assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975325.1_ASM197532v1	NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	1	306986-307626	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	TypeI-E	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	NA,NA	NA|179aa|up_9|NZ_CP019405.1_295671_296208_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP019405.1_296204_296675_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP019405.1_296689_297196_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP019405.1_297215_297989_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP019405.1_298001_300701_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP019405.1_300780_301368_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP019405.1_301973_302774_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP019405.1_303001_304639_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP019405.1_304721_306020_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP019405.1_306155_306827_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP019405.1_307723_308521_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP019405.1_308608_308971_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP019405.1_309394_311194_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP019405.1_311193_312906_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP019405.1_313007_313742_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP019405.1_313829_314783_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP019405.1_315226_317890_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_7|NZ_CP019405.1_317901_319461_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP019405.1_319457_320018_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP019405.1_320031_321090_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_001975325.1_ASM197532v1	NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	2	323786-324931	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	16,18,18,16	18	TypeI-E	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	NA,NA	NA|245aa|up_9|NZ_CP019405.1_313007_313742_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP019405.1_313829_314783_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP019405.1_315226_317890_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP019405.1_317901_319461_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP019405.1_319457_320018_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP019405.1_320031_321090_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP019405.1_321100_321847_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP019405.1_321828_322479_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP019405.1_322475_323396_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019405.1_323395_323689_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP019405.1_324945_325992_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019405.1_326241_327150_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP019405.1_327159_328599_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019405.1_328585_329191_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP019405.1_329241_329565_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019405.1_329755_330067_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019405.1_330085_330796_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019405.1_330795_331275_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019405.1_331271_332321_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019405.1_332301_333063_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001975325.1_ASM197532v1	NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	3	808570-808659	3	CRISPRCasFinder	no		WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	NA|121aa|up_6|NZ_CP019405.1_804652_805015_-,NA|68aa|up_5|NZ_CP019405.1_805361_805565_+,NA|288aa|up_4|NZ_CP019405.1_805693_806557_-,NA	NA|167aa|up_9|NZ_CP019405.1_803059_803560_-	pfam13392, HNH_3, HNH endonuclease	NA|65aa|up_8|NZ_CP019405.1_803643_803838_-	pfam11058, Ral, Antirestriction protein Ral	NA|196aa|up_7|NZ_CP019405.1_804052_804640_+	pfam14163, SieB, Super-infection exclusion protein B	NA|121aa|up_6|NZ_CP019405.1_804652_805015_-	NA	NA|68aa|up_5|NZ_CP019405.1_805361_805565_+	NA	NA|288aa|up_4|NZ_CP019405.1_805693_806557_-	NA	NA|216aa|up_3|NZ_CP019405.1_806620_807268_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|73aa|up_2|NZ_CP019405.1_807373_807592_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|93aa|up_1|NZ_CP019405.1_807722_808001_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP019405.1_808035_808182_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP019405.1_809063_810500_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|196aa|down_1|NZ_CP019405.1_810576_811164_+	pfam13392, HNH_3, HNH endonuclease	NA|142aa|down_2|NZ_CP019405.1_811165_811591_+	pfam05772, NinB, NinB protein	NA|58aa|down_3|NZ_CP019405.1_811587_811761_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_4|NZ_CP019405.1_811727_811904_+	pfam05322, NinE, NINE Protein	NA|120aa|down_5|NZ_CP019405.1_811906_812266_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_6|NZ_CP019405.1_812265_812442_+	pfam05810, NinF, NinF protein	NA|241aa|down_7|NZ_CP019405.1_812434_813157_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|97aa|down_8|NZ_CP019405.1_813156_813447_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_9|NZ_CP019405.1_813443_813806_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed
GCF_001975325.1_ASM197532v1	NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	4	4205377-4205471	4	CRISPRCasFinder	no	cas3	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	NA|31aa|up_5|NZ_CP019405.1_4200514_4200607_+,NA|160aa|up_4|NZ_CP019405.1_4200807_4201287_+,NA|38aa|up_2|NZ_CP019405.1_4202753_4202867_+,NA|155aa|up_0|NZ_CP019405.1_4203787_4204252_+,NA|284aa|down_7|NZ_CP019405.1_4218367_4219219_+	NA|314aa|up_9|NZ_CP019405.1_4194459_4195401_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP019405.1_4195443_4196346_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP019405.1_4196851_4197547_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP019405.1_4197766_4200493_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP019405.1_4200514_4200607_+	NA	NA|160aa|up_4|NZ_CP019405.1_4200807_4201287_+	NA	NA|227aa|up_3|NZ_CP019405.1_4201454_4202135_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP019405.1_4202753_4202867_+	NA	NA|286aa|up_1|NZ_CP019405.1_4202919_4203777_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP019405.1_4203787_4204252_+	NA	NA|206aa|down_0|NZ_CP019405.1_4207273_4207891_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|46aa|down_1|NZ_CP019405.1_4208620_4208758_-	pfam01527, HTH_Tnp_1, Transposase	NA|461aa|down_2|NZ_CP019405.1_4209895_4211278_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_3|NZ_CP019405.1_4211289_4213608_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_4|NZ_CP019405.1_4213710_4215420_-	pfam05170, AsmA, AsmA family	NA|464aa|down_5|NZ_CP019405.1_4215540_4216932_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_6|NZ_CP019405.1_4217159_4218365_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|284aa|down_7|NZ_CP019405.1_4218367_4219219_+	NA	cas3|694aa|down_8|NZ_CP019405.1_4219221_4221303_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_9|NZ_CP019405.1_4221308_4221998_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional
GCF_001975325.1_ASM197532v1	NZ_CP019405	Salmonella enterica subsp. enterica serovar Bergen str. ST350 chromosome, complete genome	5	4709771-4709871	5	CRISPRCasFinder	no		WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,PD-DExK	NA,NA|177aa|down_1|NZ_CP019405.1_4711389_4711920_-	NA|448aa|up_9|NZ_CP019405.1_4695849_4697193_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP019405.1_4697820_4698273_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP019405.1_4698300_4699803_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP019405.1_4699827_4702506_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP019405.1_4702726_4703128_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP019405.1_4703127_4704072_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP019405.1_4704222_4704492_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP019405.1_4704733_4706869_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP019405.1_4706978_4707863_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP019405.1_4707968_4708049_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP019405.1_4710084_4711329_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP019405.1_4711389_4711920_-	NA	NA|240aa|down_2|NZ_CP019405.1_4712078_4712798_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP019405.1_4712775_4713783_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP019405.1_4713960_4714857_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP019405.1_4714847_4715843_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP019405.1_4716059_4716584_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP019405.1_4716577_4717081_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP019405.1_4717067_4717385_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP019405.1_4717422_4717866_+	PRK03467, PRK03467, hypothetical protein; Provisional
