assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001953035.1_ASM195303v1	NZ_CP019179	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 chromosome, complete genome	1	940295-940628	1,1	CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	29,27	0	0	NA	NA	I-E:I-E	5,5	5	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|179aa|up_9|NZ_CP019179.1_928841_929378_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP019179.1_929374_929845_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP019179.1_929859_930366_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP019179.1_930385_931159_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP019179.1_931171_933871_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP019179.1_933950_934538_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP019179.1_935144_935945_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP019179.1_936172_937810_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP019179.1_937892_939191_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP019179.1_939326_939998_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP019179.1_940726_941524_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP019179.1_941611_941974_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP019179.1_942397_944197_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP019179.1_944196_945909_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP019179.1_946010_946745_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP019179.1_946832_947786_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|519aa|down_6|NZ_CP019179.1_950904_952461_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_7|NZ_CP019179.1_952457_953018_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_8|NZ_CP019179.1_953031_954090_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|NZ_CP019179.1_954100_954847_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_001953035.1_ASM195303v1	NZ_CP019179	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 chromosome, complete genome	2	956786-956934	2	CRISPRCasFinder	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC	27	0	0	NA	NA	I-E	2	2	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|571aa|up_9|NZ_CP019179.1_944196_945909_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP019179.1_946010_946745_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP019179.1_946832_947786_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|519aa|up_6|NZ_CP019179.1_950904_952461_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP019179.1_952457_953018_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP019179.1_953031_954090_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP019179.1_954100_954847_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP019179.1_954828_955479_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP019179.1_955475_956396_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019179.1_956395_956689_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP019179.1_956950_957997_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019179.1_958247_959156_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP019179.1_959165_960605_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019179.1_960591_961197_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP019179.1_961247_961571_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019179.1_961761_962073_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019179.1_962091_962802_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019179.1_962801_963281_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019179.1_963277_964327_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019179.1_964307_965069_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001953035.1_ASM195303v1	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	1	24523-24642	1	CRISPRCasFinder	no		cas14j	Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|182aa|up_9|NZ_CP019180.1_20153_20699_-,NA|91aa|up_8|NZ_CP019180.1_21024_21297_-,NA|50aa|up_7|NZ_CP019180.1_21309_21459_-,NA|60aa|up_6|NZ_CP019180.1_21528_21708_-,NA|110aa|up_5|NZ_CP019180.1_21750_22080_-,NA|82aa|up_3|NZ_CP019180.1_22377_22623_-,NA|108aa|up_2|NZ_CP019180.1_22667_22991_-,NA|149aa|down_1|NZ_CP019180.1_25770_26217_+,NA|141aa|down_2|NZ_CP019180.1_26284_26707_+,NA|112aa|down_6|NZ_CP019180.1_30237_30573_-,NA|163aa|down_9|NZ_CP019180.1_32632_33121_+	NA|182aa|up_9|NZ_CP019180.1_20153_20699_-	NA	NA|91aa|up_8|NZ_CP019180.1_21024_21297_-	NA	NA|50aa|up_7|NZ_CP019180.1_21309_21459_-	NA	NA|60aa|up_6|NZ_CP019180.1_21528_21708_-	NA	NA|110aa|up_5|NZ_CP019180.1_21750_22080_-	NA	NA|72aa|up_4|NZ_CP019180.1_22172_22388_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|82aa|up_3|NZ_CP019180.1_22377_22623_-	NA	NA|108aa|up_2|NZ_CP019180.1_22667_22991_-	NA	NA|94aa|up_1|NZ_CP019180.1_23136_23418_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP019180.1_23407_23659_-	PRK02854, PRK02854, primosomal protein DnaT	NA|279aa|down_0|NZ_CP019180.1_24894_25731_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_1|NZ_CP019180.1_25770_26217_+	NA	NA|141aa|down_2|NZ_CP019180.1_26284_26707_+	NA	NA|77aa|down_3|NZ_CP019180.1_27345_27576_-	pfam09274, ParG, ParG	NA|207aa|down_4|NZ_CP019180.1_27627_28248_-	cd02042, ParAB_family, partition proteins ParAB family	NA|189aa|down_5|NZ_CP019180.1_29614_30181_-	pfam11140, DUF2913, Protein of unknown function (DUF2913)	NA|112aa|down_6|NZ_CP019180.1_30237_30573_-	NA	NA|139aa|down_7|NZ_CP019180.1_30756_31173_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|372aa|down_8|NZ_CP019180.1_31258_32374_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|163aa|down_9|NZ_CP019180.1_32632_33121_+	NA
