assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	1	433272-433372	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP009423.1_424844_425054_-,NA|128aa|up_7|NZ_CP009423.1_425878_426262_-,NA|98aa|up_5|NZ_CP009423.1_427215_427509_-,NA|34aa|up_0|NZ_CP009423.1_432496_432598_+,NA|221aa|down_1|NZ_CP009423.1_434462_435125_-,NA|179aa|down_7|NZ_CP009423.1_441216_441753_-	NA|70aa|up_9|NZ_CP009423.1_424844_425054_-	NA	NA|194aa|up_8|NZ_CP009423.1_425231_425813_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP009423.1_425878_426262_-	NA	NA|209aa|up_6|NZ_CP009423.1_426516_427143_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP009423.1_427215_427509_-	NA	NA|508aa|up_4|NZ_CP009423.1_427587_429111_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP009423.1_429126_429696_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP009423.1_430187_430943_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP009423.1_431023_432412_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP009423.1_432496_432598_+	NA	NA|319aa|down_0|NZ_CP009423.1_433388_434345_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP009423.1_434462_435125_-	NA	NA|136aa|down_2|NZ_CP009423.1_435267_435675_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP009423.1_436187_436766_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP009423.1_436765_438034_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP009423.1_438071_439538_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP009423.1_439562_441104_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP009423.1_441216_441753_-	NA	NA|235aa|down_8|NZ_CP009423.1_442145_442850_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP009423.1_443248_443521_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2	672252-672344	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP009423.1_668736_668844_+,NA|169aa|down_4|NZ_CP009423.1_676091_676598_+,NA|239aa|down_5|NZ_CP009423.1_676759_677476_+,NA|95aa|down_9|NZ_CP009423.1_682255_682540_-	NA|313aa|up_9|NZ_CP009423.1_662938_663877_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP009423.1_664087_664624_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP009423.1_664792_665269_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP009423.1_665308_666604_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP009423.1_666631_667153_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP009423.1_667651_668662_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP009423.1_668736_668844_+	NA	NA|128aa|up_2|NZ_CP009423.1_668969_669353_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP009423.1_669349_671011_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP009423.1_671398_672034_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP009423.1_672472_673300_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP009423.1_673447_674398_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP009423.1_674452_675172_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP009423.1_675155_675956_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP009423.1_676091_676598_+	NA	NA|239aa|down_5|NZ_CP009423.1_676759_677476_+	NA	NA|263aa|down_6|NZ_CP009423.1_677643_678432_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP009423.1_678682_679057_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|225aa|down_8|NZ_CP009423.1_681508_682183_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|95aa|down_9|NZ_CP009423.1_682255_682540_-	NA
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3	836885-836970	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	836915-836940|836915-836940|836915-836940|836915-836940|836915-836940	NZ_CP009423.1_799877-799852|NZ_CP009423.1_2862244-2862269|NZ_CP009423.1_2862300-2862325|NZ_CP009423.1_799933-799908|NZ_CP009423.1_943024-942999	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP009423.1_824137_824977_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP009423.1_825150_825801_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP009423.1_825797_826034_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP009423.1_826302_828288_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP009423.1_828295_831142_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP009423.1_831803_832736_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP009423.1_832741_833581_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP009423.1_833588_834074_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP009423.1_834081_835521_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP009423.1_835587_836523_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP009423.1_837402_838314_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP009423.1_838310_839306_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP009423.1_839415_840360_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP009423.1_840933_841521_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP009423.1_841763_842666_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP009423.1_843367_843997_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP009423.1_844756_845770_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP009423.1_845822_846833_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP009423.1_846971_848162_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP009423.1_848283_849045_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	4	880214-880295	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	880238-880271|880238-880271	NZ_CP009423.1_1369231-1369198|NZ_CP009423.1_1458390-1458423	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP009423.1_879116_879230_+,NA	NA|206aa|up_9|NZ_CP009423.1_873971_874589_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP009423.1_874743_875238_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP009423.1_875636_876059_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP009423.1_876206_876923_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP009423.1_877005_877545_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP009423.1_877694_878015_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP009423.1_878158_878515_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP009423.1_878672_879053_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP009423.1_879116_879230_+	NA	NA|293aa|up_0|NZ_CP009423.1_879231_880110_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP009423.1_880851_881238_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP009423.1_881230_881527_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP009423.1_881776_882802_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP009423.1_882794_883490_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP009423.1_883507_884329_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP009423.1_884471_885692_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP009423.1_885779_886508_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP009423.1_886531_887260_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP009423.1_887276_887735_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP009423.1_887746_888079_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5	943025-943307	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	943055-943080|943055-943080|943055-943080|943055-943080|943169-943194|943169-943194	NZ_CP009423.1_942999-943024|NZ_CP009423.1_799852-799877|NZ_CP009423.1_2862269-2862244|NZ_CP009423.1_2862325-2862300|NZ_CP009423.1_836996-836971|NZ_CP009423.1_394605-394630	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP009423.1_931913_933410_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP009423.1_933402_933732_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP009423.1_933743_934172_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP009423.1_934164_936570_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP009423.1_936700_937084_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP009423.1_937147_937741_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP009423.1_938156_938534_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP009423.1_938895_940023_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP009423.1_940330_941521_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP009423.1_941629_942874_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP009423.1_943376_944306_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP009423.1_944547_945927_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP009423.1_945916_947122_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP009423.1_947472_948804_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP009423.1_949128_949704_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP009423.1_949708_950233_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP009423.1_950248_950824_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP009423.1_950983_954460_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP009423.1_954460_958114_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP009423.1_958279_959182_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	6	1076697-1076784	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP009423.1_1076573_1076693_+,NA|45aa|down_0|NZ_CP009423.1_1076793_1076928_-,NA|432aa|down_1|NZ_CP009423.1_1077079_1078375_+	NA|730aa|up_9|NZ_CP009423.1_1065151_1067341_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP009423.1_1067319_1068804_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP009423.1_1068796_1069825_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP009423.1_1069827_1070394_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP009423.1_1070408_1071887_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP009423.1_1071908_1073156_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP009423.1_1073420_1074227_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP009423.1_1074219_1075620_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP009423.1_1075634_1076210_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP009423.1_1076573_1076693_+	NA	NA|45aa|down_0|NZ_CP009423.1_1076793_1076928_-	NA	NA|432aa|down_1|NZ_CP009423.1_1077079_1078375_+	NA	NA|391aa|down_2|NZ_CP009423.1_1078799_1079972_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP009423.1_1080025_1080568_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP009423.1_1080721_1080988_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP009423.1_1080990_1082709_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP009423.1_1082945_1083179_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP009423.1_1083376_1084738_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP009423.1_1084734_1085754_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP009423.1_1085886_1086549_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7	2061895-2061973	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2061918-2061950|2061918-2061950|2061918-2061950|2061918-2061950|2061918-2061950|2061918-2061950	NZ_CP009423.1_836951-836983|NZ_CP009423.1_1161060-1161028|NZ_CP009423.1_1369185-1369153|NZ_CP009423.1_1683669-1683701|NZ_CP009423.1_2696894-2696926|NZ_CP009423.1_1458436-1458468	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP009423.1_2056089_2056365_+,NA|129aa|up_1|NZ_CP009423.1_2060350_2060737_-,NA|138aa|down_1|NZ_CP009423.1_2063715_2064129_-,NA|37aa|down_2|NZ_CP009423.1_2064157_2064268_-,NA|31aa|down_6|NZ_CP009423.1_2067273_2067366_-	NA|419aa|up_9|NZ_CP009423.1_2054012_2055269_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP009423.1_2055271_2055472_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP009423.1_2055618_2056083_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP009423.1_2056089_2056365_+	NA	NA|406aa|up_5|NZ_CP009423.1_2056642_2057860_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP009423.1_2057975_2058605_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP009423.1_2058594_2059638_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP009423.1_2059634_2060336_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP009423.1_2060350_2060737_-	NA	NA|253aa|up_0|NZ_CP009423.1_2060953_2061712_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP009423.1_2062239_2063226_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP009423.1_2063715_2064129_-	NA	NA|37aa|down_2|NZ_CP009423.1_2064157_2064268_-	NA	NA|244aa|down_3|NZ_CP009423.1_2064353_2065085_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP009423.1_2065086_2066400_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP009423.1_2066691_2067192_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP009423.1_2067273_2067366_-	NA	DEDDh|185aa|down_7|NZ_CP009423.1_2067580_2068135_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP009423.1_2068202_2069273_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP009423.1_2069519_2070050_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	8	2297016-2297166	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP009423.1_2291887_2292118_-,NA|364aa|up_0|NZ_CP009423.1_2295906_2296998_+,NA|35aa|down_0|NZ_CP009423.1_2297497_2297602_-,NA|31aa|down_2|NZ_CP009423.1_2299713_2299806_+	NA|237aa|up_9|NZ_CP009423.1_2287497_2288208_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP009423.1_2288328_2288772_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP009423.1_2288971_2289385_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP009423.1_2289842_2291216_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP009423.1_2291887_2292118_-	NA	NA|313aa|up_4|NZ_CP009423.1_2292148_2293087_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP009423.1_2293521_2294187_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP009423.1_2294338_2294659_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP009423.1_2294660_2295641_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP009423.1_2295906_2296998_+	NA	NA|35aa|down_0|NZ_CP009423.1_2297497_2297602_-	NA	NA|379aa|down_1|NZ_CP009423.1_2298288_2299425_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP009423.1_2299713_2299806_+	NA	NA|286aa|down_3|NZ_CP009423.1_2300510_2301368_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP009423.1_2301435_2302218_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP009423.1_2302449_2304255_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP009423.1_2304935_2306474_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP009423.1_2306508_2308641_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP009423.1_2308652_2309087_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP009423.1_2309086_2310193_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001956815.1_ASM195681v1	NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9	2420934-2421127	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2420957-2420989|2420957-2420989|2420957-2420989|2420957-2420989|2420957-2420989|2421013-2421048|2421013-2421048|2421013-2421048|2421013-2421048|2421072-2421104|2421072-2421104|2421072-2421104|2421072-2421104	NZ_CP009423.1_836951-836983|NZ_CP009423.1_1161060-1161028|NZ_CP009423.1_1369185-1369153|NZ_CP009423.1_1458436-1458468|NZ_CP009423.1_2696894-2696926|NZ_CP009423.1_1161007-1160972|NZ_CP009423.1_1862159-1862124|NZ_CP009423.1_1683608-1683643|NZ_CP009423.1_2072721-2072756|NZ_CP009423.1_836951-836983|NZ_CP009423.1_1161060-1161028|NZ_CP009423.1_1369185-1369153|NZ_CP009423.1_2696894-2696926	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP009423.1_2411461_2411626_+,NA|106aa|up_8|NZ_CP009423.1_2411870_2412188_+,NA|84aa|up_5|NZ_CP009423.1_2417312_2417564_+,NA|57aa|up_0|NZ_CP009423.1_2420703_2420874_+,NA	NA|55aa|up_9|NZ_CP009423.1_2411461_2411626_+	NA	NA|106aa|up_8|NZ_CP009423.1_2411870_2412188_+	NA	NA|1056aa|up_7|NZ_CP009423.1_2412374_2415542_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP009423.1_2415658_2416924_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP009423.1_2417312_2417564_+	NA	NA|255aa|up_4|NZ_CP009423.1_2417555_2418320_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP009423.1_2418481_2418922_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP009423.1_2418914_2420126_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP009423.1_2420227_2420578_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP009423.1_2420703_2420874_+	NA	NA|341aa|down_0|NZ_CP009423.1_2421268_2422291_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP009423.1_2422310_2422910_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP009423.1_2422916_2423150_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP009423.1_2423155_2423602_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP009423.1_2423615_2424101_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP009423.1_2424097_2425357_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP009423.1_2425419_2425914_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP009423.1_2425915_2426422_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP009423.1_2426452_2427457_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP009423.1_2427626_2428232_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
