assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	1	439140-439241	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|70aa|up_8|NZ_CP018768.1_430699_430909_-,NA|128aa|up_6|NZ_CP018768.1_431733_432117_-,NA|33aa|up_0|NZ_CP018768.1_438364_438463_+,NA|221aa|down_1|NZ_CP018768.1_440331_440994_-,NA|179aa|down_7|NZ_CP018768.1_447085_447622_-	NA|84aa|up_9|NZ_CP018768.1_430409_430661_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP018768.1_430699_430909_-	NA	NA|194aa|up_7|NZ_CP018768.1_431086_431668_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP018768.1_431733_432117_-	NA	NA|209aa|up_5|NZ_CP018768.1_432386_433013_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP018768.1_433456_434980_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP018768.1_434995_435565_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP018768.1_436056_436812_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP018768.1_436891_438280_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP018768.1_438364_438463_+	NA	NA|319aa|down_0|NZ_CP018768.1_439257_440214_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP018768.1_440331_440994_-	NA	NA|136aa|down_2|NZ_CP018768.1_441136_441544_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP018768.1_442056_442635_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP018768.1_442634_443903_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP018768.1_443940_445407_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP018768.1_445431_446973_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP018768.1_447085_447622_-	NA	NA|235aa|down_8|NZ_CP018768.1_448013_448718_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP018768.1_449116_449389_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	2	794451-794533	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|69aa|up_9|NZ_CP018768.1_781064_781271_+,NA|34aa|down_1|NZ_CP018768.1_796188_796290_+,NA|52aa|down_8|NZ_CP018768.1_804136_804292_+	NA|69aa|up_9|NZ_CP018768.1_781064_781271_+	NA	NA|237aa|up_8|NZ_CP018768.1_781358_782069_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP018768.1_782052_783057_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP018768.1_783530_785471_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP018768.1_785740_787624_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP018768.1_787635_789417_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP018768.1_789638_790616_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP018768.1_790608_792123_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP018768.1_792362_793421_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP018768.1_793759_794302_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP018768.1_795180_796098_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP018768.1_796188_796290_+	NA	NA|502aa|down_2|NZ_CP018768.1_796367_797873_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP018768.1_798213_798714_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP018768.1_798733_799600_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP018768.1_800400_800799_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP018768.1_800761_802867_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP018768.1_802984_803956_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP018768.1_804136_804292_+	NA	NA|324aa|down_9|NZ_CP018768.1_804330_805302_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	3	835398-835476	3	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,RT,WYL	NA|35aa|up_7|NZ_CP018768.1_826274_826379_+,NA|36aa|up_5|NZ_CP018768.1_827811_827919_+,NA	NA|191aa|up_9|NZ_CP018768.1_822715_823288_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP018768.1_823701_826233_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP018768.1_826274_826379_+	NA	NA|370aa|up_6|NZ_CP018768.1_826547_827658_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP018768.1_827811_827919_+	NA	NA|280aa|up_4|NZ_CP018768.1_828066_828906_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP018768.1_829079_829730_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP018768.1_829726_829963_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP018768.1_830231_832217_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP018768.1_832224_835071_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP018768.1_835734_836667_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP018768.1_836672_837512_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP018768.1_837519_838005_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP018768.1_838012_839452_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP018768.1_839518_840454_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP018768.1_841339_842251_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP018768.1_842247_843243_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP018768.1_843353_844298_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP018768.1_844861_845449_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP018768.1_845691_846594_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	4	840853-841122	1	CRT	no	cas3	csa3,cas3,DEDDh,DinG,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840889-840910|840947-840969|840947-840969|840947-840969|840947-840969|840947-840969|840947-840969|840947-840969|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841006-841027|841064-841086|841064-841086|841064-841086|841064-841086|841064-841086|841064-841086|841064-841086	NZ_CP018768.1_201060-201039|NZ_CP018768.1_324136-324115|NZ_CP018768.1_667344-667323|NZ_CP018768.1_793492-793513|NZ_CP018768.1_884210-884231|NZ_CP018768.1_1402910-1402889|NZ_CP018768.1_1491441-1491462|NZ_CP018768.1_1672615-1672636|NZ_CP018768.1_1687170-1687149|NZ_CP018768.1_2004307-2004328|NZ_CP018768.1_954442-954463|NZ_CP018768.1_1706877-1706898|NZ_CP018768.1_1707110-1707131|NZ_CP018768.1_794464-794442|NZ_CP018768.1_794742-794720|NZ_CP018768.1_1403027-1403005|NZ_CP018768.1_2004365-2004387|NZ_CP018768.1_2344929-2344951|NZ_CP018768.1_1491324-1491346|NZ_CP018768.1_2104706-2104728|NZ_CP018768.1_201060-201039|NZ_CP018768.1_324136-324115|NZ_CP018768.1_667344-667323|NZ_CP018768.1_793492-793513|NZ_CP018768.1_884210-884231|NZ_CP018768.1_1402910-1402889|NZ_CP018768.1_1491441-1491462|NZ_CP018768.1_1672615-1672636|NZ_CP018768.1_1687170-1687149|NZ_CP018768.1_2004307-2004328|NZ_CP018768.1_954442-954463|NZ_CP018768.1_1706877-1706898|NZ_CP018768.1_1707110-1707131|NZ_CP018768.1_794464-794442|NZ_CP018768.1_794742-794720|NZ_CP018768.1_1403027-1403005|NZ_CP018768.1_2004365-2004387|NZ_CP018768.1_2344929-2344951|NZ_CP018768.1_1491324-1491346|NZ_CP018768.1_2104706-2104728	NA	4	4	Unclear	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP018768.1_828066_828906_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP018768.1_829079_829730_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP018768.1_829726_829963_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP018768.1_830231_832217_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP018768.1_832224_835071_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP018768.1_835734_836667_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP018768.1_836672_837512_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP018768.1_837519_838005_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP018768.1_838012_839452_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP018768.1_839518_840454_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP018768.1_841339_842251_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP018768.1_842247_843243_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP018768.1_843353_844298_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP018768.1_844861_845449_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP018768.1_845691_846594_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP018768.1_847296_847926_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP018768.1_848738_849752_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP018768.1_849804_850815_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP018768.1_850953_852144_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP018768.1_852265_853027_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	5	884137-884218	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	884161-884194	NZ_CP018768.1_1403018-1402985	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP018768.1_877239_877821_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP018768.1_877893_878511_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP018768.1_878665_879160_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP018768.1_879558_879981_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP018768.1_880128_880845_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP018768.1_880927_881467_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP018768.1_881617_881938_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP018768.1_882081_882438_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP018768.1_882595_882976_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP018768.1_883154_884033_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP018768.1_884829_885216_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP018768.1_885208_885505_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP018768.1_885754_886780_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP018768.1_886772_887468_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP018768.1_887485_888307_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP018768.1_888660_888855_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP018768.1_889088_889940_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP018768.1_890267_891029_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP018768.1_891126_892434_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP018768.1_892539_893790_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	6	1706970-1707117	1	PILER-CR	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	3	1707077-1707098|1707077-1707098|1707077-1707098	NZ_CP018768.1_1191386-1191365|NZ_CP018768.1_2104594-2104615|NZ_CP018768.1_2104711-2104732	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA,NA|49aa|down_3|NZ_CP018768.1_1711107_1711254_-,NA|43aa|down_8|NZ_CP018768.1_1714290_1714419_-	NA|208aa|up_9|NZ_CP018768.1_1695639_1696263_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP018768.1_1696262_1697531_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP018768.1_1697542_1698466_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP018768.1_1698468_1699107_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP018768.1_1699391_1699700_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP018768.1_1699714_1700143_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP018768.1_1700146_1700407_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP018768.1_1700469_1703100_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP018768.1_1703442_1705920_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP018768.1_1705921_1706590_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP018768.1_1707284_1708403_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP018768.1_1708403_1709546_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP018768.1_1709857_1710871_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP018768.1_1711107_1711254_-	NA	NA|61aa|down_4|NZ_CP018768.1_1711293_1711476_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP018768.1_1711575_1711998_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP018768.1_1712082_1713357_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP018768.1_1713517_1714291_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP018768.1_1714290_1714419_-	NA	NA|589aa|down_9|NZ_CP018768.1_1714751_1716518_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	7	2104625-2104706	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2104649-2104682|2104649-2104682|2104649-2104682|2104649-2104682|2104649-2104682	NZ_CP018768.1_835397-835430|NZ_CP018768.1_1191276-1191243|NZ_CP018768.1_1799275-1799242|NZ_CP018768.1_1407359-1407392|NZ_CP018768.1_2794166-2794199	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|49aa|up_7|NZ_CP018768.1_2096931_2097078_+,NA|61aa|up_5|NZ_CP018768.1_2097330_2097513_+,NA	NA|239aa|up_9|NZ_CP018768.1_2095275_2095992_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_8|NZ_CP018768.1_2096003_2096858_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|49aa|up_7|NZ_CP018768.1_2096931_2097078_+	NA	NA|62aa|up_6|NZ_CP018768.1_2097074_2097260_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NZ_CP018768.1_2097330_2097513_+	NA	NA|238aa|up_4|NZ_CP018768.1_2097591_2098305_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP018768.1_2098495_2099533_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP018768.1_2100651_2101668_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP018768.1_2101689_2102745_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP018768.1_2103180_2104404_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP018768.1_2104847_2106155_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP018768.1_2106694_2108311_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP018768.1_2108386_2108671_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP018768.1_2108845_2109589_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP018768.1_2109613_2110873_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP018768.1_2111069_2111696_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP018768.1_2112056_2112842_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP018768.1_2113442_2113577_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP018768.1_2113812_2114376_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP018768.1_2114378_2114522_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	8	2235399-2235479	6	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|77aa|up_5|NZ_CP018768.1_2230273_2230504_-,NA|364aa|up_0|NZ_CP018768.1_2234290_2235382_+,NA|35aa|down_0|NZ_CP018768.1_2235814_2235919_-,NA|53aa|down_1|NZ_CP018768.1_2236598_2236757_+	NA|148aa|up_9|NZ_CP018768.1_2225195_2225639_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|NZ_CP018768.1_2225838_2226252_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|440aa|up_7|NZ_CP018768.1_2226744_2228064_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|458aa|up_6|NZ_CP018768.1_2228228_2229602_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP018768.1_2230273_2230504_-	NA	NA|313aa|up_4|NZ_CP018768.1_2230534_2231473_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP018768.1_2231908_2232574_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP018768.1_2232725_2233046_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP018768.1_2233047_2234025_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP018768.1_2234290_2235382_+	NA	NA|35aa|down_0|NZ_CP018768.1_2235814_2235919_-	NA	NA|53aa|down_1|NZ_CP018768.1_2236598_2236757_+	NA	NA|286aa|down_2|NZ_CP018768.1_2237414_2238272_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP018768.1_2238339_2239122_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP018768.1_2239353_2241159_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP018768.1_2241839_2243378_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP018768.1_2243412_2245545_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP018768.1_2245556_2245991_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP018768.1_2245990_2247097_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP018768.1_2247415_2254861_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	9	2247720-2247805	7	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|364aa|up_9|NZ_CP018768.1_2234290_2235382_+,NA|35aa|up_8|NZ_CP018768.1_2235814_2235919_-,NA|53aa|up_7|NZ_CP018768.1_2236598_2236757_+,NA	NA|364aa|up_9|NZ_CP018768.1_2234290_2235382_+	NA	NA|35aa|up_8|NZ_CP018768.1_2235814_2235919_-	NA	NA|53aa|up_7|NZ_CP018768.1_2236598_2236757_+	NA	NA|286aa|up_6|NZ_CP018768.1_2237414_2238272_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP018768.1_2238339_2239122_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP018768.1_2239353_2241159_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP018768.1_2241839_2243378_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP018768.1_2243412_2245545_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP018768.1_2245556_2245991_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP018768.1_2245990_2247097_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP018768.1_2255138_2256494_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP018768.1_2256520_2257453_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP018768.1_2257454_2258264_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP018768.1_2258452_2259361_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP018768.1_2265601_2266666_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP018768.1_2266813_2268256_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP018768.1_2268578_2269052_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP018768.1_2269150_2270494_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP018768.1_2270670_2271354_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP018768.1_2271372_2272560_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001975045.1_ASM197504v1	NZ_CP018768	Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome	10	2355758-2355838	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813|2355783-2355813	NZ_CP018768.1_848141-848171|NZ_CP018768.1_848197-848227|NZ_CP018768.1_102397-102427|NZ_CP018768.1_400431-400401|NZ_CP018768.1_667408-667378|NZ_CP018768.1_848253-848283|NZ_CP018768.1_884473-884503|NZ_CP018768.1_1050443-1050473|NZ_CP018768.1_1196874-1196844|NZ_CP018768.1_1402974-1402944|NZ_CP018768.1_1491377-1491407|NZ_CP018768.1_1491493-1491523|NZ_CP018768.1_1687233-1687203|NZ_CP018768.1_2002959-2002989|NZ_CP018768.1_2344982-2345012|NZ_CP018768.1_2520567-2520597	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,RT,WYL	NA|55aa|up_9|NZ_CP018768.1_2346291_2346456_+,NA|106aa|up_8|NZ_CP018768.1_2346700_2347018_+,NA|84aa|up_5|NZ_CP018768.1_2352139_2352391_+,NA|62aa|up_0|NZ_CP018768.1_2355530_2355716_+,NA	NA|55aa|up_9|NZ_CP018768.1_2346291_2346456_+	NA	NA|106aa|up_8|NZ_CP018768.1_2346700_2347018_+	NA	NA|1056aa|up_7|NZ_CP018768.1_2347201_2350369_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP018768.1_2350485_2351751_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP018768.1_2352139_2352391_+	NA	NA|255aa|up_4|NZ_CP018768.1_2352382_2353147_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP018768.1_2353308_2353749_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP018768.1_2353741_2354953_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP018768.1_2355054_2355405_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP018768.1_2355530_2355716_+	NA	NA|341aa|down_0|NZ_CP018768.1_2355981_2357004_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP018768.1_2357023_2357623_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP018768.1_2357629_2357863_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP018768.1_2357868_2358315_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP018768.1_2358328_2358814_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP018768.1_2358810_2360070_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP018768.1_2360132_2360627_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP018768.1_2360628_2361135_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP018768.1_2361165_2362170_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP018768.1_2362339_2362945_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
