The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	768543	776363	2904778		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|768543_769599_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|769598_770285_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|770259_770733_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|771074_771515_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|771794_772379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|772477_773191_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|773194_773614_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|773615_774284_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|774634_775228_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|775211_776363_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	788335	803066	2904778		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|788335_789394_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|789744_790287_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|790910_791828_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|791918_792020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|792097_793603_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|793943_794444_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|794463_795330_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|796130_796529_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|796491_798597_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|798714_799686_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|800199_800355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|800393_801365_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|801351_802308_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|802304_803066_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	881776	901006	2904778	capsid,terminase,integrase	Staphylococcus_phage(63.16%)	25	884313:884329	898269:898285
WP_000571218.1|881776_882802_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|882794_883490_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|883507_884329_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
884313:884329	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266158.1|884471_885692_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|885779_886508_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|886531_887260_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_076035545.1|887276_887735_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|887746_888079_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|888271_888535_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|888527_888800_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|888811_888985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|888951_889155_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|889156_889540_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|889540_889789_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000985235.1|889880_892253_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|892923_893268_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|893492_893699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|893685_894744_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|894927_895419_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_086034110.1|895415_895571_+|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
WP_000801979.1|895847_896816_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|897050_897605_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|898638_898833_+	CsbD family protein	NA	NA	NA	NA	NA
898269:898285	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|899065_899917_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|900244_901006_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1061921	1070394	2904778		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1061921_1062404_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1062390_1063515_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1063518_1064223_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1064222_1064486_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1064487_1065159_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032727.1|1065151_1067341_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1067319_1068804_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1068796_1069825_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1069827_1070394_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1512162	1599400	2904778	plate,protease,tRNA,portal,tail,terminase,integrase,holin,capsid,head	Staphylococcus_phage(84.21%)	106	1548525:1548545	1594418:1594438
WP_000858789.1|1512162_1513455_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1513776_1516470_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1516493_1517465_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1517451_1518654_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1518658_1519801_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1520041_1520359_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1520695_1521376_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1521447_1522035_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1522024_1522600_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1522613_1523858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1523864_1525163_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1525172_1526237_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1526262_1527429_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1527814_1528015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1528223_1528673_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1528764_1529709_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1529725_1530451_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1530453_1531026_-	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
WP_001043863.1|1531456_1531729_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1531899_1532898_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1532914_1534225_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1534446_1535622_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1535878_1536070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1536186_1536303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1536333_1536993_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1537069_1538038_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1538152_1539139_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1539299_1539416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1539540_1541001_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1541153_1542533_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1542522_1543476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1543583_1543832_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1543937_1544483_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1544761_1544881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1545079_1545994_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1546008_1546215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1546207_1547146_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1547202_1548120_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061390271.1|1548210_1548462_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1548525:1548545	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1548644_1549628_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1549623_1550562_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1550951_1552406_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1552416_1552719_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1552854_1553154_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1553199_1553364_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1553356_1553746_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1553745_1555212_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1555211_1557122_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1557137_1557428_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1557427_1559011_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1559019_1559844_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1559843_1566044_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1566057_1566216_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1566257_1566608_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1566665_1567121_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1567212_1567854_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1567888_1568284_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1568284_1568686_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1568682_1569015_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1569026_1569305_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1569373_1570537_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1570548_1571322_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1571305_1572544_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1572548_1574240_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1574229_1574535_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1574661_1574976_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1575132_1575570_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1575582_1576950_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1576930_1577221_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_076035551.1|1577354_1577453_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	96.9	1.1e-10
WP_000884870.1|1577561_1580009_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1580296_1580497_-	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1580564_1580717_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1580713_1581100_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1581092_1581329_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1581321_1581525_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1581521_1581728_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1581764_1582301_-	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1582293_1582542_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1582556_1582799_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1582813_1583014_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1583016_1583274_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1583273_1583675_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1583674_1583860_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1583872_1585825_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1585892_1586450_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1586475_1587642_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1587638_1588001_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1588014_1588275_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1588279_1588582_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1588574_1588892_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1589157_1589421_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1589445_1589661_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1589707_1589947_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001115060.1|1590203_1590395_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1590555_1590885_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1590897_1591359_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1591376_1591811_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1591839_1592235_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1592324_1592471_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1592467_1593082_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1593207_1594413_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001548909.1|1594455_1595610_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
1594418:1594438	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_001033767.1|1595636_1596482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001548912.1|1596474_1597404_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1597648_1599400_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 6
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1655231	1663543	2904778	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1655231_1656017_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1656142_1657033_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1657042_1658389_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1658502_1659603_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1659605_1660283_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1660413_1661520_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1661743_1663543_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1732681	1741724	2904778	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1732681_1733200_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1733221_1735495_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1735697_1737977_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1738251_1738512_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1738530_1739670_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1739692_1740718_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1740719_1741724_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1815219	1923077	2904778	plate,protease,tRNA,portal,tail,terminase,integrase,holin,capsid,head	Staphylococcus_phage(72.37%)	114	1809188:1809204	1927299:1927315
1809188:1809204	attL	ACTGCCAATATAACATT	NA	NA	NA	NA
WP_000872653.1|1815219_1816443_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_011447028.1|1816442_1817591_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_001789981.1|1817739_1817880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000244865.1|1817953_1819648_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_000207845.1|1819784_1820249_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_000090512.1|1820492_1821095_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_000174282.1|1821310_1822054_-	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
WP_000553926.1|1822133_1822580_+	OsmC family protein	NA	NA	NA	NA	NA
WP_000291415.1|1822693_1823854_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000808845.1|1823840_1825445_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_001789986.1|1825538_1825634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000721707.1|1825594_1826725_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000276371.1|1826831_1828298_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000287588.1|1828425_1829043_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_076035553.1|1829214_1830489_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
WP_000186029.1|1830582_1831845_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_000184370.1|1832227_1833133_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_001789987.1|1833112_1833205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001032773.1|1833335_1836023_-	haptoglobin-binding heme uptake protein HarA	NA	NA	NA	NA	NA
WP_000149404.1|1836318_1837986_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_000862083.1|1838425_1840132_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	100.0	1.2e-274
WP_001015996.1|1840300_1840933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001184005.1|1840957_1842127_+	acetoin utilization protein AcuC	NA	NA	NA	NA	NA
WP_000219066.1|1842224_1843214_-	catabolite control protein A	NA	NA	NA	NA	NA
WP_001788994.1|1843286_1843400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000066378.1|1843753_1844845_-	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA	NA
WP_001791758.1|1845305_1845410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000193917.1|1845544_1846903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000383814.1|1846976_1847468_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_000150168.1|1847541_1848855_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_000118287.1|1848878_1852703_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
WP_001048368.1|1852723_1853320_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_001091387.1|1853348_1854206_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_000811163.1|1854305_1854617_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001024576.1|1854681_1855758_-	M42 family metallopeptidase	NA	NA	NA	NA	NA
WP_000163826.1|1855844_1856156_+	peptidase	NA	NA	NA	NA	NA
WP_000689580.1|1856280_1857123_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_001266157.1|1857592_1858237_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1858251_1859043_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411085.1|1859592_1860441_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265417.1|1860444_1861854_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051860.1|1862603_1863026_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1863042_1863738_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004335.1|1863734_1865396_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000285014.1|1865802_1867071_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
WP_050961202.1|1872986_1873178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050961201.1|1873313_1874759_-	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	98.3	7.2e-292
WP_000354119.1|1874739_1875177_-|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_031890882.1|1875232_1875628_-	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	99.2	6.1e-68
WP_031890881.1|1875633_1876872_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	96.6	3.3e-205
WP_050961200.1|1876884_1878783_-	CHAP domain-containing protein	NA	A1KX46	Staphylococcus_virus	98.9	0.0e+00
WP_000782200.1|1879259_1879433_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_031844790.1|1879436_1879814_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_050961199.1|1879813_1881637_-|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	99.7	0.0e+00
WP_050961198.1|1881636_1883547_-	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.2	0.0e+00
WP_000156414.1|1883561_1885463_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	97.9	0.0e+00
WP_031898192.1|1885471_1886419_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	8.0e-183
WP_050961197.1|1886431_1889899_-	hypothetical protein	NA	A0EWM3	Staphylococcus_virus	99.3	1.7e-246
WP_001599101.1|1889915_1890260_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_031898197.1|1890289_1890655_-|tail	tail assembly protein	tail	A0A0F6N4J9	Staphylococcus_phage	99.2	6.2e-59
WP_031898198.1|1890716_1891298_-|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	97.9	3.5e-104
WP_000188640.1|1891316_1891700_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	1.0e-67
WP_001017815.1|1891711_1892059_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_031880723.1|1892058_1892361_-	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	99.0	7.4e-50
WP_000208959.1|1892357_1892690_-|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_001114085.1|1892698_1892986_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000438500.1|1893007_1893982_-|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	99.7	1.8e-182
WP_031925652.1|1893995_1894616_-	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	92.2	1.2e-67
WP_001813737.1|1894946_1895942_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
WP_000921887.1|1895948_1897484_-|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	100.0	5.8e-292
WP_000169945.1|1897494_1898772_-|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_001003271.1|1898758_1899199_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000058632.1|1899385_1899805_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_000990005.1|1899819_1899966_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_031924097.1|1899966_1900140_-	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
WP_031764620.1|1900136_1900343_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	97.1	9.3e-20
WP_076035554.1|1900379_1900886_-	dUTPase	NA	M9NS45	Staphylococcus_phage	91.7	2.2e-86
WP_000454994.1|1901062_1901344_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_076035555.1|1901507_1901759_-	DUF1024 family protein	NA	Q4ZBD2	Staphylococcus_virus	98.8	2.3e-36
WP_033861700.1|1901751_1902141_-	hypothetical protein	NA	I1W604	Staphylococcus_phage	78.3	1.3e-49
WP_000979209.1|1902137_1902485_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_076035556.1|1902484_1902676_-	hypothetical protein	NA	Q4ZBT5	Staphylococcus_virus	96.8	3.6e-26
WP_076035557.1|1902672_1903053_-	hypothetical protein	NA	R4IH22	Staphylococcus_phage	65.1	1.2e-36
WP_076035558.1|1903066_1903315_-	hypothetical protein	NA	C8CH00	Staphylococcus_phage	97.6	8.0e-42
WP_076035559.1|1903315_1903825_-	hypothetical protein	NA	C8CGZ9	Staphylococcus_phage	88.8	1.5e-42
WP_072512743.1|1903825_1904011_-	DUF3113 family protein	NA	A0A2I6PDN7	Staphylococcus_phage	95.1	3.5e-26
WP_076035560.1|1904015_1904420_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	98.5	7.8e-71
WP_001123685.1|1904430_1904652_-	DUF3269 family protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	9.9e-36
WP_001024406.1|1904654_1904870_-	hypothetical protein	NA	A9CR72	Staphylococcus_phage	100.0	2.8e-35
WP_001106169.1|1904866_1906108_-	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	99.8	3.3e-229
WP_031764163.1|1906104_1906461_-	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	96.6	1.4e-60
WP_076035561.1|1906460_1907246_-	DnaD domain protein	NA	Q8SDW2	Staphylococcus_phage	97.0	2.9e-106
WP_031764159.1|1907217_1907913_-	phi PV83 orf 19-like protein	NA	A0A0E3XBQ6	Staphylococcus_phage	97.0	8.9e-131
WP_031764158.1|1907926_1908355_-	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	97.9	6.2e-58
WP_001043062.1|1908354_1908993_-	ERF family protein	NA	A0A059T7J7	Staphylococcus_phage	99.5	1.3e-115
WP_000002512.1|1908992_1909472_-	siphovirus Gp157 family protein	NA	R4IFK3	Staphylococcus_phage	98.7	5.8e-81
WP_000848127.1|1909464_1909701_-	hypothetical protein	NA	A0A1X9H097	Staphylococcus_phage	97.4	5.1e-38
WP_000291100.1|1909708_1909969_-	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	98.8	3.4e-43
WP_000048124.1|1910062_1910224_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000977381.1|1910216_1910438_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_031764600.1|1910508_1911174_+	hypothetical protein	NA	Q9G033	Staphylococcus_virus	98.2	2.0e-116
WP_001148587.1|1911278_1912028_-	antirepressor	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
WP_000933365.1|1912029_1912215_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_031764597.1|1912788_1912992_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	97.0	2.3e-31
WP_001121116.1|1913005_1913242_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1913393_1913708_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_031764593.1|1913720_1914182_+	toxin	NA	A0A2K9VBR7	Staphylococcus_phage	98.7	4.6e-83
WP_031764591.1|1914199_1914703_+	hypothetical protein	NA	A9CR44	Staphylococcus_phage	98.8	2.4e-45
WP_031764589.1|1914764_1915814_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	5.9e-203
WP_000836465.1|1917234_1917546_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108732.1|1917567_1919982_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1920272_1921454_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1921563_1922517_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1922513_1923077_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
1927299:1927315	attR	AATGTTATATTGGCAGT	NA	NA	NA	NA
>prophage 9
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	1926237	1989679	2904778	transposase,protease	Staphylococcus_phage(96.15%)	65	NA	NA
WP_001196354.1|1926237_1927239_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1927360_1927825_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1927837_1929019_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1929029_1929662_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1929668_1930700_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1931192_1932695_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1933217_1933532_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1933531_1934824_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1934841_1935237_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1935531_1936386_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1936661_1936886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1937084_1937555_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1937667_1938111_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1938097_1938541_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1938836_1939472_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1939911_1940625_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1940884_1941187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1941442_1941808_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1941804_1942158_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1944239_1945073_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1945284_1946193_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1946317_1947511_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1947881_1949474_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1950469_1951216_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1951220_1951694_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1951759_1952017_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1952013_1953015_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1953019_1954498_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1954656_1955112_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1955414_1956065_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_076035562.1|1956145_1957141_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.0	6.4e-74
WP_000669037.1|1957216_1957372_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
WP_000188802.1|1957372_1957843_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
WP_000627551.1|1957883_1958228_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1958325_1958877_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1959094_1959736_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1959849_1960035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1960036_1960213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1960223_1960607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1961210_1961354_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1961556_1961652_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1961774_1961876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1962223_1962583_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1963121_1967234_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1968083_1969283_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1969275_1971015_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1970995_1971130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076035563.1|1971194_1971914_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.2e-130
WP_001038759.1|1972064_1972781_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1972882_1972990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1972938_1973658_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1973778_1974498_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1974555_1975278_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1975402_1976110_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_000586140.1|1978113_1978812_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1978808_1979570_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1979566_1980259_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1980281_1981655_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1981664_1982183_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1982198_1983443_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1983435_1986429_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1986493_1986637_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1987373_1987517_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_076035564.1|1987758_1988742_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	5.2e-185
WP_031771766.1|1988743_1989679_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	3.9e-174
>prophage 10
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	2904778	2074817	2175056	2904778	protease,tRNA,portal,tail,terminase,integrase,holin,capsid,head	Staphylococcus_phage(88.75%)	120	2136243:2136260	2161173:2161190
WP_000027928.1|2074817_2076275_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2076276_2076579_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_031807212.1|2076945_2078484_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2078572_2079772_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_050901420.1|2079784_2081788_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	35.9	1.9e-109
WP_000992921.1|2081791_2083984_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2083980_2084673_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2084844_2085147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2085255_2086551_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2087411_2088578_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2088608_2088935_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2089226_2089400_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2089380_2089983_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2090253_2091075_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2091067_2092537_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2092720_2093797_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2093816_2094611_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2094682_2094790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2094800_2096363_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2096567_2097665_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2098036_2098597_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2098649_2099579_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2099773_2099947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2099998_2101378_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2101497_2102526_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2102795_2103197_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2103769_2103943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2104393_2105434_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2105490_2106333_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2106329_2106887_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2106946_2107471_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2107591_2108155_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2108220_2108961_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2108960_2109833_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2109829_2110510_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2110510_2111407_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2111403_2111784_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2112047_2112224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2112466_2112565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2112764_2114051_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2114675_2116430_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2117387_2117567_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2117877_2118138_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2118190_2118541_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2119225_2119675_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2119769_2120228_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2120754_2121246_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2121436_2122192_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2122203_2122458_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2122509_2122617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2122669_2122846_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2122995_2123292_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2123349_2123637_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2123683_2123836_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2123825_2127611_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2127626_2129111_-|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549166.1|2129107_2133637_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001096354.1|2133881_2134232_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2134281_2134521_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2134547_2135192_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2135195_2135600_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2135596_2136001_-	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2135997_2136360_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2136243:2136260	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2136343_2136628_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238237.1|2136640_2136901_-	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000154559.1|2136920_2138066_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2138089_2138827_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2138810_2139998_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2140013_2141675_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2141671_2142016_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2142145_2142445_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2142676_2143093_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2143120_2143321_-	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2143320_2143470_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2143466_2143853_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2143849_2144056_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2144052_2144298_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2144334_2144868_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2144860_2145103_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2145092_2145329_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2145321_2145693_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2145701_2145944_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2145947_2146316_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2146328_2146733_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2146741_2146960_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2146966_2147860_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2147889_2148360_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2148360_2148978_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2149058_2149979_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2149980_2151924_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2151932_2152196_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2152204_2152465_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2152504_2152765_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2152859_2153021_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2153017_2153338_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2153396_2153627_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001148642.1|2153815_2154568_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2154618_2154948_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2154936_2155152_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2155167_2155431_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2155427_2155601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2155563_2156277_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2156292_2157225_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2157230_2157572_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2157775_2157958_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2158035_2158749_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2158939_2159977_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2161095_2162112_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2161173:2161190	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2162133_2163189_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2163623_2164847_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2165218_2166064_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2166125_2167037_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2167197_2168505_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2169357_2169801_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2169965_2170343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2170660_2171251_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_000128898.1|2171247_2171460_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2172161_2173778_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2173853_2174138_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2174312_2175056_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NZ_CP009425	Staphylococcus aureus subsp. aureus plasmid pSUR1B, complete sequence	27068	0	11744	27068	transposase	Streptococcus_phage(57.14%)	13	NA	NA
WP_000627289.1|1237_1768_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|1860_2655_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_078154339.1|3286_3502_+	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.6	3.4e-33
WP_001105991.1|3670_4345_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001037130.1|4606_4792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690637.1|5014_5593_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_000182645.1|5856_6237_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|6226_7984_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733287.1|8090_8936_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000418035.1|9461_9881_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|10004_10976_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|11147_11240_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|11396_11744_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
>prophage 2
NZ_CP009425	Staphylococcus aureus subsp. aureus plasmid pSUR1B, complete sequence	27068	18043	25882	27068	transposase	Staphylococcus_phage(40.0%)	7	NA	NA
WP_000797248.1|18043_18229_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|18233_18572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|18817_19426_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000196697.1|19911_20811_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|20909_22376_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|22849_23524_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000793446.1|24952_25882_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
