assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	1	533255-533353	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	CGCCATCCGGCAAAAAACCGAATGGCG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|158aa|up_9|NZ_CP019445.1_522168_522642_+	PRK09917, PRK09917, threonine/serine exporter	NA|152aa|up_8|NZ_CP019445.1_522695_523151_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|143aa|up_7|NZ_CP019445.1_523231_523660_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|180aa|up_6|NZ_CP019445.1_523825_524365_+	PRK02854, PRK02854, primosomal protein DnaT	NA|246aa|up_5|NZ_CP019445.1_524367_525105_+	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|763aa|up_4|NZ_CP019445.1_525323_527612_+	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase	NA|555aa|up_3|NZ_CP019445.1_527646_529311_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|718aa|up_2|NZ_CP019445.1_529650_531804_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|68aa|up_1|NZ_CP019445.1_531866_532070_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|319aa|up_0|NZ_CP019445.1_532080_533037_+	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional	NA|457aa|down_0|NZ_CP019445.1_533498_534869_-	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|174aa|down_1|NZ_CP019445.1_535204_535726_+	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein	NA|255aa|down_2|NZ_CP019445.1_535846_536611_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|down_3|NZ_CP019445.1_536657_537281_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|102aa|down_4|NZ_CP019445.1_537285_537591_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|91aa|down_5|NZ_CP019445.1_537577_537850_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|427aa|down_6|NZ_CP019445.1_537935_539216_+	COG2733, COG2733, Predicted membrane protein [Function unknown]	NA|355aa|down_7|NZ_CP019445.1_539368_540433_-	pfam11168, DUF2955, Protein of unknown function (DUF2955)	NA|356aa|down_8|NZ_CP019445.1_540422_541490_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|156aa|down_9|NZ_CP019445.1_541494_541962_-	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	2	564329-564464	2	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	CTGCATTGCCCGATGGCGCTTACGCTTATCGGGCCTACG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA|92aa|down_5|NZ_CP019445.1_570069_570345_+,NA|155aa|down_6|NZ_CP019445.1_570364_570829_-,NA|346aa|down_7|NZ_CP019445.1_570871_571909_-,NA|210aa|down_8|NZ_CP019445.1_572787_573417_+	NA|304aa|up_9|NZ_CP019445.1_551274_552186_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|480aa|up_8|NZ_CP019445.1_552185_553625_+	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|696aa|up_7|NZ_CP019445.1_553659_555747_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|322aa|up_6|NZ_CP019445.1_555875_556841_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|298aa|up_5|NZ_CP019445.1_556985_557879_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|317aa|up_4|NZ_CP019445.1_557881_558832_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|351aa|up_3|NZ_CP019445.1_558846_559899_-	pfam01032, FecCD, FecCD transport family	NA|336aa|up_2|NZ_CP019445.1_559895_560903_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_1|NZ_CP019445.1_560899_561727_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|715aa|up_0|NZ_CP019445.1_562164_564309_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|291aa|down_0|NZ_CP019445.1_565011_565884_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|296aa|down_1|NZ_CP019445.1_565873_566761_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|down_2|NZ_CP019445.1_566772_567597_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|358aa|down_3|NZ_CP019445.1_567601_568675_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|437aa|down_4|NZ_CP019445.1_568667_569978_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|92aa|down_5|NZ_CP019445.1_570069_570345_+	NA	NA|155aa|down_6|NZ_CP019445.1_570364_570829_-	NA	NA|346aa|down_7|NZ_CP019445.1_570871_571909_-	NA	NA|210aa|down_8|NZ_CP019445.1_572787_573417_+	NA	NA|3107aa|down_9|NZ_CP019445.1_573645_582966_+	pfam15645, Tox-PLDMTX, Dermonecrotoxin of the Papain-like fold
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	3	777113-778544	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,WYL	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Type I-E	GAAACACCCCCACATGCGTGGGGAAGAC,GAAACACCCCCACNTGCGTGGGGAAGAC,GAAACACCCCCACATGCGTGGGGAAGA	28,28,27	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	23,23,17	23	TypeI-E	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA|111aa|up_7|NZ_CP019445.1_768619_768952_-,NA	NA|202aa|up_9|NZ_CP019445.1_765301_765907_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|282aa|up_8|NZ_CP019445.1_765944_766790_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|111aa|up_7|NZ_CP019445.1_768619_768952_-	NA	NA|1402aa|up_6|NZ_CP019445.1_768944_773150_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|146aa|up_5|NZ_CP019445.1_773164_773602_-	pfam08786, DcrB, DcrB	NA|173aa|up_4|NZ_CP019445.1_773813_774332_+	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|164aa|up_3|NZ_CP019445.1_774400_774892_-	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|157aa|up_2|NZ_CP019445.1_775067_775538_-	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown]	NA|131aa|up_1|NZ_CP019445.1_775688_776081_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|247aa|up_0|NZ_CP019445.1_776166_776907_+	PRK06500, PRK06500, SDR family oxidoreductase	cas2|96aa|down_0|NZ_CP019445.1_778590_778878_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|253aa|down_1|NZ_CP019445.1_778855_779614_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NZ_CP019445.1_779629_780346_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP019445.1_780357_781392_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP019445.1_781420_782068_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|178aa|down_5|NZ_CP019445.1_782060_782594_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP019445.1_782631_784155_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|874aa|down_7|NZ_CP019445.1_784158_786780_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|264aa|down_8|NZ_CP019445.1_786905_787697_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|316aa|down_9|NZ_CP019445.1_788062_789010_+	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	4	809140-809259	4	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	TTCAGCCACACCGTTCCACATATTCACAGACCGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|242aa|up_9|NZ_CP019445.1_796486_797212_+	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional	NA|195aa|up_8|NZ_CP019445.1_797283_797868_+	PRK10147, phnH, phosphonate C-P lyase system protein PhnH	NA|112aa|up_7|NZ_CP019445.1_798216_798552_+	COG4551, COG4551, Predicted protein tyrosine phosphatase [General function prediction only]	NA|491aa|up_6|NZ_CP019445.1_798562_800035_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|855aa|up_5|NZ_CP019445.1_800224_802789_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|337aa|up_4|NZ_CP019445.1_804429_805440_+	COG4158, COG4158, Predicted ABC-type sugar transport system, permease component [General function prediction only]	NA|314aa|up_3|NZ_CP019445.1_805480_806422_+	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|229aa|up_2|NZ_CP019445.1_806469_807156_+	pfam07385, Lyx_isomer, D-lyxose isomerase	NA|287aa|up_1|NZ_CP019445.1_807167_808028_+	PRK06801, PRK06801, ketose 1,6-bisphosphate aldolase	NA|333aa|up_0|NZ_CP019445.1_808027_809026_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|816aa|down_0|NZ_CP019445.1_809264_811712_-	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|478aa|down_1|NZ_CP019445.1_811731_813165_-	PRK00654, glgA, glycogen synthase GlgA	NA|428aa|down_2|NZ_CP019445.1_813256_814540_-	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|666aa|down_3|NZ_CP019445.1_814533_816531_-	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|729aa|down_4|NZ_CP019445.1_816527_818714_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|369aa|down_5|NZ_CP019445.1_818971_820078_-	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|198aa|down_6|NZ_CP019445.1_820250_820844_+	PRK10739, PRK10739, YhgN family NAAT transporter	NA|244aa|down_7|NZ_CP019445.1_821094_821826_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|716aa|down_8|NZ_CP019445.1_822096_824244_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|361aa|down_9|NZ_CP019445.1_824495_825578_+	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	5	820981-821083	5	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	ATAAGGCGTAGCCGCCATCCGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA|832aa|down_3|NZ_CP019445.1_825606_828102_+	NA|229aa|up_9|NZ_CP019445.1_806469_807156_+	pfam07385, Lyx_isomer, D-lyxose isomerase	NA|287aa|up_8|NZ_CP019445.1_807167_808028_+	PRK06801, PRK06801, ketose 1,6-bisphosphate aldolase	NA|333aa|up_7|NZ_CP019445.1_808027_809026_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|816aa|up_6|NZ_CP019445.1_809264_811712_-	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|478aa|up_5|NZ_CP019445.1_811731_813165_-	PRK00654, glgA, glycogen synthase GlgA	NA|428aa|up_4|NZ_CP019445.1_813256_814540_-	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|666aa|up_3|NZ_CP019445.1_814533_816531_-	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|729aa|up_2|NZ_CP019445.1_816527_818714_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|369aa|up_1|NZ_CP019445.1_818971_820078_-	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|198aa|up_0|NZ_CP019445.1_820250_820844_+	PRK10739, PRK10739, YhgN family NAAT transporter	NA|244aa|down_0|NZ_CP019445.1_821094_821826_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|716aa|down_1|NZ_CP019445.1_822096_824244_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|361aa|down_2|NZ_CP019445.1_824495_825578_+	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	NA|832aa|down_3|NZ_CP019445.1_825606_828102_+	NA	NA|449aa|down_4|NZ_CP019445.1_828156_829503_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|354aa|down_5|NZ_CP019445.1_829514_830576_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|477aa|down_6|NZ_CP019445.1_830743_832174_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|653aa|down_7|NZ_CP019445.1_832742_834701_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|104aa|down_8|NZ_CP019445.1_834878_835190_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|550aa|down_9|NZ_CP019445.1_835186_836836_+	PRK09395, actP, cation/acetate symporter ActP
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	6	880179-880273	6	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	TGCCGGATGGCGCGTAAACGCTTATCCGGCCTGGG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|328aa|up_9|NZ_CP019445.1_869100_870084_+	PRK10754, PRK10754, NADPH:quinone reductase	NA|340aa|up_8|NZ_CP019445.1_870312_871332_-	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|208aa|up_7|NZ_CP019445.1_871613_872237_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|422aa|up_6|NZ_CP019445.1_872278_873544_-	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein	NA|172aa|up_5|NZ_CP019445.1_873875_874391_+	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur	NA|70aa|up_4|NZ_CP019445.1_874775_874985_-	PRK10428, PRK10428, hypothetical protein; Provisional	NA|445aa|up_3|NZ_CP019445.1_875118_876453_-	PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional	NA|205aa|up_2|NZ_CP019445.1_876527_877142_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|123aa|up_1|NZ_CP019445.1_877250_877619_-	COG0818, DgkA, Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]	NA|807aa|up_0|NZ_CP019445.1_877751_880172_+	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB	NA|291aa|down_0|NZ_CP019445.1_880386_881259_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|166aa|down_1|NZ_CP019445.1_881271_881769_-	PRK11655, ubiC, chorismate pyruvate lyase; Provisional	NA|314aa|down_2|NZ_CP019445.1_881950_882892_-	PRK10564, PRK10564, maltose operon protein MalM	NA|440aa|down_3|NZ_CP019445.1_883001_884321_-	PRK09360, lamB, maltoporin LamB	NA|370aa|down_4|NZ_CP019445.1_884491_885601_-	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA|397aa|down_5|NZ_CP019445.1_885971_887162_+	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA|515aa|down_6|NZ_CP019445.1_887286_888831_+	PRK10999, malF, maltose ABC transporter permease MalF	NA|297aa|down_7|NZ_CP019445.1_888845_889736_+	PRK10998, malG, maltose ABC transporter permease MalG	NA|137aa|down_8|NZ_CP019445.1_889811_890222_-	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|170aa|down_9|NZ_CP019445.1_890359_890869_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	7	1103747-1103845	7	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	CAGCCGCCATCCGGCAAACAGCCCGCAC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|877aa|up_9|NZ_CP019445.1_1091796_1094427_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|172aa|up_8|NZ_CP019445.1_1094557_1095073_-	PRK00117, recX, recombination regulator RecX; Reviewed	NA|355aa|up_7|NZ_CP019445.1_1095140_1096205_-	PRK09354, recA, recombinase A; Provisional	NA|166aa|up_6|NZ_CP019445.1_1096295_1096793_-	PRK03661, PRK03661, nicotinamide-nucleotide amidase	NA|293aa|up_5|NZ_CP019445.1_1096979_1097858_-	cd01137, PsaA, Metal binding protein PsaA	NA|288aa|up_4|NZ_CP019445.1_1097869_1098733_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|221aa|up_3|NZ_CP019445.1_1098729_1099392_-	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|361aa|up_2|NZ_CP019445.1_1099618_1100701_-	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|121aa|up_1|NZ_CP019445.1_1102495_1102858_+	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|260aa|up_0|NZ_CP019445.1_1102875_1103655_+	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|120aa|down_0|NZ_CP019445.1_1103891_1104251_+	PRK10234, PRK10234, transcriptional regulator GutM	NA|258aa|down_1|NZ_CP019445.1_1104318_1105092_+	PRK10434, srlR, DNA-binding transcriptional repressor	NA|322aa|down_2|NZ_CP019445.1_1105084_1106050_+	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|515aa|down_3|NZ_CP019445.1_1106046_1107591_-	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|481aa|down_4|NZ_CP019445.1_1107742_1109185_+	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|378aa|down_5|NZ_CP019445.1_1109181_1110315_+	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|758aa|down_6|NZ_CP019445.1_1110259_1112533_-	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|717aa|down_7|NZ_CP019445.1_1112537_1114688_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|182aa|down_8|NZ_CP019445.1_1114723_1115269_-	PRK10330, PRK10330, electron transport protein HydN	NA|338aa|down_9|NZ_CP019445.1_1115402_1116416_-	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	8	1361116-1361210	8	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	GCCGGATGGCGGCGTTGCCTTATCCGGCCTACG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|198aa|up_9|NZ_CP019445.1_1351784_1352378_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|379aa|up_8|NZ_CP019445.1_1352370_1353507_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|369aa|up_7|NZ_CP019445.1_1353587_1354694_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|239aa|up_6|NZ_CP019445.1_1355025_1355742_-	PRK10626, PRK10626, hypothetical protein; Provisional	NA|109aa|up_5|NZ_CP019445.1_1355798_1356125_-	PRK11702, PRK11702, hypothetical protein; Provisional	NA|240aa|up_4|NZ_CP019445.1_1356124_1356844_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|351aa|up_3|NZ_CP019445.1_1356986_1358039_+	PRK10880, PRK10880, adenine DNA glycosylase	NA|92aa|up_2|NZ_CP019445.1_1358063_1358339_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|361aa|up_1|NZ_CP019445.1_1358443_1359526_+	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|418aa|up_0|NZ_CP019445.1_1359771_1361025_+	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|277aa|down_0|NZ_CP019445.1_1361222_1362053_-	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG	NA|180aa|down_1|NZ_CP019445.1_1362030_1362570_-	pfam03802, CitX, Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase	NA|509aa|down_2|NZ_CP019445.1_1362566_1364093_-	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion]	NA|292aa|down_3|NZ_CP019445.1_1364103_1364979_-	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit	NA|98aa|down_4|NZ_CP019445.1_1364975_1365269_-	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional	NA|340aa|down_5|NZ_CP019445.1_1365287_1366307_-	cd02169, Citrate_lyase_ligase, Citrate lyase ligase	NA|289aa|down_6|NZ_CP019445.1_1366323_1367190_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|455aa|down_7|NZ_CP019445.1_1367212_1368577_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|545aa|down_8|NZ_CP019445.1_1368912_1370547_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|231aa|down_9|NZ_CP019445.1_1370536_1371229_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	9	2306965-2307044	9	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	CGCACTCAACCCGTAGGCCGGATAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA|240aa|down_7|NZ_CP019445.1_2314189_2314909_+	NA|304aa|up_9|NZ_CP019445.1_2288340_2289252_-	PRK00321, rdgC, recombination associated protein; Reviewed	NA|303aa|up_8|NZ_CP019445.1_2289351_2290260_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|1047aa|up_7|NZ_CP019445.1_2290860_2294001_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|up_6|NZ_CP019445.1_2293997_2295200_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|up_5|NZ_CP019445.1_2295397_2296087_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|433aa|up_4|NZ_CP019445.1_2296108_2297407_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|up_3|NZ_CP019445.1_2297814_2299134_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|450aa|up_2|NZ_CP019445.1_2299219_2300569_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|up_1|NZ_CP019445.1_2300913_2302731_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|456aa|up_0|NZ_CP019445.1_2305483_2306851_+	pfam13163, DUF3999, Protein of unknown function (DUF3999)	NA|194aa|down_0|NZ_CP019445.1_2307088_2307670_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|355aa|down_1|NZ_CP019445.1_2307763_2308828_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|376aa|down_2|NZ_CP019445.1_2308986_2310114_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|111aa|down_3|NZ_CP019445.1_2310135_2310468_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|616aa|down_4|NZ_CP019445.1_2310495_2312343_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|324aa|down_5|NZ_CP019445.1_2312353_2313325_+	PRK13022, secF, protein translocase subunit SecF	NA|208aa|down_6|NZ_CP019445.1_2313551_2314175_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|240aa|down_7|NZ_CP019445.1_2314189_2314909_+	NA	NA|440aa|down_8|NZ_CP019445.1_2314972_2316292_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|523aa|down_9|NZ_CP019445.1_2316460_2318029_+	cd12215, ChiC_BD, Chitin-binding domain of chitinase C
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	10	2340171-2340269	10	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	GCATGTGGATGCGGTGGCAAATGCCTGATGGCGCT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|466aa|up_9|NZ_CP019445.1_2331874_2333272_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|228aa|up_8|NZ_CP019445.1_2333281_2333965_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|294aa|up_7|NZ_CP019445.1_2334139_2335021_-	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional	NA|181aa|up_6|NZ_CP019445.1_2335313_2335856_-	PRK11530, PRK11530, hypothetical protein; Provisional	NA|150aa|up_5|NZ_CP019445.1_2336009_2336459_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|368aa|up_4|NZ_CP019445.1_2336461_2337565_+	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|157aa|up_3|NZ_CP019445.1_2337654_2338125_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|140aa|up_2|NZ_CP019445.1_2338144_2338564_+	PRK00202, nusB, transcription antitermination factor NusB	NA|326aa|up_1|NZ_CP019445.1_2338639_2339617_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|174aa|up_0|NZ_CP019445.1_2339594_2340116_+	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional	NA|325aa|down_0|NZ_CP019445.1_2340355_2341330_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|621aa|down_1|NZ_CP019445.1_2341391_2343254_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|300aa|down_2|NZ_CP019445.1_2343283_2344183_-	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|81aa|down_3|NZ_CP019445.1_2344183_2344426_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|483aa|down_4|NZ_CP019445.1_2344630_2346079_+	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|198aa|down_5|NZ_CP019445.1_2346353_2346947_-	PRK11574, PRK11574, protein deglycase YajL	NA|304aa|down_6|NZ_CP019445.1_2346909_2347821_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|164aa|down_7|NZ_CP019445.1_2347959_2348451_+	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|454aa|down_8|NZ_CP019445.1_2348490_2349852_-	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|110aa|down_9|NZ_CP019445.1_2350896_2351226_-	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	11	2960898-2961036	11	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	GGTTCAAACTCCACACCGTAGGCCCGATAAGCGCAGCGCCATCGGGCAT	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|76aa|up_9|NZ_CP019445.1_2951410_2951638_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|62aa|up_8|NZ_CP019445.1_2952244_2952430_+	COG3729, GsiB, General stress protein [General function prediction only]	NA|209aa|up_7|NZ_CP019445.1_2952613_2953240_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|132aa|up_6|NZ_CP019445.1_2953236_2953632_-	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|328aa|up_5|NZ_CP019445.1_2954038_2955022_+	cd20002, PBP1_LsrB_Quorum_Sensing-like, ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein	NA|500aa|up_4|NZ_CP019445.1_2955129_2956629_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|329aa|up_3|NZ_CP019445.1_2956621_2957608_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|318aa|up_2|NZ_CP019445.1_2957609_2958563_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|546aa|up_1|NZ_CP019445.1_2958579_2960217_+	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases	NA|201aa|up_0|NZ_CP019445.1_2960213_2960816_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|1321aa|down_0|NZ_CP019445.1_2961045_2965008_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|503aa|down_1|NZ_CP019445.1_2965426_2966935_+	PRK15419, PRK15419, sodium/proline symporter PutP	NA|143aa|down_2|NZ_CP019445.1_2967034_2967463_+	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|395aa|down_3|NZ_CP019445.1_2967502_2968687_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|278aa|down_4|NZ_CP019445.1_2968968_2969802_+	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein	NA|376aa|down_5|NZ_CP019445.1_2969851_2970979_+	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional	NA|428aa|down_6|NZ_CP019445.1_2970981_2972265_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|313aa|down_7|NZ_CP019445.1_2974898_2975837_+	PRK15469, ghrA, glyoxylate/hydroxypyruvate reductase GhrA	NA|246aa|down_8|NZ_CP019445.1_2975919_2976657_+	PRK09248, PRK09248, putative hydrolase; Validated	NA|187aa|down_9|NZ_CP019445.1_2976677_2977238_+	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only]
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	12	3079043-3079256	2	PILER-CR	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	TTCAGGCACAGTGCACATTGCCGGATGGCGGCGTACCGCCTTATCCGGCCT	51	1	4	3079201-3079238|3079201-3079238|3079201-3079238|3079201-3079238	NZ_CP019445.1_2072078-2072115|NZ_CP019445.1_2072277-2072314|NZ_CP019445.1_2072377-2072414|NZ_CP019445.1_3078365-3078402	NA	2	2	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA|337aa|down_8|NZ_CP019445.1_3089332_3090343_+,NA|117aa|down_9|NZ_CP019445.1_3090576_3090927_-	NA|343aa|up_9|NZ_CP019445.1_3066444_3067473_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|422aa|up_8|NZ_CP019445.1_3067469_3068735_+	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|392aa|up_7|NZ_CP019445.1_3068731_3069907_+	TIGR01789, lycopene_cyclase, lycopene cyclase	NA|494aa|up_6|NZ_CP019445.1_3069899_3071381_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|311aa|up_5|NZ_CP019445.1_3071377_3072310_+	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|184aa|up_4|NZ_CP019445.1_3072242_3072794_-	PLN02601, PLN02601, beta-carotene hydroxylase	NA|349aa|up_3|NZ_CP019445.1_3072919_3073966_-	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed	NA|263aa|up_2|NZ_CP019445.1_3073965_3074754_-	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed	NA|413aa|up_1|NZ_CP019445.1_3076992_3078231_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|164aa|up_0|NZ_CP019445.1_3078548_3079040_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|487aa|down_0|NZ_CP019445.1_3080509_3081970_-	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|225aa|down_1|NZ_CP019445.1_3081966_3082641_-	PRK10816, PRK10816, two-component system response regulator PhoP	NA|457aa|down_2|NZ_CP019445.1_3082776_3084147_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|210aa|down_3|NZ_CP019445.1_3084166_3084796_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|369aa|down_4|NZ_CP019445.1_3084870_3085977_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|153aa|down_5|NZ_CP019445.1_3086032_3086491_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|216aa|down_6|NZ_CP019445.1_3086508_3087156_-	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE	NA|417aa|down_7|NZ_CP019445.1_3087343_3088594_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|337aa|down_8|NZ_CP019445.1_3089332_3090343_+	NA	NA|117aa|down_9|NZ_CP019445.1_3090576_3090927_-	NA
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	13	3154248-3154344	12	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	CGCCTTATCCGGCCTACAAAAGCGGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA|26aa|up_5|NZ_CP019445.1_3150912_3150990_-,NA|102aa|up_2|NZ_CP019445.1_3152744_3153050_+,NA	NA|192aa|up_9|NZ_CP019445.1_3145853_3146429_-	PRK10345, PRK10345, PhoP regulatory network protein YrbL	NA|80aa|up_8|NZ_CP019445.1_3146611_3146851_-	pfam06183, DinI, DinI-like family	NA|528aa|up_7|NZ_CP019445.1_3147209_3148793_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|608aa|up_6|NZ_CP019445.1_3148992_3150816_-	cd01948, EAL, EAL domain	NA|26aa|up_5|NZ_CP019445.1_3150912_3150990_-	NA	NA|343aa|up_4|NZ_CP019445.1_3151089_3152118_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|82aa|up_3|NZ_CP019445.1_3152420_3152666_+	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|102aa|up_2|NZ_CP019445.1_3152744_3153050_+	NA	NA|116aa|up_1|NZ_CP019445.1_3153046_3153394_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|236aa|up_0|NZ_CP019445.1_3153514_3154222_+	PRK06186, PRK06186, hypothetical protein; Validated	NA|395aa|down_0|NZ_CP019445.1_3154408_3155593_-	cd17409, MFS_NIMT_like, 2-nitroimidazole transporter and similar proteins of the Major Facilitator Superfamily of transporters	NA|262aa|down_1|NZ_CP019445.1_3155692_3156478_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|275aa|down_2|NZ_CP019445.1_3156681_3157506_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|274aa|down_3|NZ_CP019445.1_3157508_3158330_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|247aa|down_4|NZ_CP019445.1_3158329_3159070_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|231aa|down_5|NZ_CP019445.1_3159059_3159752_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|149aa|down_6|NZ_CP019445.1_3159734_3160181_-	COG2707, COG2707, Predicted membrane protein [Function unknown]	NA|169aa|down_7|NZ_CP019445.1_3160192_3160699_-	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|225aa|down_8|NZ_CP019445.1_3160823_3161498_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|109aa|down_9|NZ_CP019445.1_3161725_3162052_+	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	14	3259179-3259310	13	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|495aa|up_9|NZ_CP019445.1_3241876_3243361_+	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|249aa|up_8|NZ_CP019445.1_3243378_3244125_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|424aa|up_7|NZ_CP019445.1_3244099_3245371_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_6|NZ_CP019445.1_3245367_3246588_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_5|NZ_CP019445.1_3246601_3247018_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|337aa|up_4|NZ_CP019445.1_3247118_3248129_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_3|NZ_CP019445.1_3248196_3248433_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_2|NZ_CP019445.1_3248745_3250158_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|419aa|up_1|NZ_CP019445.1_3251169_3252426_+	TIGR04414, glycosyltransferase_tibC, autotransporter strand-loop-strand O-heptosyltransferase	NA|2177aa|up_0|NZ_CP019445.1_3252457_3258988_+	NF033177, auto_Ag43, autotransporter adhesin Ag43	NA|458aa|down_0|NZ_CP019445.1_3259467_3260841_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|213aa|down_1|NZ_CP019445.1_3261109_3261748_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP019445.1_3261819_3262968_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|399aa|down_3|NZ_CP019445.1_3263265_3264462_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|304aa|down_4|NZ_CP019445.1_3264574_3265486_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP019445.1_3265504_3266530_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP019445.1_3266827_3266917_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|390aa|down_7|NZ_CP019445.1_3267083_3268253_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|282aa|down_8|NZ_CP019445.1_3268297_3269143_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|115aa|down_9|NZ_CP019445.1_3269477_3269822_+	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	15	3387040-3387145	14	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	TTTCGTAGGCCGGATAAGCGCCAGCGCCATCCGGCAA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA,NA	NA|526aa|up_9|NZ_CP019445.1_3375838_3377416_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|309aa|up_8|NZ_CP019445.1_3377476_3378403_+	PRK00971, PRK00971, glutaminase; Provisional	NA|121aa|up_7|NZ_CP019445.1_3378402_3378765_+	pfam13811, DUF4186, Domain of unknown function (DUF4186)	NA|479aa|up_6|NZ_CP019445.1_3378873_3380310_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|325aa|up_5|NZ_CP019445.1_3380522_3381497_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|175aa|up_4|NZ_CP019445.1_3381577_3382102_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|484aa|up_3|NZ_CP019445.1_3382219_3383671_+	PRK03643, PRK03643, tagaturonate reductase	NA|305aa|up_2|NZ_CP019445.1_3383972_3384887_+	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|474aa|up_1|NZ_CP019445.1_3385038_3386460_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|160aa|up_0|NZ_CP019445.1_3386551_3387031_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|522aa|down_0|NZ_CP019445.1_3387203_3388769_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|413aa|down_1|NZ_CP019445.1_3389016_3390255_-	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]	NA|488aa|down_2|NZ_CP019445.1_3390569_3392033_-	PRK15049, PRK15049, L-asparagine permease	NA|339aa|down_3|NZ_CP019445.1_3392494_3393511_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|374aa|down_4|NZ_CP019445.1_3393507_3394629_+	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	NA|439aa|down_5|NZ_CP019445.1_3394693_3396010_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|311aa|down_6|NZ_CP019445.1_3396024_3396957_+	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|170aa|down_7|NZ_CP019445.1_3396967_3397477_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|308aa|down_8|NZ_CP019445.1_3397486_3398410_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|258aa|down_9|NZ_CP019445.1_3398393_3399167_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_001975225.1_ASM197522v1	NZ_CP019445	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 chromosome, complete genome	16	3635313-3635396	15	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	Orphan	TGGTAATTTGCTGGTAATCTGCTGGTACA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,WYL,csa3,DinG	NA|258aa|up_4|NZ_CP019445.1_3631659_3632433_-,NA|68aa|up_3|NZ_CP019445.1_3632432_3632636_-,NA|183aa|up_2|NZ_CP019445.1_3632638_3633187_-,NA|98aa|up_1|NZ_CP019445.1_3633183_3633477_-,NA|69aa|down_4|NZ_CP019445.1_3638694_3638901_+,NA|56aa|down_5|NZ_CP019445.1_3639043_3639211_+,NA|95aa|down_8|NZ_CP019445.1_3640607_3640892_+	NA|122aa|up_9|NZ_CP019445.1_3629896_3630262_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_8|NZ_CP019445.1_3630258_3630549_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|56aa|up_7|NZ_CP019445.1_3630541_3630709_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_6|NZ_CP019445.1_3630708_3631164_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|94aa|up_5|NZ_CP019445.1_3631376_3631658_-	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain	NA|258aa|up_4|NZ_CP019445.1_3631659_3632433_-	NA	NA|68aa|up_3|NZ_CP019445.1_3632432_3632636_-	NA	NA|183aa|up_2|NZ_CP019445.1_3632638_3633187_-	NA	NA|98aa|up_1|NZ_CP019445.1_3633183_3633477_-	NA	NA|479aa|up_0|NZ_CP019445.1_3633476_3634913_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|273aa|down_0|NZ_CP019445.1_3635916_3636735_-	smart00470, ParB, ParB-like nuclease domain	NA|74aa|down_1|NZ_CP019445.1_3636820_3637042_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|76aa|down_2|NZ_CP019445.1_3637081_3637309_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|235aa|down_3|NZ_CP019445.1_3637420_3638125_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_4|NZ_CP019445.1_3638694_3638901_+	NA	NA|56aa|down_5|NZ_CP019445.1_3639043_3639211_+	NA	NA|70aa|down_6|NZ_CP019445.1_3639207_3639417_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|371aa|down_7|NZ_CP019445.1_3639487_3640600_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|95aa|down_8|NZ_CP019445.1_3640607_3640892_+	NA	NA|305aa|down_9|NZ_CP019445.1_3640901_3641816_+	PRK09846, recT, recombination protein RecT
