The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013916	Sphingomonas sp. LK11 chromosome, complete genome	3781071	24578	109667	3781071	portal,terminase,protease,integrase,tail,transposase,head,capsid	uncultured_Caudovirales_phage(14.29%)	90	36642:36659	111554:111569
WP_076713804.1|24578_25742_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_076713806.1|25754_26522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007407063.1|26767_27199_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_056433483.1|27203_27896_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_076713808.1|28261_29161_-	sugar kinase	NA	NA	NA	NA	NA
WP_172839590.1|29312_30503_+	mannonate dehydratase	NA	NA	NA	NA	NA
WP_076713810.1|30499_31912_+	glucuronate isomerase	NA	NA	NA	NA	NA
WP_156884332.1|31953_33285_+	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	33.8	1.9e-44
WP_076717677.1|33423_33747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172839591.1|33783_35331_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_076713815.1|35783_38693_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.8	2.2e-42
36642:36659	attL	AACCCGGTCACGGGCGAG	NA	NA	NA	NA
WP_076713817.1|38776_39982_-	carbohydrate porin	NA	NA	NA	NA	NA
36642:36659	attL	AACCCGGTCACGGGCGAG	NA	NA	NA	NA
WP_076713820.1|40235_42002_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	5.8e-09
WP_156884132.1|42188_42945_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_083706493.1|43345_43498_+	DUF4142 domain-containing protein	NA	NA	NA	NA	NA
WP_076713824.1|49882_50875_-	FAH family protein	NA	NA	NA	NA	NA
WP_076713826.1|50945_52469_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
WP_056431939.1|52618_53350_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076717679.1|53649_54513_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_172839592.1|54541_55330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076713828.1|55341_56487_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_056431841.1|56670_57045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713829.1|57113_58910_-	dihydroxy-acid dehydratase family protein	NA	NA	NA	NA	NA
WP_172839593.1|58923_60018_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_056431830.1|60201_61512_+	sugar MFS transporter	NA	NA	NA	NA	NA
WP_172839594.1|61651_62263_+	DUF1826 domain-containing protein	NA	NA	NA	NA	NA
WP_083706716.1|62328_63441_+	DUF1624 domain-containing protein	NA	NA	NA	NA	NA
WP_076713831.1|63474_64596_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_083706495.1|64592_66428_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076713833.1|66472_67036_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_083706717.1|67044_67476_-	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_083706496.1|67484_67772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713837.1|67827_68256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884133.1|68503_69409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076717688.1|69629_70865_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q8W6M6	Sinorhizobium_phage	39.7	1.5e-67
WP_076713841.1|71102_72713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713843.1|72712_72976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713845.1|72987_73764_-	DNA adenine methylase	NA	A0A219VHB5	Ochrobactrum_phage	52.4	7.2e-73
WP_083706497.1|73919_74849_-	DNA cytosine methyltransferase	NA	A0A0F7L3T9	uncultured_marine_virus	35.0	3.0e-33
WP_156884134.1|75225_75753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083706498.1|75769_76279_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	47.5	1.3e-33
WP_076713850.1|76309_76657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713852.1|76683_77190_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_076713854.1|77144_79295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713856.1|79291_80104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713858.1|80129_83138_-	DUF1983 domain-containing protein	NA	NA	NA	NA	NA
82314:82331	attR	CTCGCCCGTGACCGGGTT	NA	NA	NA	NA
WP_076713860.1|83141_83564_-	hypothetical protein	NA	A0A2P1CKK9	Pantoea_phage	37.0	6.2e-18
82314:82331	attR	CTCGCCCGTGACCGGGTT	NA	NA	NA	NA
WP_076713862.1|83590_84181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713864.1|84180_84774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713866.1|84773_88481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083706499.1|88492_88612_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_076713868.1|88611_89037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713869.1|89033_89354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156884136.1|89357_89783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713872.1|89855_90245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713874.1|90237_90777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713875.1|90776_91124_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_076713877.1|91120_91441_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_076713878.1|91440_91737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713880.1|91811_93071_-|capsid	phage major capsid protein	capsid	C7BGH0	Burkholderia_phage	37.3	2.4e-65
WP_076713882.1|93158_93908_-|protease	Clp protease ClpP	protease	C7BGG9	Burkholderia_phage	48.8	2.9e-42
WP_076713884.1|93873_95214_-|portal	phage portal protein	portal	Q6JIM9	Burkholderia_virus	31.4	7.6e-46
WP_076713886.1|95210_97067_-|terminase	terminase	terminase	B0VK29	Azospirillum_phage	43.8	8.2e-139
WP_083706500.1|97050_97521_-|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
WP_076717694.1|97608_97893_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_076713888.1|97990_98227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713889.1|98237_98816_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA	NA
WP_156884137.1|98815_99031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713893.1|99033_99330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156884138.1|99462_100206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713895.1|100224_100569_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076713897.1|100705_100909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713899.1|100952_101339_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A2H4J4X8	uncultured_Caudovirales_phage	36.4	6.7e-11
WP_076713901.1|101399_101588_-	type II toxin-antitoxin system HicA family toxin	NA	D6R431	Bacillus_phage	60.0	1.7e-15
WP_076713903.1|101810_102158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713904.1|102171_102621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713906.1|102668_103019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076713908.1|103048_103525_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_076713909.1|103607_104099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_083706502.1|104184_104463_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_172839595.1|104656_105169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713915.1|105292_105538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713917.1|105534_105900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713919.1|105896_106109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713921.1|106105_106309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713923.1|106305_106647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884139.1|106639_106957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884140.1|107019_107709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713929.1|107705_107936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076713932.1|108335_109667_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
111554:111569	attR	AATCTCGTCGATAACG	NA	NA	NA	NA
>prophage 2
NZ_CP013916	Sphingomonas sp. LK11 chromosome, complete genome	3781071	896276	909278	3781071	portal,protease,tail,head,capsid	Gordonia_phage(11.11%)	16	NA	NA
WP_076714781.1|896276_897587_+	DNA-packaging protein	NA	A0A0K0N6T3	Gordonia_phage	39.6	9.7e-70
WP_076714783.1|897738_898842_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.5	2.1e-49
WP_056431169.1|898838_899144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076714785.1|899140_899521_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	33.6	2.1e-09
WP_076714787.1|899522_900521_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	49.8	1.8e-79
WP_076717865.1|900740_901214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076714789.1|901210_901600_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_076714791.1|901611_902019_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_076714793.1|902015_902324_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_076714795.1|902320_902518_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_076714797.1|902510_903047_+|tail	tail tape measure protein	tail	D6PEW0	uncultured_phage	33.8	6.6e-09
WP_076714798.1|903207_905481_+	DUF2460 domain-containing protein	NA	A0A140G5Z8	Enterobacteria_phage	29.5	1.7e-53
WP_076714800.1|905477_906284_+	DUF2163 domain-containing protein	NA	Q5DN21	Alphaproteobacteria_virus	39.3	3.1e-10
WP_076714802.1|906280_906649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076714804.1|906648_908772_+	hypothetical protein	NA	A0A1W6DWX7	Sphingobium_phage	37.4	2.0e-24
WP_076714806.1|908771_909278_+	DUF2793 domain-containing protein	NA	A0A0K1LM54	Rhodobacter_phage	44.8	3.3e-18
>prophage 3
NZ_CP013916	Sphingomonas sp. LK11 chromosome, complete genome	3781071	1325603	1337122	3781071	tRNA	Caulobacter_phage(25.0%)	13	NA	NA
WP_076715240.1|1325603_1327058_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	31.0	1.4e-29
WP_007404630.1|1327446_1327653_+	30S ribosomal protein S21	NA	M1HLV7	Pelagibacter_phage	49.2	1.3e-05
WP_056429956.1|1327797_1328373_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_042490327.1|1329115_1329355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076715241.1|1329549_1330308_-	serine/threonine protein phosphatase	NA	A0A1V0EF12	Caulobacter_phage	41.7	7.9e-32
WP_076715243.1|1330380_1331643_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HFY9	Paramecium_bursaria_Chlorella_virus	28.5	2.8e-21
WP_076715244.1|1331626_1332757_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	24.5	3.2e-13
WP_058745066.1|1332870_1333731_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	47.7	4.3e-66
WP_076715246.1|1333931_1334288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076715247.1|1334284_1335052_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_156884182.1|1335048_1335486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056429933.1|1335488_1335938_-	dUTP diphosphatase	NA	K4JSC8	Caulobacter_phage	56.5	6.3e-37
WP_076715250.1|1335934_1337122_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.8	1.8e-38
>prophage 4
NZ_CP013916	Sphingomonas sp. LK11 chromosome, complete genome	3781071	1344391	1380715	3781071	portal,terminase,protease,tail,head,tRNA,capsid	Enterobacteria_phage(30.0%)	43	NA	NA
WP_076715261.1|1344391_1345399_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_076715263.1|1345407_1346985_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_042490310.1|1346998_1347505_-	protein-export chaperone SecB	NA	NA	NA	NA	NA
WP_156361003.1|1347966_1348617_+	Tim44/TimA family putative adaptor protein	NA	NA	NA	NA	NA
WP_156884183.1|1348634_1350002_+	MltA domain-containing protein	NA	NA	NA	NA	NA
WP_076717966.1|1350531_1351647_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_156884184.1|1351758_1351929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715265.1|1352145_1352634_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_076715266.1|1352716_1353379_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_076715268.1|1356862_1357537_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_076715269.1|1357533_1359231_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_058743809.1|1359249_1359462_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_172839719.1|1359464_1359902_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_042490346.1|1359910_1360045_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_076715271.1|1361506_1363240_+	recombinase family protein	NA	NA	NA	NA	NA
WP_076715272.1|1363412_1363907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076715274.1|1363971_1364412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156884185.1|1364626_1364869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884186.1|1365210_1365441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083706567.1|1365600_1365768_+	AlpA family phage regulatory protein	NA	Q7M299	Enterobacteria_phage	42.6	8.9e-05
WP_076715280.1|1365784_1366528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715282.1|1366524_1367082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715283.1|1368442_1369036_-	glycoside hydrolase	NA	A0A2H4JDB4	uncultured_Caudovirales_phage	56.3	2.6e-54
WP_076715285.1|1369262_1369574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715286.1|1369570_1369765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715288.1|1369761_1370007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884187.1|1370013_1370199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715289.1|1370452_1371247_+	hypothetical protein	NA	A0A223W011	Agrobacterium_phage	37.6	2.1e-43
WP_076715291.1|1371270_1371567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076715292.1|1371563_1371827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076715294.1|1371897_1372125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156884189.1|1372145_1372397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715297.1|1372393_1372855_+	HNH endonuclease	NA	Q2NPG0	Xanthomonas_virus	41.8	1.7e-24
WP_156884190.1|1372793_1373171_+	HNH endonuclease	NA	A8B112	Xanthomonas_virus	56.3	2.6e-15
WP_172839629.1|1374175_1374625_+|terminase	phage terminase small subunit P27 family	terminase	Q8W632	Enterobacteria_phage	38.8	9.2e-12
WP_083706568.1|1374627_1376199_+	hypothetical protein	NA	K7P7K8	Enterobacteria_phage	41.2	1.3e-89
WP_076715301.1|1376235_1377537_+|portal	phage portal protein	portal	A0A0F7L418	uncultured_marine_virus	40.1	2.6e-67
WP_172839630.1|1377523_1378153_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	38.2	1.3e-19
WP_076715304.1|1378203_1379376_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	33.8	1.7e-49
WP_156884192.1|1379375_1379552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715306.1|1379600_1380146_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_076715308.1|1380158_1380365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076715309.1|1380367_1380715_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
