assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001953955.1_ASM195395v1	NZ_CP019300	Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I, complete sequence	1	602421-603239	1,1	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas9	WYL,cas2,cas1,cas9,cas3,DEDDh	 or Type II-C?, Type II-B,Type II-A,Type II-B,Type II-C	GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC,GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC	47,47	0	0	NA	NA	NA:NA	10,10	10	orTypeII-C?,TypeII-B,TypeII-A,TypeII-B,TypeII-C	WYL,cas2,cas1,cas9,cas3,DEDDh,Csx28,cas13b,RT,PD-DExK	NA|479aa|up_8|NZ_CP019300.1_589907_591344_-,NA|450aa|up_7|NZ_CP019300.1_591340_592690_-,NA|89aa|up_1|NZ_CP019300.1_599563_599830_+,NA|153aa|up_0|NZ_CP019300.1_600110_600569_-,NA|82aa|down_4|NZ_CP019300.1_612516_612762_-	NA|320aa|up_9|NZ_CP019300.1_588934_589894_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|479aa|up_8|NZ_CP019300.1_589907_591344_-	NA	NA|450aa|up_7|NZ_CP019300.1_591340_592690_-	NA	NA|321aa|up_6|NZ_CP019300.1_592775_593738_-	pfam12710, HAD, haloacid dehalogenase-like hydrolase	NA|293aa|up_5|NZ_CP019300.1_593739_594618_-	cd13963, PT_UbiA_2, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|341aa|up_4|NZ_CP019300.1_594622_595645_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|368aa|up_3|NZ_CP019300.1_595646_596750_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|616aa|up_2|NZ_CP019300.1_596812_598660_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|89aa|up_1|NZ_CP019300.1_599563_599830_+	NA	NA|153aa|up_0|NZ_CP019300.1_600110_600569_-	NA	NA|300aa|down_0|NZ_CP019300.1_603395_604295_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas2|99aa|down_1|NZ_CP019300.1_606699_606996_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|311aa|down_2|NZ_CP019300.1_607047_607980_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1381aa|down_3|NZ_CP019300.1_607992_612135_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|82aa|down_4|NZ_CP019300.1_612516_612762_-	NA	NA|444aa|down_5|NZ_CP019300.1_612986_614318_-	pfam13173, AAA_14, AAA domain	NA|475aa|down_6|NZ_CP019300.1_614608_616033_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|399aa|down_7|NZ_CP019300.1_616433_617630_-	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|352aa|down_8|NZ_CP019300.1_617738_618794_-	PRK11096, ansB, L-asparaginase II; Provisional	NA|439aa|down_9|NZ_CP019300.1_618853_620170_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed
GCF_001953955.1_ASM195395v1	NZ_CP019300	Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I, complete sequence	2	604302-606579	2,2	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	WYL,cas2,cas1,cas9,cas3,DEDDh	 or Type II-C?, Type II-B,Type II-A,Type II-B,Type II-C	GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC,GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC	47,47	0	0	NA	NA	NA:NA	29,28	29	orTypeII-C?,TypeII-B,TypeII-A,TypeII-B,TypeII-C	WYL,cas2,cas1,cas9,cas3,DEDDh,Csx28,cas13b,RT,PD-DExK	NA|479aa|up_9|NZ_CP019300.1_589907_591344_-,NA|450aa|up_8|NZ_CP019300.1_591340_592690_-,NA|89aa|up_2|NZ_CP019300.1_599563_599830_+,NA|153aa|up_1|NZ_CP019300.1_600110_600569_-,NA|82aa|down_3|NZ_CP019300.1_612516_612762_-	NA|479aa|up_9|NZ_CP019300.1_589907_591344_-	NA	NA|450aa|up_8|NZ_CP019300.1_591340_592690_-	NA	NA|321aa|up_7|NZ_CP019300.1_592775_593738_-	pfam12710, HAD, haloacid dehalogenase-like hydrolase	NA|293aa|up_6|NZ_CP019300.1_593739_594618_-	cd13963, PT_UbiA_2, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|341aa|up_5|NZ_CP019300.1_594622_595645_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|368aa|up_4|NZ_CP019300.1_595646_596750_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|616aa|up_3|NZ_CP019300.1_596812_598660_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|89aa|up_2|NZ_CP019300.1_599563_599830_+	NA	NA|153aa|up_1|NZ_CP019300.1_600110_600569_-	NA	NA|300aa|up_0|NZ_CP019300.1_603395_604295_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas2|99aa|down_0|NZ_CP019300.1_606699_606996_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|311aa|down_1|NZ_CP019300.1_607047_607980_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1381aa|down_2|NZ_CP019300.1_607992_612135_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|82aa|down_3|NZ_CP019300.1_612516_612762_-	NA	NA|444aa|down_4|NZ_CP019300.1_612986_614318_-	pfam13173, AAA_14, AAA domain	NA|475aa|down_5|NZ_CP019300.1_614608_616033_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|399aa|down_6|NZ_CP019300.1_616433_617630_-	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|352aa|down_7|NZ_CP019300.1_617738_618794_-	PRK11096, ansB, L-asparaginase II; Provisional	NA|439aa|down_8|NZ_CP019300.1_618853_620170_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|154aa|down_9|NZ_CP019300.1_620522_620984_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides
GCF_001953955.1_ASM195395v1	NZ_CP019301	Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II, complete sequence	1	188069-188892	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	Csx28,cas13b	DEDDh,Csx28,cas13b,RT,PD-DExK	Type VI-B2,,Type VI-B1	GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC,GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC,GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC	36,36,36	0	0	NA	NA	VI-B2:VI-B2:VI-B2	11,12,12	12	TypeVI-B2,,TypeVI-B1	WYL,cas2,cas1,cas9,cas3,DEDDh,Csx28,cas13b,RT,PD-DExK	NA|170aa|up_8|NZ_CP019301.1_171340_171850_+,NA|678aa|up_7|NZ_CP019301.1_172794_174828_+,NA|68aa|up_0|NZ_CP019301.1_187577_187781_+,Csx28|202aa|down_0|NZ_CP019301.1_188917_189523_-,NA|298aa|down_2|NZ_CP019301.1_193187_194081_-,NA|139aa|down_3|NZ_CP019301.1_194257_194674_+	NA|652aa|up_9|NZ_CP019301.1_169291_171247_+	PRK02628, nadE, NAD synthetase; Reviewed	NA|170aa|up_8|NZ_CP019301.1_171340_171850_+	NA	NA|678aa|up_7|NZ_CP019301.1_172794_174828_+	NA	NA|763aa|up_6|NZ_CP019301.1_175434_177723_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|206aa|up_5|NZ_CP019301.1_177859_178477_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|733aa|up_4|NZ_CP019301.1_178600_180799_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|506aa|up_3|NZ_CP019301.1_180951_182469_+	pfam14134, DUF4301, Domain of unknown function (DUF4301)	NA|267aa|up_2|NZ_CP019301.1_182629_183430_-	pfam04383, KilA-N, KilA-N domain	NA|1007aa|up_1|NZ_CP019301.1_184229_187250_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|68aa|up_0|NZ_CP019301.1_187577_187781_+	NA	Csx28|202aa|down_0|NZ_CP019301.1_188917_189523_-	NA	cas13b|1127aa|down_1|NZ_CP019301.1_189527_192908_-	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	NA|298aa|down_2|NZ_CP019301.1_193187_194081_-	NA	NA|139aa|down_3|NZ_CP019301.1_194257_194674_+	NA	NA|177aa|down_4|NZ_CP019301.1_202801_203332_-	pfam11888, DUF3408, Protein of unknown function (DUF3408)	NA|266aa|down_5|NZ_CP019301.1_203328_204126_-	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain	NA|423aa|down_6|NZ_CP019301.1_205057_206326_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|508aa|down_7|NZ_CP019301.1_211301_212825_+	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	NA|442aa|down_8|NZ_CP019301.1_212814_214140_+	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component	NA|97aa|down_9|NZ_CP019301.1_214642_214933_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated
GCF_001953955.1_ASM195395v1	NZ_CP019301	Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II, complete sequence	2	370077-370178	2	CRISPRCasFinder	no		DEDDh,Csx28,cas13b,RT,PD-DExK	Orphan	GCCAACGAGTGCAAAGAAAGTTTACTTTCAATTTG	35	0	0	NA	NA	NA	1	1	Orphan	WYL,cas2,cas1,cas9,cas3,DEDDh,Csx28,cas13b,RT,PD-DExK	NA,NA|143aa|down_0|NZ_CP019301.1_370511_370940_+,NA|206aa|down_8|NZ_CP019301.1_380009_380627_-	NA|329aa|up_9|NZ_CP019301.1_358164_359151_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|496aa|up_8|NZ_CP019301.1_359263_360751_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|73aa|up_7|NZ_CP019301.1_360940_361159_+	pfam14899, DUF4492, Domain of unknown function (DUF4492)	NA|512aa|up_6|NZ_CP019301.1_361342_362878_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|381aa|up_5|NZ_CP019301.1_362874_364017_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|409aa|up_4|NZ_CP019301.1_364607_365834_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|227aa|up_3|NZ_CP019301.1_365852_366533_+	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|582aa|up_2|NZ_CP019301.1_366804_368550_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|104aa|up_1|NZ_CP019301.1_368773_369085_+	pfam14898, DUF4491, Domain of unknown function (DUF4491)	NA|157aa|up_0|NZ_CP019301.1_369081_369552_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|143aa|down_0|NZ_CP019301.1_370511_370940_+	NA	NA|403aa|down_1|NZ_CP019301.1_371032_372241_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|680aa|down_2|NZ_CP019301.1_372509_374549_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|348aa|down_3|NZ_CP019301.1_374704_375748_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|304aa|down_4|NZ_CP019301.1_375824_376736_-	cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars	NA|387aa|down_5|NZ_CP019301.1_377608_378769_+	pfam01051, Rep_3, Initiator Replication protein	NA|170aa|down_6|NZ_CP019301.1_378809_379319_+	pfam14300, DUF4375, Domain of unknown function (DUF4375)	NA|160aa|down_7|NZ_CP019301.1_379311_379791_+	pfam01668, SmpB, SmpB protein	NA|206aa|down_8|NZ_CP019301.1_380009_380627_-	NA	NA|592aa|down_9|NZ_CP019301.1_381432_383208_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed
