assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001952775.1_ASM195277v1	NZ_CP019167	Listeria monocytogenes strain HPB5622 chromosome, complete genome	1	213603-213754	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,DEDDh,casR	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,DEDDh,casR	NA,NA	NA|231aa|up_9|NZ_CP019167.1_200801_201494_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP019167.1_201490_202699_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP019167.1_203383_203692_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP019167.1_203811_204120_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP019167.1_204506_205880_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP019167.1_205930_206887_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP019167.1_206929_207643_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP019167.1_207913_208867_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP019167.1_209108_210698_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP019167.1_211028_212561_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP019167.1_214714_215584_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP019167.1_215655_215979_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP019167.1_216113_216575_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP019167.1_216625_216958_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP019167.1_217024_217699_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP019167.1_217775_218717_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP019167.1_219010_219634_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP019167.1_219723_220308_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP019167.1_220414_220975_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP019167.1_221089_224629_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_001952775.1_ASM195277v1	NZ_CP019167	Listeria monocytogenes strain HPB5622 chromosome, complete genome	2	380871-381027	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh,casR	Orphan	ATTTAGGTAAATTTTGAAAATCAGG	25	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,WYL,DEDDh,casR	NA,NA|133aa|down_4|NZ_CP019167.1_386247_386646_+	NA|166aa|up_9|NZ_CP019167.1_369354_369852_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|492aa|up_8|NZ_CP019167.1_369937_371413_+	sd00006, TPR, Tetratricopeptide repeat	NA|320aa|up_7|NZ_CP019167.1_371491_372451_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|328aa|up_6|NZ_CP019167.1_372569_373553_+	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|354aa|up_5|NZ_CP019167.1_373569_374631_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|577aa|up_4|NZ_CP019167.1_374672_376403_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|292aa|up_3|NZ_CP019167.1_376510_377386_+	PRK05416, PRK05416, RNase adapter RapZ	NA|323aa|up_2|NZ_CP019167.1_377387_378356_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|324aa|up_1|NZ_CP019167.1_378363_379335_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|339aa|up_0|NZ_CP019167.1_379361_380378_+	PRK13523, PRK13523, NADPH dehydrogenase NamA; Provisional	NA|464aa|down_0|NZ_CP019167.1_381814_383206_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|199aa|down_1|NZ_CP019167.1_383251_383848_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|478aa|down_2|NZ_CP019167.1_384004_385438_+	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown]	NA|112aa|down_3|NZ_CP019167.1_385685_386021_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|133aa|down_4|NZ_CP019167.1_386247_386646_+	NA	NA|203aa|down_5|NZ_CP019167.1_386662_387271_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|721aa|down_6|NZ_CP019167.1_387349_389512_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|309aa|down_7|NZ_CP019167.1_389590_390517_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|448aa|down_8|NZ_CP019167.1_390675_392019_+	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|349aa|down_9|NZ_CP019167.1_392461_393508_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_001952775.1_ASM195277v1	NZ_CP019167	Listeria monocytogenes strain HPB5622 chromosome, complete genome	3	2499170-2499647	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh,casR	Orphan	ATTTACATTTCACAATAAGTAACTAAAAC,ATTTACATTTCACAATAAGTAACTAAAA,ATTTACATTTCACAATAAGTAACTAAAAC	29,28,29	3	3	2499199-2499233|2499263-2499298|2499584-2499618	NZ_CP019167.1_553675-553709|NZ_CP019167.1_1720897-1720932|NZ_CP019167.1_1719750-1719784	I-A:I-A:I-A	7,7,7	7	Orphan	csa3,DinG,cas3,WYL,DEDDh,casR	NA|193aa|up_0|NZ_CP019167.1_2498199_2498778_-,NA|133aa|down_5|NZ_CP019167.1_2504258_2504657_-	NA|472aa|up_9|NZ_CP019167.1_2489190_2490606_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_8|NZ_CP019167.1_2490752_2491121_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|272aa|up_7|NZ_CP019167.1_2491401_2492217_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|up_6|NZ_CP019167.1_2492337_2493768_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|up_5|NZ_CP019167.1_2493814_2494246_-	pfam00582, Usp, Universal stress protein family	NA|612aa|up_4|NZ_CP019167.1_2494346_2496182_-	NF033186, internalin_K, class 1 internalin InlK	NA|153aa|up_3|NZ_CP019167.1_2496563_2497022_+	pfam12802, MarR_2, MarR family	NA|120aa|up_2|NZ_CP019167.1_2497028_2497388_+	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|227aa|up_1|NZ_CP019167.1_2497412_2498093_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|193aa|up_0|NZ_CP019167.1_2498199_2498778_-	NA	NA|312aa|down_0|NZ_CP019167.1_2499884_2500820_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|424aa|down_1|NZ_CP019167.1_2500959_2502231_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|98aa|down_2|NZ_CP019167.1_2502245_2502539_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|349aa|down_3|NZ_CP019167.1_2502554_2503601_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|217aa|down_4|NZ_CP019167.1_2503597_2504248_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|133aa|down_5|NZ_CP019167.1_2504258_2504657_-	NA	NA|156aa|down_6|NZ_CP019167.1_2504673_2505141_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|201aa|down_7|NZ_CP019167.1_2505168_2505771_-	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|687aa|down_8|NZ_CP019167.1_2505774_2507835_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|217aa|down_9|NZ_CP019167.1_2507943_2508594_-	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]
GCF_001952775.1_ASM195277v1	NZ_CP019167	Listeria monocytogenes strain HPB5622 chromosome, complete genome	4	2876580-2876688	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh,casR	Orphan	AGAACTTTCAAAATGTACTTTATTTTGATTTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,DEDDh,casR	NA,NA|74aa|down_2|NZ_CP019167.1_2877479_2877701_-,NA|52aa|down_4|NZ_CP019167.1_2879642_2879798_+,NA|214aa|down_5|NZ_CP019167.1_2880369_2881011_-	NA|330aa|up_9|NZ_CP019167.1_2868561_2869551_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP019167.1_2869572_2870169_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP019167.1_2870172_2870547_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP019167.1_2870652_2871504_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP019167.1_2871622_2872462_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP019167.1_2872582_2873425_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP019167.1_2873470_2873716_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP019167.1_2873730_2874327_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP019167.1_2874435_2874753_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP019167.1_2874782_2876522_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP019167.1_2876812_2877277_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP019167.1_2877294_2877477_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP019167.1_2877479_2877701_-	NA	NA|455aa|down_3|NZ_CP019167.1_2877835_2879200_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP019167.1_2879642_2879798_+	NA	NA|214aa|down_5|NZ_CP019167.1_2880369_2881011_-	NA	NA|505aa|down_6|NZ_CP019167.1_2881708_2883223_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP019167.1_2883338_2884277_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP019167.1_2884319_2885267_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP019167.1_2885407_2887147_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
