94MK2	Enterobacteria_phage	99.7	3.3e-201
WP_076936847.1|4784727_4785471_+|terminase	terminase endonuclease subunit	terminase	A0A0F7LBP7	Escherichia_phage	97.6	7.3e-123
WP_076937828.1|4785570_4786080_+|head	head completion/stabilization protein	head	A0A0F7L9Y3	Escherichia_phage	99.4	5.6e-90
WP_000846409.1|4786079_4786283_+|tail	tail protein X	tail	A0A0F7LCN2	Escherichia_phage	100.0	3.0e-31
WP_000123123.1|4786286_4786568_+|holin	phage holin family protein	holin	A0A0F7LA12	Escherichia_phage	100.0	1.3e-43
WP_001144101.1|4786567_4787065_+	glycoside hydrolase family 104 protein	NA	A0A0F7LBS0	Escherichia_phage	100.0	3.1e-93
WP_001598741.1|4787079_4787505_+	hypothetical protein	NA	A0A0F7LDU9	Escherichia_phage	97.2	5.0e-60
WP_076936848.1|4787492_4787918_+|lysis	LysB family phage lysis regulatory protein	lysis	Q7Y4E2	Escherichia_virus	95.7	1.0e-65
WP_000917179.1|4788025_4788493_+|tail	phage tail protein	tail	Q7Y4E0	Escherichia_virus	100.0	3.0e-82
WP_032230352.1|4788485_4788938_+	phage virion morphogenesis protein	NA	A0A0F7LBV9	Escherichia_phage	99.3	1.8e-76
WP_076936849.1|4789004_4789646_+|plate	phage baseplate assembly protein V	plate	A0A0F7LBP2	Escherichia_phage	89.8	1.0e-96
WP_000127163.1|4789642_4789990_+	GPW/gp25 family protein	NA	A0A0F7L9X3	Escherichia_phage	100.0	1.7e-58
WP_076936850.1|4789994_4790903_+|plate	baseplate assembly protein	plate	A0A0F7LCQ9	Escherichia_phage	99.3	3.7e-161
WP_076936851.1|4790895_4791507_+|tail	phage tail protein I	tail	A0A0F7LA36	Escherichia_phage	99.5	1.1e-116
WP_021530854.1|4792702_4793140_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	64.8	4.8e-50
WP_021530855.1|4793111_4793714_-|tail	tail fiber assembly protein	tail	K7P870	Enterobacteria_phage	86.9	8.3e-93
WP_076937829.1|4793713_4794211_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	69.3	3.3e-55
WP_076936854.1|4794241_4794835_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	96.4	3.9e-103
WP_076936855.1|4794894_4796085_+|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	99.5	1.4e-224
WP_001251405.1|4796097_4796616_+|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	99.4	5.5e-93
WP_001031303.1|4796672_4796948_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
WP_000785970.1|4796980_4797100_+|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	100.0	1.0e-15
WP_001774113.1|4799553_4800033_+|tail	phage tail protein	tail	A0A0F7LBX3	Escherichia_phage	98.7	1.9e-84
