assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975305.1_ASM197530v1	NZ_CP019404	Salmonella enterica subsp. enterica serovar Bardo strain SA20113257 chromosome, complete genome	1	1295270-1295359	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|111aa|up_6|NZ_CP019404.1_1291331_1291664_-,NA|68aa|up_5|NZ_CP019404.1_1292042_1292246_+,NA|308aa|up_4|NZ_CP019404.1_1292281_1293205_-,NA|110aa|down_2|NZ_CP019404.1_1297777_1298107_+,NA|60aa|down_9|NZ_CP019404.1_1300043_1300223_+	NA|49aa|up_9|NZ_CP019404.1_1289960_1290107_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|220aa|up_8|NZ_CP019404.1_1290315_1290975_-	PRK09946, PRK09946, hypothetical protein; Provisional	NA|65aa|up_7|NZ_CP019404.1_1291058_1291253_-	pfam11058, Ral, Antirestriction protein Ral	NA|111aa|up_6|NZ_CP019404.1_1291331_1291664_-	NA	NA|68aa|up_5|NZ_CP019404.1_1292042_1292246_+	NA	NA|308aa|up_4|NZ_CP019404.1_1292281_1293205_-	NA	NA|230aa|up_3|NZ_CP019404.1_1293293_1293983_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|up_2|NZ_CP019404.1_1294093_1294309_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|94aa|up_1|NZ_CP019404.1_1294419_1294701_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP019404.1_1294735_1294882_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP019404.1_1295763_1297200_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|91aa|down_1|NZ_CP019404.1_1297274_1297547_+	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|110aa|down_2|NZ_CP019404.1_1297777_1298107_+	NA	NA|149aa|down_3|NZ_CP019404.1_1298063_1298510_+	pfam05772, NinB, NinB protein	NA|59aa|down_4|NZ_CP019404.1_1298506_1298683_+	pfam05322, NinE, NINE Protein	NA|137aa|down_5|NZ_CP019404.1_1298679_1299090_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_6|NZ_CP019404.1_1299082_1299259_+	pfam05810, NinF, NinF protein	NA|204aa|down_7|NZ_CP019404.1_1299251_1299863_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|68aa|down_8|NZ_CP019404.1_1299859_1300063_+	pfam06322, Phage_NinH, Phage NinH protein	NA|60aa|down_9|NZ_CP019404.1_1300043_1300223_+	NA
GCF_001975305.1_ASM197530v1	NZ_CP019404	Salmonella enterica subsp. enterica serovar Bardo strain SA20113257 chromosome, complete genome	2	3064157-3064795	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,29,28	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP019404.1_3056023_3056785_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019404.1_3056765_3057815_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019404.1_3057811_3058291_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019404.1_3058290_3059001_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019404.1_3059019_3059331_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP019404.1_3059521_3059845_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019404.1_3059895_3060501_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019404.1_3060487_3061927_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019404.1_3061936_3062845_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019404.1_3063095_3064142_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP019404.1_3064891_3065185_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP019404.1_3065184_3066105_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP019404.1_3066101_3066752_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP019404.1_3066733_3067480_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP019404.1_3067490_3068549_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|183aa|down_5|NZ_CP019404.1_3068562_3069111_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|down_6|NZ_CP019404.1_3069107_3070667_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP019404.1_3070678_3073342_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP019404.1_3073785_3074739_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP019404.1_3074951_3075686_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001975305.1_ASM197530v1	NZ_CP019404	Salmonella enterica subsp. enterica serovar Bardo strain SA20113257 chromosome, complete genome	3	3081042-3082351	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,20	21	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_CP019404.1_3067490_3068549_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|183aa|up_8|NZ_CP019404.1_3068562_3069111_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|up_7|NZ_CP019404.1_3069107_3070667_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP019404.1_3070678_3073342_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP019404.1_3073785_3074739_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019404.1_3074951_3075686_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019404.1_3075761_3077474_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019404.1_3077473_3079273_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019404.1_3079696_3080059_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019404.1_3080146_3080944_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019404.1_3082647_3083319_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019404.1_3083454_3084753_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019404.1_3084835_3086473_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019404.1_3086700_3087501_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP019404.1_3088268_3088565_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP019404.1_3088530_3088887_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP019404.1_3088970_3091205_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP019404.1_3091256_3092552_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP019404.1_3092609_3095366_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP019404.1_3095409_3096552_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
