assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	1	936938-937207	1,1	CRISPRCasFinder,CRT	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	ATCGGCCCCGCACACGCGGGGATGGACC,ATCGGCCCCGCACACGCGGGGATGGACCNN	28,30	0	0	NA	NA	NA:NA	4,4	4	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|126aa|down_8|NZ_CP016076.1_950381_950759_+	NA|169aa|up_9|NZ_CP016076.1_925245_925752_-	cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|397aa|up_8|NZ_CP016076.1_925969_927160_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|531aa|up_7|NZ_CP016076.1_927229_928822_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|174aa|up_6|NZ_CP016076.1_928955_929477_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|418aa|up_5|NZ_CP016076.1_929810_931064_-	PRK07588, PRK07588, FAD-binding domain	NA|291aa|up_4|NZ_CP016076.1_931326_932199_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|328aa|up_3|NZ_CP016076.1_932195_933179_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|382aa|up_2|NZ_CP016076.1_933196_934342_-	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]	NA|245aa|up_1|NZ_CP016076.1_934732_935467_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|445aa|up_0|NZ_CP016076.1_935463_936798_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|638aa|down_0|NZ_CP016076.1_938823_940737_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|572aa|down_1|NZ_CP016076.1_941171_942887_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|596aa|down_2|NZ_CP016076.1_943184_944972_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP016076.1_945121_946117_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|down_4|NZ_CP016076.1_946118_947039_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|375aa|down_5|NZ_CP016076.1_947038_948163_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_6|NZ_CP016076.1_948162_949227_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|333aa|down_7|NZ_CP016076.1_949383_950382_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|126aa|down_8|NZ_CP016076.1_950381_950759_+	NA	NA|107aa|down_9|NZ_CP016076.1_951084_951405_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	2	2218514-2218791	1,2	PILER-CR,CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CGAGTCCTCCCCGCGCAGGCGGGGGTGAGCCG,GTCCTCCCCGCGCAGGCGGGGGTGAGCCG	32,29	0	0	NA	NA	NA:NA	2,4	4	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|89aa|up_8|NZ_CP016076.1_2211622_2211889_+,NA|221aa|up_7|NZ_CP016076.1_2211889_2212552_+,NA|172aa|up_6|NZ_CP016076.1_2212548_2213064_+,NA|70aa|up_0|NZ_CP016076.1_2217935_2218145_+,NA|132aa|down_4|NZ_CP016076.1_2222842_2223238_+,NA|200aa|down_6|NZ_CP016076.1_2223850_2224450_-	NA|194aa|up_9|NZ_CP016076.1_2210860_2211442_-	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|89aa|up_8|NZ_CP016076.1_2211622_2211889_+	NA	NA|221aa|up_7|NZ_CP016076.1_2211889_2212552_+	NA	NA|172aa|up_6|NZ_CP016076.1_2212548_2213064_+	NA	NA|389aa|up_5|NZ_CP016076.1_2213121_2214288_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|300aa|up_4|NZ_CP016076.1_2214370_2215270_-	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|200aa|up_3|NZ_CP016076.1_2215472_2216072_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|154aa|up_2|NZ_CP016076.1_2216546_2217008_-	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|211aa|up_1|NZ_CP016076.1_2217306_2217939_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|70aa|up_0|NZ_CP016076.1_2217935_2218145_+	NA	NA|244aa|down_0|NZ_CP016076.1_2218866_2219598_+	PRK14024, PRK14024, phosphoribosyl isomerase A; Provisional	NA|257aa|down_1|NZ_CP016076.1_2219915_2220686_-	pfam02517, Abi, CAAX protease self-immunity	NA|358aa|down_2|NZ_CP016076.1_2220988_2222062_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|258aa|down_3|NZ_CP016076.1_2222072_2222846_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|132aa|down_4|NZ_CP016076.1_2222842_2223238_+	NA	NA|128aa|down_5|NZ_CP016076.1_2223237_2223621_+	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|200aa|down_6|NZ_CP016076.1_2223850_2224450_-	NA	NA|66aa|down_7|NZ_CP016076.1_2224647_2224845_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|332aa|down_8|NZ_CP016076.1_2224810_2225806_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|down_9|NZ_CP016076.1_2225912_2226101_+	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	3	2236413-2237051	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTCCTCCCCGCGTAGGCGGGGGTGAGCC,GTCCTCCCCGCGTAGGCGGGGGTGAGCCG,GTCCTCCCCGCGTAGGCGGGGGTGAGCC	28,29,28	0	0	NA	NA	NA:NA:NA	6,9,10	10	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|80aa|up_9|NZ_CP016076.1_2226994_2227234_+,NA|263aa|down_3|NZ_CP016076.1_2240345_2241134_+,NA|117aa|down_4|NZ_CP016076.1_2241130_2241481_+	NA|80aa|up_9|NZ_CP016076.1_2226994_2227234_+	NA	NA|150aa|up_8|NZ_CP016076.1_2227619_2228069_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|205aa|up_7|NZ_CP016076.1_2228076_2228691_-	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|541aa|up_6|NZ_CP016076.1_2228765_2230388_+	PRK13571, PRK13571, anthranilate synthase component I; Provisional	NA|265aa|up_5|NZ_CP016076.1_2230332_2231127_+	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp)	NA|271aa|up_4|NZ_CP016076.1_2231302_2232115_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|418aa|up_3|NZ_CP016076.1_2232111_2233365_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|272aa|up_2|NZ_CP016076.1_2233364_2234180_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|186aa|up_1|NZ_CP016076.1_2234317_2234875_+	pfam05685, Uma2, Putative restriction endonuclease	NA|392aa|up_0|NZ_CP016076.1_2234952_2236128_+	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|242aa|down_0|NZ_CP016076.1_2237327_2238053_+	PRK00023, cmk, (d)CMP kinase	NA|241aa|down_1|NZ_CP016076.1_2238049_2238772_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|473aa|down_2|NZ_CP016076.1_2238768_2240187_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|263aa|down_3|NZ_CP016076.1_2240345_2241134_+	NA	NA|117aa|down_4|NZ_CP016076.1_2241130_2241481_+	NA	NA|1133aa|down_5|NZ_CP016076.1_2241596_2244995_-	pfam09992, NAGPA, Phosphodiester glycosidase	NA|319aa|down_6|NZ_CP016076.1_2245566_2246523_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|533aa|down_7|NZ_CP016076.1_2246519_2248118_-	PRK03893, PRK03893, putative sialic acid transporter; Provisional	NA|230aa|down_8|NZ_CP016076.1_2248216_2248906_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|183aa|down_9|NZ_CP016076.1_2249388_2249937_-	PRK14781, PRK14781, lipoprotein signal peptidase; Provisional
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	4	2264488-2264943	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CGGCTCACCCCCGCTTGCGCGGGGCGGAC,CGGCTCACCCCCGCTTGCGCGGGGCGGAC,GTCCGCCCCGCGCAAGCGGGGGTGAGCC	29,29,28	0	0	NA	NA	NA:NA:NA	7,7,6	7	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|102aa|down_0|NZ_CP016076.1_2265183_2265489_-,NA|144aa|down_1|NZ_CP016076.1_2265481_2265913_-	NA|204aa|up_9|NZ_CP016076.1_2251561_2252173_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|314aa|up_8|NZ_CP016076.1_2252335_2253277_-	pfam11599, AviRa, RRNA methyltransferase AviRa	NA|389aa|up_7|NZ_CP016076.1_2254110_2255277_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|525aa|up_6|NZ_CP016076.1_2255269_2256844_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|332aa|up_5|NZ_CP016076.1_2256840_2257836_+	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|434aa|up_4|NZ_CP016076.1_2258263_2259565_+	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|495aa|up_3|NZ_CP016076.1_2259551_2261036_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|433aa|up_2|NZ_CP016076.1_2261122_2262421_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|288aa|up_1|NZ_CP016076.1_2262417_2263281_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|up_0|NZ_CP016076.1_2263539_2264250_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|102aa|down_0|NZ_CP016076.1_2265183_2265489_-	NA	NA|144aa|down_1|NZ_CP016076.1_2265481_2265913_-	NA	NA|225aa|down_2|NZ_CP016076.1_2266287_2266962_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|254aa|down_3|NZ_CP016076.1_2267053_2267815_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|314aa|down_4|NZ_CP016076.1_2267897_2268839_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|348aa|down_5|NZ_CP016076.1_2269172_2270216_+	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|572aa|down_6|NZ_CP016076.1_2270640_2272356_-	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family	NA|573aa|down_7|NZ_CP016076.1_2272614_2274333_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|675aa|down_8|NZ_CP016076.1_2274316_2276341_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|426aa|down_9|NZ_CP016076.1_2276337_2277615_+	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	5	2479012-2479418	4,4,5	PILER-CR,CRT,CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GGTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC,GGTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC	38,38,37	0	0	NA	NA	NA:NA:NA	4,5,5	5	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|208aa|down_2|NZ_CP016076.1_2481478_2482102_+,NA|356aa|down_5|NZ_CP016076.1_2485453_2486521_+	NA|182aa|up_9|NZ_CP016076.1_2466714_2467260_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|477aa|up_8|NZ_CP016076.1_2467265_2468696_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|207aa|up_7|NZ_CP016076.1_2468763_2469384_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|400aa|up_6|NZ_CP016076.1_2469578_2470778_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|167aa|up_5|NZ_CP016076.1_2471347_2471848_-	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_4|NZ_CP016076.1_2472139_2472514_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|200aa|up_3|NZ_CP016076.1_2473704_2474304_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|343aa|up_2|NZ_CP016076.1_2474584_2475613_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|147aa|up_1|NZ_CP016076.1_2475778_2476219_+	pfam02699, YajC, Preprotein translocase subunit	NA|772aa|up_0|NZ_CP016076.1_2476502_2478818_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|271aa|down_0|NZ_CP016076.1_2479564_2480377_-	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|234aa|down_1|NZ_CP016076.1_2480535_2481237_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|208aa|down_2|NZ_CP016076.1_2481478_2482102_+	NA	NA|630aa|down_3|NZ_CP016076.1_2482541_2484431_-	pfam07907, YibE_F, YibE/F-like protein	NA|180aa|down_4|NZ_CP016076.1_2484427_2484967_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|356aa|down_5|NZ_CP016076.1_2485453_2486521_+	NA	NA|398aa|down_6|NZ_CP016076.1_2487106_2488300_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|1265aa|down_7|NZ_CP016076.1_2488792_2492587_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|876aa|down_8|NZ_CP016076.1_2492813_2495441_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|481aa|down_9|NZ_CP016076.1_2495769_2497212_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	6	2504212-2504428	6,5,5	CRISPRCasFinder,PILER-CR,CRT	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CGGACGGAACAACCCCGCGCGTGCGGGGAGGACA,CGGAACAACCCCGCGCGTGCGGGGAGGAC,CGGAACAACCCCGCGCGTGCGGGGAGGAC	34,29,29	0	0	NA	NA	NA:NA:NA	3,3,3	3	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|213aa|up_5|NZ_CP016076.1_2497615_2498254_-,NA|162aa|up_1|NZ_CP016076.1_2503043_2503529_-,NA|98aa|down_3|NZ_CP016076.1_2514660_2514954_-,NA|228aa|down_6|NZ_CP016076.1_2516500_2517184_+,NA|91aa|down_7|NZ_CP016076.1_2517276_2517549_+,NA|95aa|down_8|NZ_CP016076.1_2517728_2518013_+	NA|398aa|up_9|NZ_CP016076.1_2487106_2488300_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|1265aa|up_8|NZ_CP016076.1_2488792_2492587_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|876aa|up_7|NZ_CP016076.1_2492813_2495441_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|481aa|up_6|NZ_CP016076.1_2495769_2497212_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|213aa|up_5|NZ_CP016076.1_2497615_2498254_-	NA	NA|144aa|up_4|NZ_CP016076.1_2498831_2499263_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|524aa|up_3|NZ_CP016076.1_2499595_2501167_-	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]	NA|451aa|up_2|NZ_CP016076.1_2501587_2502940_+	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|162aa|up_1|NZ_CP016076.1_2503043_2503529_-	NA	NA|206aa|up_0|NZ_CP016076.1_2503517_2504135_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|522aa|down_0|NZ_CP016076.1_2504770_2506336_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|1467aa|down_1|NZ_CP016076.1_2507020_2511421_+	cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins	NA|881aa|down_2|NZ_CP016076.1_2511921_2514564_+	cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins	NA|98aa|down_3|NZ_CP016076.1_2514660_2514954_-	NA	NA|273aa|down_4|NZ_CP016076.1_2515260_2516079_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|60aa|down_5|NZ_CP016076.1_2516081_2516261_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|228aa|down_6|NZ_CP016076.1_2516500_2517184_+	NA	NA|91aa|down_7|NZ_CP016076.1_2517276_2517549_+	NA	NA|95aa|down_8|NZ_CP016076.1_2517728_2518013_+	NA	NA|838aa|down_9|NZ_CP016076.1_2518507_2521021_+	cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	7	3105613-3105717	7	CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-C, Type I-U?,Type I-U	GAGGTACCCGCTCGTCCGGTGGCCGAG	27	0	0	NA	NA	NA	1	1	TypeI-C,TypeI-U,TypeI-U?	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|144aa|up_9|NZ_CP016076.1_3095622_3096054_-,NA|96aa|down_3|NZ_CP016076.1_3107655_3107943_+,NA|127aa|down_4|NZ_CP016076.1_3107987_3108368_+,NA|132aa|down_6|NZ_CP016076.1_3109717_3110113_-,NA|80aa|down_7|NZ_CP016076.1_3110109_3110349_-,NA|98aa|down_8|NZ_CP016076.1_3110345_3110639_-,NA|112aa|down_9|NZ_CP016076.1_3110635_3110971_-	NA|144aa|up_9|NZ_CP016076.1_3095622_3096054_-	NA	NA|239aa|up_8|NZ_CP016076.1_3096217_3096934_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|298aa|up_7|NZ_CP016076.1_3097026_3097920_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|191aa|up_6|NZ_CP016076.1_3098081_3098654_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|629aa|up_5|NZ_CP016076.1_3098809_3100696_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|414aa|up_4|NZ_CP016076.1_3100769_3102011_-	pfam17885, Smoa_sbd, Styrene monooxygenase A putative substrate binding domain	NA|199aa|up_3|NZ_CP016076.1_3102190_3102787_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|119aa|up_2|NZ_CP016076.1_3102761_3103118_-	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|147aa|up_1|NZ_CP016076.1_3103143_3103584_-	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|431aa|up_0|NZ_CP016076.1_3103573_3104866_-	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|190aa|down_0|NZ_CP016076.1_3105881_3106451_+	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family	NA|187aa|down_1|NZ_CP016076.1_3106443_3107004_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|192aa|down_2|NZ_CP016076.1_3107054_3107630_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|96aa|down_3|NZ_CP016076.1_3107655_3107943_+	NA	NA|127aa|down_4|NZ_CP016076.1_3107987_3108368_+	NA	NA|302aa|down_5|NZ_CP016076.1_3108695_3109601_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|132aa|down_6|NZ_CP016076.1_3109717_3110113_-	NA	NA|80aa|down_7|NZ_CP016076.1_3110109_3110349_-	NA	NA|98aa|down_8|NZ_CP016076.1_3110345_3110639_-	NA	NA|112aa|down_9|NZ_CP016076.1_3110635_3110971_-	NA
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	8	3113702-3114476	6,6,8	CRT,PILER-CR,CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-C, Type I-U?,Type I-U	GGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC	38,37,37	0	0	NA	NA	NA:NA:NA	10,10,10	10	TypeI-C,TypeI-U,TypeI-U?	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|96aa|up_8|NZ_CP016076.1_3107655_3107943_+,NA|127aa|up_7|NZ_CP016076.1_3107987_3108368_+,NA|132aa|up_5|NZ_CP016076.1_3109717_3110113_-,NA|80aa|up_4|NZ_CP016076.1_3110109_3110349_-,NA|98aa|up_3|NZ_CP016076.1_3110345_3110639_-,NA|112aa|up_2|NZ_CP016076.1_3110635_3110971_-,NA	NA|192aa|up_9|NZ_CP016076.1_3107054_3107630_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|96aa|up_8|NZ_CP016076.1_3107655_3107943_+	NA	NA|127aa|up_7|NZ_CP016076.1_3107987_3108368_+	NA	NA|302aa|up_6|NZ_CP016076.1_3108695_3109601_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|132aa|up_5|NZ_CP016076.1_3109717_3110113_-	NA	NA|80aa|up_4|NZ_CP016076.1_3110109_3110349_-	NA	NA|98aa|up_3|NZ_CP016076.1_3110345_3110639_-	NA	NA|112aa|up_2|NZ_CP016076.1_3110635_3110971_-	NA	NA|408aa|up_1|NZ_CP016076.1_3111259_3112483_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|209aa|up_0|NZ_CP016076.1_3112793_3113420_+	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|164aa|down_0|NZ_CP016076.1_3114764_3115256_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	cas3|739aa|down_1|NZ_CP016076.1_3116252_3118469_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|209aa|down_2|NZ_CP016076.1_3118507_3119134_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|585aa|down_3|NZ_CP016076.1_3119133_3120888_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|298aa|down_4|NZ_CP016076.1_3120963_3121857_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|212aa|down_5|NZ_CP016076.1_3121869_3122505_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|336aa|down_6|NZ_CP016076.1_3122506_3123514_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|103aa|down_7|NZ_CP016076.1_3123498_3123807_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|252aa|down_8|NZ_CP016076.1_3125110_3125866_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|631aa|down_9|NZ_CP016076.1_3126162_3128055_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	9	3123936-3125008	7,9,7	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-C, Type I-U?,Type I-U	GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC	37,37,37	0	0	NA	NA	NA:NA:NA	12,13,14	14	TypeI-C,TypeI-U,TypeI-U?	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|284aa|down_2|NZ_CP016076.1_3128364_3129216_+	NA|408aa|up_9|NZ_CP016076.1_3111259_3112483_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|209aa|up_8|NZ_CP016076.1_3112793_3113420_+	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|164aa|up_7|NZ_CP016076.1_3114764_3115256_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	cas3|739aa|up_6|NZ_CP016076.1_3116252_3118469_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|209aa|up_5|NZ_CP016076.1_3118507_3119134_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|585aa|up_4|NZ_CP016076.1_3119133_3120888_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|298aa|up_3|NZ_CP016076.1_3120963_3121857_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|212aa|up_2|NZ_CP016076.1_3121869_3122505_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|336aa|up_1|NZ_CP016076.1_3122506_3123514_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|103aa|up_0|NZ_CP016076.1_3123498_3123807_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|252aa|down_0|NZ_CP016076.1_3125110_3125866_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|631aa|down_1|NZ_CP016076.1_3126162_3128055_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|284aa|down_2|NZ_CP016076.1_3128364_3129216_+	NA	NA|125aa|down_3|NZ_CP016076.1_3129827_3130202_+	pfam01382, Avidin, Avidin family	NA|135aa|down_4|NZ_CP016076.1_3130831_3131236_-	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|289aa|down_5|NZ_CP016076.1_3132932_3133799_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|1161aa|down_6|NZ_CP016076.1_3133898_3137381_-	pfam06283, ThuA, Trehalose utilisation	NA|397aa|down_7|NZ_CP016076.1_3138174_3139365_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|387aa|down_8|NZ_CP016076.1_3139444_3140605_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|272aa|down_9|NZ_CP016076.1_3141172_3141988_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	10	3153314-3153391	10	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CGTTGCGATCCTCACCGGCTCAG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|122aa|up_3|NZ_CP016076.1_3147403_3147769_-,NA|119aa|up_2|NZ_CP016076.1_3148182_3148539_+,NA	NA|387aa|up_9|NZ_CP016076.1_3139444_3140605_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|272aa|up_8|NZ_CP016076.1_3141172_3141988_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|341aa|up_7|NZ_CP016076.1_3142016_3143039_-	pfam09084, NMT1, NMT1/THI5 like	NA|293aa|up_6|NZ_CP016076.1_3143107_3143986_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|423aa|up_5|NZ_CP016076.1_3144186_3145455_+	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway	NA|503aa|up_4|NZ_CP016076.1_3145757_3147266_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|122aa|up_3|NZ_CP016076.1_3147403_3147769_-	NA	NA|119aa|up_2|NZ_CP016076.1_3148182_3148539_+	NA	NA|929aa|up_1|NZ_CP016076.1_3148582_3151369_-	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|271aa|up_0|NZ_CP016076.1_3152061_3152874_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|184aa|down_0|NZ_CP016076.1_3153642_3154194_+	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|289aa|down_1|NZ_CP016076.1_3154315_3155182_-	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|242aa|down_2|NZ_CP016076.1_3156320_3157046_+	pfam13250, DUF4041, Domain of unknown function (DUF4041)	NA|302aa|down_3|NZ_CP016076.1_3157397_3158303_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|531aa|down_4|NZ_CP016076.1_3158514_3160107_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|276aa|down_5|NZ_CP016076.1_3160402_3161230_-	pfam04951, Peptidase_M55, D-aminopeptidase	NA|607aa|down_6|NZ_CP016076.1_3161580_3163401_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|342aa|down_7|NZ_CP016076.1_3163435_3164461_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_8|NZ_CP016076.1_3164457_3165435_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|689aa|down_9|NZ_CP016076.1_3165435_3167502_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	11	3177574-3177664	11	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTATCGGCCCCGCGCACGCGGGGATGGACC	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|143aa|up_6|NZ_CP016076.1_3170719_3171148_+,NA|83aa|down_3|NZ_CP016076.1_3180028_3180277_-,NA|63aa|down_8|NZ_CP016076.1_3185767_3185956_-	NA|364aa|up_9|NZ_CP016076.1_3167958_3169050_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|130aa|up_8|NZ_CP016076.1_3169579_3169969_+	TIGR00632, HpaII_very_short_patch_repair_endonuclease, DNA mismatch endonuclease Vsr	NA|67aa|up_7|NZ_CP016076.1_3170260_3170461_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|143aa|up_6|NZ_CP016076.1_3170719_3171148_+	NA	NA|215aa|up_5|NZ_CP016076.1_3171214_3171859_-	COG3897, COG3897, Predicted methyltransferase [General function prediction only]	NA|188aa|up_4|NZ_CP016076.1_3172097_3172661_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|309aa|up_3|NZ_CP016076.1_3173102_3174029_-	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein	NA|655aa|up_2|NZ_CP016076.1_3174025_3175990_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|189aa|up_1|NZ_CP016076.1_3176103_3176670_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|265aa|up_0|NZ_CP016076.1_3176686_3177481_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|132aa|down_0|NZ_CP016076.1_3177758_3178154_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|156aa|down_1|NZ_CP016076.1_3178303_3178771_+	cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase	NA|266aa|down_2|NZ_CP016076.1_3179044_3179842_+	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|83aa|down_3|NZ_CP016076.1_3180028_3180277_-	NA	NA|128aa|down_4|NZ_CP016076.1_3180449_3180833_-	pfam11236, DUF3037, Protein of unknown function (DUF3037)	NA|249aa|down_5|NZ_CP016076.1_3180829_3181576_-	cd05124, AFK, Catalytic domain of Actin-Fragmin Kinase	NA|473aa|down_6|NZ_CP016076.1_3181885_3183304_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|634aa|down_7|NZ_CP016076.1_3183435_3185337_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|63aa|down_8|NZ_CP016076.1_3185767_3185956_-	NA	NA|154aa|down_9|NZ_CP016076.1_3185921_3186383_+	pfam12680, SnoaL_2, SnoaL-like domain
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	12	3242850-3242962	12	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTGGCACCGGCCCTTCGGGACCGGTGAGGATCGCAACC	38	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA	NA|454aa|up_9|NZ_CP016076.1_3230980_3232342_+	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|265aa|up_8|NZ_CP016076.1_3232382_3233177_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|256aa|up_7|NZ_CP016076.1_3233230_3233998_-	pfam08445, FR47, FR47-like protein	NA|291aa|up_6|NZ_CP016076.1_3234214_3235087_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|192aa|up_5|NZ_CP016076.1_3235215_3235791_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|154aa|up_4|NZ_CP016076.1_3236071_3236533_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|294aa|up_3|NZ_CP016076.1_3236733_3237615_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|235aa|up_2|NZ_CP016076.1_3238145_3238850_-	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading	NA|322aa|up_1|NZ_CP016076.1_3239222_3240188_+	cd08244, MDR_enoyl_red, Possible enoyl reductase	NA|425aa|up_0|NZ_CP016076.1_3241204_3242479_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|414aa|down_0|NZ_CP016076.1_3243496_3244738_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|335aa|down_1|NZ_CP016076.1_3244865_3245870_-	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22	NA|121aa|down_2|NZ_CP016076.1_3246265_3246628_+	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N)	NA|459aa|down_3|NZ_CP016076.1_3246888_3248265_+	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|310aa|down_4|NZ_CP016076.1_3248769_3249699_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|444aa|down_5|NZ_CP016076.1_3250432_3251764_+	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655	NA|409aa|down_6|NZ_CP016076.1_3251942_3253169_+	cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like	NA|176aa|down_7|NZ_CP016076.1_3253426_3253954_-	pfam12867, DinB_2, DinB superfamily	NA|642aa|down_8|NZ_CP016076.1_3254132_3256058_+	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|117aa|down_9|NZ_CP016076.1_3256268_3256619_-	pfam14534, DUF4440, Domain of unknown function (DUF4440)
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	13	3583528-3584081	13,8,8	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas7,cas5,cas3,cas4,cas1,cas2,DinG	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Unclear	GTTGCGAACCCTCGTAGGGACTATGAAGAC,GTTGCGAACCCTCGTAGGGACTATGAAGAC,GTTGCGAACCCTCGTAGGGACTATGAAGAC	30,30,30	0	0	NA	NA	NA:NA:NA	8,8,8	8	Unclear	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|479aa|down_1|NZ_CP016076.1_3586180_3587617_+,NA|80aa|down_9|NZ_CP016076.1_3596867_3597107_+	NA|161aa|up_9|NZ_CP016076.1_3572610_3573093_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|230aa|up_8|NZ_CP016076.1_3573076_3573766_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|359aa|up_7|NZ_CP016076.1_3573861_3574938_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|517aa|up_6|NZ_CP016076.1_3574974_3576525_-	cd19082, AKR_AKR10A1_2, AKR10A family of aldo-keto reductase (AKR)	NA|491aa|up_5|NZ_CP016076.1_3575939_3577412_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|572aa|up_4|NZ_CP016076.1_3577487_3579203_-	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|380aa|up_3|NZ_CP016076.1_3579031_3580171_-	cd01159, NcnH, Naphthocyclinone hydroxylase	NA|317aa|up_2|NZ_CP016076.1_3580206_3581157_-	cd01171, YXKO-related, B	NA|387aa|up_1|NZ_CP016076.1_3581174_3582335_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|299aa|up_0|NZ_CP016076.1_3582343_3583240_-	cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation	cas6|246aa|down_0|NZ_CP016076.1_3585446_3586184_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|479aa|down_1|NZ_CP016076.1_3586180_3587617_+	NA	cas7|341aa|down_2|NZ_CP016076.1_3587613_3588636_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|225aa|down_3|NZ_CP016076.1_3588632_3589307_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|down_4|NZ_CP016076.1_3589303_3591733_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|165aa|down_5|NZ_CP016076.1_3591732_3592227_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|down_6|NZ_CP016076.1_3592226_3593207_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|down_7|NZ_CP016076.1_3593209_3593473_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|377aa|down_8|NZ_CP016076.1_3595246_3596377_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|80aa|down_9|NZ_CP016076.1_3596867_3597107_+	NA
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	14	3593585-3594674	9,9,14	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas7,cas5,cas3,cas4,cas1,cas2,DinG	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Unclear	GGTCCTCATCTGCCCTAGGAGGGTTCGCAAC,GTTGCGAACCCTCCTAGGGCAGATGAGGAC,GTCCTCATCTGCCCTAGGAGGGTTCGCAAC	31,30,30	0	0	NA	NA	NA:NA:NA	16,16,16	16	Unclear	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|479aa|up_6|NZ_CP016076.1_3586180_3587617_+,NA|80aa|down_1|NZ_CP016076.1_3596867_3597107_+,NA|463aa|down_2|NZ_CP016076.1_3597572_3598961_+,NA|84aa|down_3|NZ_CP016076.1_3599200_3599452_+,NA|403aa|down_5|NZ_CP016076.1_3603062_3604271_+,NA|266aa|down_6|NZ_CP016076.1_3604538_3605336_+,NA|148aa|down_7|NZ_CP016076.1_3605496_3605940_-,NA|187aa|down_8|NZ_CP016076.1_3605943_3606504_-,NA|300aa|down_9|NZ_CP016076.1_3606923_3607823_-	NA|387aa|up_9|NZ_CP016076.1_3581174_3582335_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|299aa|up_8|NZ_CP016076.1_3582343_3583240_-	cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation	cas6|246aa|up_7|NZ_CP016076.1_3585446_3586184_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|479aa|up_6|NZ_CP016076.1_3586180_3587617_+	NA	cas7|341aa|up_5|NZ_CP016076.1_3587613_3588636_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|225aa|up_4|NZ_CP016076.1_3588632_3589307_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|up_3|NZ_CP016076.1_3589303_3591733_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|165aa|up_2|NZ_CP016076.1_3591732_3592227_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NZ_CP016076.1_3592226_3593207_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NZ_CP016076.1_3593209_3593473_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|377aa|down_0|NZ_CP016076.1_3595246_3596377_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|80aa|down_1|NZ_CP016076.1_3596867_3597107_+	NA	NA|463aa|down_2|NZ_CP016076.1_3597572_3598961_+	NA	NA|84aa|down_3|NZ_CP016076.1_3599200_3599452_+	NA	DinG|877aa|down_4|NZ_CP016076.1_3599581_3602212_-	smart00487, DEXDc, DEAD-like helicases superfamily	NA|403aa|down_5|NZ_CP016076.1_3603062_3604271_+	NA	NA|266aa|down_6|NZ_CP016076.1_3604538_3605336_+	NA	NA|148aa|down_7|NZ_CP016076.1_3605496_3605940_-	NA	NA|187aa|down_8|NZ_CP016076.1_3605943_3606504_-	NA	NA|300aa|down_9|NZ_CP016076.1_3606923_3607823_-	NA
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	15	4141873-4142415	15,10,10	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-E	CGACCTACCTCCACATGCGTGGAGATCAC,CGACCTACCTCCACATGCGTGGAGATCAC,CGACCTACCTCCACATGCGTGGAGATCAC	29,29,29	0	0	NA	NA	NA:NA:NA	8,7,6	8	TypeI-E	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|223aa|up_4|NZ_CP016076.1_4133926_4134595_-,NA	NA|190aa|up_9|NZ_CP016076.1_4129218_4129788_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|176aa|up_8|NZ_CP016076.1_4130196_4130724_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|364aa|up_7|NZ_CP016076.1_4130961_4132053_+	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|206aa|up_6|NZ_CP016076.1_4132049_4132667_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|343aa|up_5|NZ_CP016076.1_4132630_4133659_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|223aa|up_4|NZ_CP016076.1_4133926_4134595_-	NA	NA|630aa|up_3|NZ_CP016076.1_4134591_4136481_-	TIGR03975, hypothetical_protein_PPSIR1_38941, ribosomal peptide maturation radical SAM protein 1	NA|590aa|up_2|NZ_CP016076.1_4136723_4138493_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|449aa|up_1|NZ_CP016076.1_4138499_4139846_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|254aa|up_0|NZ_CP016076.1_4141097_4141859_-	cd02037, Mrp_NBP35, Mrp/NBP35 ATP-binding protein family	cas2|102aa|down_0|NZ_CP016076.1_4142433_4142739_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|down_1|NZ_CP016076.1_4142743_4143718_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|240aa|down_2|NZ_CP016076.1_4143714_4144434_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|down_3|NZ_CP016076.1_4144348_4145098_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|down_4|NZ_CP016076.1_4145094_4146282_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|240aa|down_5|NZ_CP016076.1_4146278_4146998_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|537aa|down_6|NZ_CP016076.1_4146990_4148601_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|914aa|down_7|NZ_CP016076.1_4150667_4153409_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|222aa|down_8|NZ_CP016076.1_4155035_4155701_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|234aa|down_9|NZ_CP016076.1_4155739_4156441_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	16	4149099-4150648	11,16,11,17	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-E	CGACCAACCTCCACACGGGTGGAGAGCAC,GTGCTCTCCACCCGTGTGGAGGTTGGTCG,GTGCTCTCCACCCGTGTGGAGGTTGGTCGNN,GTGCTCTCCACCCGTGTGGAGGTTGGTCG	29,29,31,29	0	0	NA	NA	NA:NA:NA:NA	21,23,25,23	25	TypeI-E	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|51aa|down_5|NZ_CP016076.1_4158625_4158778_+,NA|153aa|down_6|NZ_CP016076.1_4159166_4159625_-,NA|78aa|down_7|NZ_CP016076.1_4159719_4159953_-	NA|590aa|up_9|NZ_CP016076.1_4136723_4138493_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|449aa|up_8|NZ_CP016076.1_4138499_4139846_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|254aa|up_7|NZ_CP016076.1_4141097_4141859_-	cd02037, Mrp_NBP35, Mrp/NBP35 ATP-binding protein family	cas2|102aa|up_6|NZ_CP016076.1_4142433_4142739_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_5|NZ_CP016076.1_4142743_4143718_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|240aa|up_4|NZ_CP016076.1_4143714_4144434_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_3|NZ_CP016076.1_4144348_4145098_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_2|NZ_CP016076.1_4145094_4146282_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|240aa|up_1|NZ_CP016076.1_4146278_4146998_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|537aa|up_0|NZ_CP016076.1_4146990_4148601_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|914aa|down_0|NZ_CP016076.1_4150667_4153409_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|222aa|down_1|NZ_CP016076.1_4155035_4155701_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|234aa|down_2|NZ_CP016076.1_4155739_4156441_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|301aa|down_3|NZ_CP016076.1_4156526_4157429_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|173aa|down_4|NZ_CP016076.1_4157512_4158031_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|51aa|down_5|NZ_CP016076.1_4158625_4158778_+	NA	NA|153aa|down_6|NZ_CP016076.1_4159166_4159625_-	NA	NA|78aa|down_7|NZ_CP016076.1_4159719_4159953_-	NA	NA|320aa|down_8|NZ_CP016076.1_4160219_4161179_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|down_9|NZ_CP016076.1_4161175_4161373_+	pfam04149, DUF397, Domain of unknown function (DUF397)
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	17	4153631-4154875	12,18,12	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Type I-E	GACCAACCTCCACGTCCGTGGAGAGCAC,GTGCTCTCCACGGACGTGGAGGTTGGTCG,GTGCTCTCCACGGACGTGGAGGTTGGTCG	28,29,29	0	0	NA	NA	NA:NA:NA	17,20,20	20	TypeI-E	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|51aa|down_4|NZ_CP016076.1_4158625_4158778_+,NA|153aa|down_5|NZ_CP016076.1_4159166_4159625_-,NA|78aa|down_6|NZ_CP016076.1_4159719_4159953_-,NA|58aa|down_9|NZ_CP016076.1_4161436_4161610_-	NA|449aa|up_9|NZ_CP016076.1_4138499_4139846_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|254aa|up_8|NZ_CP016076.1_4141097_4141859_-	cd02037, Mrp_NBP35, Mrp/NBP35 ATP-binding protein family	cas2|102aa|up_7|NZ_CP016076.1_4142433_4142739_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_6|NZ_CP016076.1_4142743_4143718_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|240aa|up_5|NZ_CP016076.1_4143714_4144434_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_4|NZ_CP016076.1_4144348_4145098_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_3|NZ_CP016076.1_4145094_4146282_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|240aa|up_2|NZ_CP016076.1_4146278_4146998_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|537aa|up_1|NZ_CP016076.1_4146990_4148601_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|914aa|up_0|NZ_CP016076.1_4150667_4153409_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|222aa|down_0|NZ_CP016076.1_4155035_4155701_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|234aa|down_1|NZ_CP016076.1_4155739_4156441_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|301aa|down_2|NZ_CP016076.1_4156526_4157429_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|173aa|down_3|NZ_CP016076.1_4157512_4158031_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|51aa|down_4|NZ_CP016076.1_4158625_4158778_+	NA	NA|153aa|down_5|NZ_CP016076.1_4159166_4159625_-	NA	NA|78aa|down_6|NZ_CP016076.1_4159719_4159953_-	NA	NA|320aa|down_7|NZ_CP016076.1_4160219_4161179_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|down_8|NZ_CP016076.1_4161175_4161373_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|58aa|down_9|NZ_CP016076.1_4161436_4161610_-	NA
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	18	4170721-4171272	19,13,13	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GGTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCAC,GGTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCAC,GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC	38,38,37	0	0	NA	NA	NA:NA:NA	7,7,6	7	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|58aa|up_8|NZ_CP016076.1_4161436_4161610_-,NA|46aa|up_7|NZ_CP016076.1_4161664_4161802_-,NA|82aa|up_6|NZ_CP016076.1_4161936_4162182_-,NA|56aa|up_3|NZ_CP016076.1_4165444_4165612_-,NA|101aa|down_2|NZ_CP016076.1_4173302_4173605_-	NA|66aa|up_9|NZ_CP016076.1_4161175_4161373_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|58aa|up_8|NZ_CP016076.1_4161436_4161610_-	NA	NA|46aa|up_7|NZ_CP016076.1_4161664_4161802_-	NA	NA|82aa|up_6|NZ_CP016076.1_4161936_4162182_-	NA	NA|197aa|up_5|NZ_CP016076.1_4162213_4162804_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|274aa|up_4|NZ_CP016076.1_4162733_4163555_-	pfam13471, Transglut_core3, Transglutaminase-like superfamily	NA|56aa|up_3|NZ_CP016076.1_4165444_4165612_-	NA	NA|378aa|up_2|NZ_CP016076.1_4167266_4168400_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|492aa|up_1|NZ_CP016076.1_4168566_4170042_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_0|NZ_CP016076.1_4170038_4170713_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|299aa|down_0|NZ_CP016076.1_4171516_4172413_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|203aa|down_1|NZ_CP016076.1_4172569_4173178_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|101aa|down_2|NZ_CP016076.1_4173302_4173605_-	NA	NA|292aa|down_3|NZ_CP016076.1_4174108_4174984_-	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|207aa|down_4|NZ_CP016076.1_4175593_4176214_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|337aa|down_5|NZ_CP016076.1_4177342_4178353_+	cd18618, GH43_Xsa43E-like, Glycosyl hydrolase family 43, including Butyrivibrio proteoclasticus arabinofuranosidase Xsa43E	NA|484aa|down_6|NZ_CP016076.1_4178447_4179899_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|388aa|down_7|NZ_CP016076.1_4180378_4181542_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|673aa|down_8|NZ_CP016076.1_4181572_4183591_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|281aa|down_9|NZ_CP016076.1_4183716_4184559_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	19	4176311-4176644	20,14,14	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTTGCGATCCTCACCGGCCCCGAAGGGCCGGTGCCACC,GTTGCGATCCTCACCGGCCCCGAAGGGCCGGTGCCAC,TCCGTGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC	38,37,42	0	0	NA	NA	NA:NA:NA	4,4,2	4	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|56aa|up_8|NZ_CP016076.1_4165444_4165612_-,NA|101aa|up_2|NZ_CP016076.1_4173302_4173605_-,NA	NA|274aa|up_9|NZ_CP016076.1_4162733_4163555_-	pfam13471, Transglut_core3, Transglutaminase-like superfamily	NA|56aa|up_8|NZ_CP016076.1_4165444_4165612_-	NA	NA|378aa|up_7|NZ_CP016076.1_4167266_4168400_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|492aa|up_6|NZ_CP016076.1_4168566_4170042_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_5|NZ_CP016076.1_4170038_4170713_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|299aa|up_4|NZ_CP016076.1_4171516_4172413_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|203aa|up_3|NZ_CP016076.1_4172569_4173178_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|101aa|up_2|NZ_CP016076.1_4173302_4173605_-	NA	NA|292aa|up_1|NZ_CP016076.1_4174108_4174984_-	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|207aa|up_0|NZ_CP016076.1_4175593_4176214_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|337aa|down_0|NZ_CP016076.1_4177342_4178353_+	cd18618, GH43_Xsa43E-like, Glycosyl hydrolase family 43, including Butyrivibrio proteoclasticus arabinofuranosidase Xsa43E	NA|484aa|down_1|NZ_CP016076.1_4178447_4179899_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|388aa|down_2|NZ_CP016076.1_4180378_4181542_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|673aa|down_3|NZ_CP016076.1_4181572_4183591_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|281aa|down_4|NZ_CP016076.1_4183716_4184559_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|258aa|down_5|NZ_CP016076.1_4184558_4185332_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|445aa|down_6|NZ_CP016076.1_4185647_4186982_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|345aa|down_7|NZ_CP016076.1_4187211_4188246_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1405aa|down_8|NZ_CP016076.1_4188568_4192783_-	pfam07532, Big_4, Bacterial Ig-like domain (group 4)	NA|259aa|down_9|NZ_CP016076.1_4193059_4193836_-	pfam10067, DUF2306, Predicted membrane protein (DUF2306)
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	20	4205594-4206588	21,15,15	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTTGCGATCCTCACCGGCCCCGAAGGGCCGGTGCCAC,GTTGCGATCCTCACCGGCCCCGNAGGGCCGGTGCCAC,GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC	37,37,37	0	0	NA	NA	NA:NA:NA	13,13,12	13	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|75aa|up_3|NZ_CP016076.1_4203532_4203757_+,NA|61aa|up_1|NZ_CP016076.1_4205022_4205205_+,NA|97aa|up_0|NZ_CP016076.1_4205276_4205567_+,NA|97aa|down_4|NZ_CP016076.1_4214385_4214676_-,NA|242aa|down_6|NZ_CP016076.1_4215777_4216503_-	NA|380aa|up_9|NZ_CP016076.1_4195122_4196262_+	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|209aa|up_8|NZ_CP016076.1_4196258_4196885_+	TIGR04037, predicted_flavoprotein, LLM-partnered FMN reductase, CE1759 family	NA|137aa|up_7|NZ_CP016076.1_4197016_4197427_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|643aa|up_6|NZ_CP016076.1_4197683_4199612_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|244aa|up_5|NZ_CP016076.1_4199735_4200467_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|876aa|up_4|NZ_CP016076.1_4200580_4203208_-	PRK09234, fbiC, FO synthase; Reviewed	NA|75aa|up_3|NZ_CP016076.1_4203532_4203757_+	NA	NA|365aa|up_2|NZ_CP016076.1_4203783_4204878_-	pfam12796, Ank_2, Ankyrin repeats (3 copies)	NA|61aa|up_1|NZ_CP016076.1_4205022_4205205_+	NA	NA|97aa|up_0|NZ_CP016076.1_4205276_4205567_+	NA	NA|430aa|down_0|NZ_CP016076.1_4206940_4208230_+	pfam04143, Sulf_transp, Sulphur transport	NA|928aa|down_1|NZ_CP016076.1_4209587_4212371_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|65aa|down_2|NZ_CP016076.1_4212762_4212957_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|303aa|down_3|NZ_CP016076.1_4212953_4213862_-	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|97aa|down_4|NZ_CP016076.1_4214385_4214676_-	NA	NA|93aa|down_5|NZ_CP016076.1_4215257_4215536_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|242aa|down_6|NZ_CP016076.1_4215777_4216503_-	NA	NA|285aa|down_7|NZ_CP016076.1_4217161_4218016_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|352aa|down_8|NZ_CP016076.1_4219111_4220167_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|584aa|down_9|NZ_CP016076.1_4220163_4221915_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	21	4282076-4282287	22,16,16	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTAAGCCCCGCGCAAGCGGGGGTGGTCC,GTAAGCCCCGCGCAAGCGGGGGTGGTCCG,GTAAGCCCCGCGCAAGCGGGGGTGGTCCG	28,29,29	0	0	NA	NA	NA:NA:NA	3,3,3	3	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|195aa|up_5|NZ_CP016076.1_4276023_4276608_+,NA	NA|265aa|up_9|NZ_CP016076.1_4271144_4271939_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|407aa|up_8|NZ_CP016076.1_4272095_4273316_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|404aa|up_7|NZ_CP016076.1_4273656_4274868_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|65aa|up_6|NZ_CP016076.1_4275163_4275358_+	pfam13459, Fer4_15, 4Fe-4S single cluster domain	NA|195aa|up_5|NZ_CP016076.1_4276023_4276608_+	NA	NA|529aa|up_4|NZ_CP016076.1_4276607_4278194_+	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|293aa|up_3|NZ_CP016076.1_4278190_4279069_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|285aa|up_2|NZ_CP016076.1_4279219_4280074_-	cd13956, PT_UbiA, UbiA family of prenyltransferases (PTases)	NA|172aa|up_1|NZ_CP016076.1_4280357_4280873_+	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|346aa|up_0|NZ_CP016076.1_4280869_4281907_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|127aa|down_0|NZ_CP016076.1_4282516_4282897_-	COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|372aa|down_1|NZ_CP016076.1_4284516_4285632_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|377aa|down_2|NZ_CP016076.1_4286000_4287131_-	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|399aa|down_3|NZ_CP016076.1_4287865_4289062_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|763aa|down_4|NZ_CP016076.1_4289524_4291813_-	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|338aa|down_5|NZ_CP016076.1_4292100_4293114_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|508aa|down_6|NZ_CP016076.1_4293110_4294634_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|346aa|down_7|NZ_CP016076.1_4295112_4296150_-	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|272aa|down_8|NZ_CP016076.1_4296408_4297224_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|276aa|down_9|NZ_CP016076.1_4297240_4298068_-	PRK12743, PRK12743, SDR family oxidoreductase
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	22	4336651-4336746	23	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CTCGGCGCCCACGCCGGAGCCCGA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|67aa|up_5|NZ_CP016076.1_4330170_4330371_-,NA|93aa|up_3|NZ_CP016076.1_4331429_4331708_+,NA|454aa|up_1|NZ_CP016076.1_4332411_4333773_-,NA|498aa|down_0|NZ_CP016076.1_4337162_4338656_-,NA|265aa|down_1|NZ_CP016076.1_4338894_4339689_+,NA|309aa|down_7|NZ_CP016076.1_4346586_4347513_+	NA|268aa|up_9|NZ_CP016076.1_4317937_4318741_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|265aa|up_8|NZ_CP016076.1_4319095_4319890_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|948aa|up_7|NZ_CP016076.1_4322074_4324918_+	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|1305aa|up_6|NZ_CP016076.1_4325588_4329503_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|67aa|up_5|NZ_CP016076.1_4330170_4330371_-	NA	NA|290aa|up_4|NZ_CP016076.1_4330442_4331312_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|93aa|up_3|NZ_CP016076.1_4331429_4331708_+	NA	NA|125aa|up_2|NZ_CP016076.1_4332008_4332383_-	pfam00754, F5_F8_type_C, F5/8 type C domain	NA|454aa|up_1|NZ_CP016076.1_4332411_4333773_-	NA	NA|518aa|up_0|NZ_CP016076.1_4333775_4335329_-	pfam17874, TPR_MalT, MalT-like TPR region	NA|498aa|down_0|NZ_CP016076.1_4337162_4338656_-	NA	NA|265aa|down_1|NZ_CP016076.1_4338894_4339689_+	NA	NA|319aa|down_2|NZ_CP016076.1_4340044_4341001_-	PRK06197, PRK06197, short chain dehydrogenase; Provisional	NA|312aa|down_3|NZ_CP016076.1_4341139_4342075_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|226aa|down_4|NZ_CP016076.1_4342160_4342838_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|259aa|down_5|NZ_CP016076.1_4342953_4343730_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|387aa|down_6|NZ_CP016076.1_4344392_4345553_+	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|309aa|down_7|NZ_CP016076.1_4346586_4347513_+	NA	NA|308aa|down_8|NZ_CP016076.1_4348260_4349184_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|188aa|down_9|NZ_CP016076.1_4349292_4349856_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	23	4938848-4939115	24,17,17	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	CACCCCCGCGTACGCGGGGAAGAC,CACCCCCGCGTACGCGGGGAAGAC,GGAGCACCCCCGCGTACGCGGGG	24,24,23	0	0	NA	NA	NA:NA:NA	4,4,3	4	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|159aa|up_7|NZ_CP016076.1_4928690_4929167_-,NA|140aa|up_4|NZ_CP016076.1_4931370_4931790_-,NA|53aa|down_3|NZ_CP016076.1_4943311_4943470_-	NA|142aa|up_9|NZ_CP016076.1_4924343_4924769_-	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19	NA|1169aa|up_8|NZ_CP016076.1_4925022_4928529_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|159aa|up_7|NZ_CP016076.1_4928690_4929167_-	NA	NA|147aa|up_6|NZ_CP016076.1_4929163_4929604_-	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19	NA|504aa|up_5|NZ_CP016076.1_4929648_4931160_-	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only]	NA|140aa|up_4|NZ_CP016076.1_4931370_4931790_-	NA	NA|867aa|up_3|NZ_CP016076.1_4931964_4934565_+	NF000540, alt_ValS, valine--tRNA ligase	NA|435aa|up_2|NZ_CP016076.1_4935129_4936434_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|238aa|up_1|NZ_CP016076.1_4936433_4937147_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|357aa|up_0|NZ_CP016076.1_4937188_4938259_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|205aa|down_0|NZ_CP016076.1_4939257_4939872_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|312aa|down_1|NZ_CP016076.1_4939940_4940876_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|720aa|down_2|NZ_CP016076.1_4941059_4943219_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|53aa|down_3|NZ_CP016076.1_4943311_4943470_-	NA	NA|242aa|down_4|NZ_CP016076.1_4943466_4944192_-	pfam14065, DUF4255, Protein of unknown function (DUF4255)	NA|1056aa|down_5|NZ_CP016076.1_4944379_4947547_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|211aa|down_6|NZ_CP016076.1_4947676_4948309_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|454aa|down_7|NZ_CP016076.1_4948525_4949887_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|275aa|down_8|NZ_CP016076.1_4950081_4950906_-	PRK14968, PRK14968, putative methyltransferase; Provisional	NA|873aa|down_9|NZ_CP016076.1_4951318_4953937_+	pfam00931, NB-ARC, NB-ARC domain
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	24	5342534-5342863	25,18,18	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GGAACAGCCCCGCGTGCGCGGGGAGAAC,GGAACAGCCCCGCGTGCGCGGGGAGAACNN,GGGAACAGCCCCGCGTGCGCGGGGAGAAC	28,30,29	0	0	NA	NA	NA:NA:NA	5,5,2	5	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|61aa|up_3|NZ_CP016076.1_5339983_5340166_-,NA|94aa|down_2|NZ_CP016076.1_5345202_5345484_-,NA|110aa|down_3|NZ_CP016076.1_5346098_5346428_+,NA|178aa|down_4|NZ_CP016076.1_5346408_5346942_+,NA|114aa|down_6|NZ_CP016076.1_5348212_5348554_+	NA|504aa|up_9|NZ_CP016076.1_5333873_5335385_+	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|317aa|up_8|NZ_CP016076.1_5335435_5336386_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|298aa|up_7|NZ_CP016076.1_5336382_5337276_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|270aa|up_6|NZ_CP016076.1_5337325_5338135_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|338aa|up_5|NZ_CP016076.1_5338131_5339145_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|275aa|up_4|NZ_CP016076.1_5339141_5339966_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|61aa|up_3|NZ_CP016076.1_5339983_5340166_-	NA	NA|145aa|up_2|NZ_CP016076.1_5340419_5340854_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|131aa|up_1|NZ_CP016076.1_5340904_5341297_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|287aa|up_0|NZ_CP016076.1_5341497_5342358_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|383aa|down_0|NZ_CP016076.1_5343079_5344228_-	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|324aa|down_1|NZ_CP016076.1_5344224_5345196_-	TIGR04187, conserved_hypothetical_protein, ATP-grasp ribosomal peptide maturase, SAV_5884 family	NA|94aa|down_2|NZ_CP016076.1_5345202_5345484_-	NA	NA|110aa|down_3|NZ_CP016076.1_5346098_5346428_+	NA	NA|178aa|down_4|NZ_CP016076.1_5346408_5346942_+	NA	NA|281aa|down_5|NZ_CP016076.1_5346953_5347796_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_6|NZ_CP016076.1_5348212_5348554_+	NA	NA|243aa|down_7|NZ_CP016076.1_5348717_5349446_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|251aa|down_8|NZ_CP016076.1_5349442_5350195_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|158aa|down_9|NZ_CP016076.1_5350595_5351069_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	25	5793240-5793573	26,19,19	CRISPRCasFinder,PILER-CR,CRT	no		WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Orphan	GTCTTCCCCGCGTACGCGGGGGTGTTCC,TCTTCCCCGCGTACGCGGGGGTGTTCCC,TCTTCCCCGCGTACGCGGGGGTGTTCC	28,28,27	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	5,4,5	5	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA,NA|84aa|down_3|NZ_CP016076.1_5796328_5796580_-	NA|341aa|up_9|NZ_CP016076.1_5779599_5780622_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|409aa|up_8|NZ_CP016076.1_5780928_5782155_-	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|562aa|up_7|NZ_CP016076.1_5782935_5784621_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP016076.1_5784952_5785684_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|322aa|up_5|NZ_CP016076.1_5785692_5786658_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|460aa|up_4|NZ_CP016076.1_5786657_5788037_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|366aa|up_3|NZ_CP016076.1_5788147_5789245_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|305aa|up_2|NZ_CP016076.1_5790242_5791157_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|249aa|up_1|NZ_CP016076.1_5791285_5792032_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|268aa|up_0|NZ_CP016076.1_5792254_5793058_+	PRK07827, PRK07827, enoyl-CoA hydratase family protein	NA|305aa|down_0|NZ_CP016076.1_5793752_5794667_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|258aa|down_1|NZ_CP016076.1_5794937_5795711_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|117aa|down_2|NZ_CP016076.1_5795904_5796255_-	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|84aa|down_3|NZ_CP016076.1_5796328_5796580_-	NA	NA|322aa|down_4|NZ_CP016076.1_5796610_5797576_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|176aa|down_5|NZ_CP016076.1_5797572_5798100_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|215aa|down_6|NZ_CP016076.1_5798178_5798823_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|342aa|down_7|NZ_CP016076.1_5799012_5800038_-	pfam03060, NMO, Nitronate monooxygenase	NA|252aa|down_8|NZ_CP016076.1_5800148_5800904_+	pfam14325, DUF4383, Domain of unknown function (DUF4383)	NA|65aa|down_9|NZ_CP016076.1_5801528_5801723_+	pfam11248, DUF3046, Protein of unknown function (DUF3046)
GCF_001941625.1_ASM194162v1	NZ_CP016076	Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome	26	6566383-6566543	27	CRISPRCasFinder	no	WYL	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	Unclear	GGTCCTCATCGTCCCTATGAGGGGTTCCAAC	31	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,DinG,casR,DEDDh,cas4,cas5,cas8c,cas7,cas1,cas2,cas6,cas6e,cse2gr11,cas8e,Cas9_archaeal	NA|75aa|up_8|NZ_CP016076.1_6556134_6556359_+,NA|214aa|up_4|NZ_CP016076.1_6561030_6561672_-,NA|140aa|up_3|NZ_CP016076.1_6561648_6562068_+,NA	NA|486aa|up_9|NZ_CP016076.1_6554684_6556142_+	pfam04024, PspC, PspC domain	NA|75aa|up_8|NZ_CP016076.1_6556134_6556359_+	NA	NA|374aa|up_7|NZ_CP016076.1_6556387_6557509_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|525aa|up_6|NZ_CP016076.1_6557632_6559207_-	PRK00074, guaA, GMP synthase; Reviewed	NA|486aa|up_5|NZ_CP016076.1_6559373_6560831_+	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like	NA|214aa|up_4|NZ_CP016076.1_6561030_6561672_-	NA	NA|140aa|up_3|NZ_CP016076.1_6561648_6562068_+	NA	WYL|335aa|up_2|NZ_CP016076.1_6564098_6565103_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|156aa|up_1|NZ_CP016076.1_6565217_6565685_+	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|188aa|up_0|NZ_CP016076.1_6565778_6566342_+	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown]	NA|377aa|down_0|NZ_CP016076.1_6566873_6568004_-	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein	NA|503aa|down_1|NZ_CP016076.1_6568300_6569809_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|144aa|down_2|NZ_CP016076.1_6569995_6570427_+	pfam17252, DUF5319, Family of unknown function (DUF5319)	NA|331aa|down_3|NZ_CP016076.1_6570545_6571538_-	pfam16751, RsdA_SigD_bd, Anti-sigma-D factor RsdA to sigma factor binding region	NA|191aa|down_4|NZ_CP016076.1_6571539_6572112_-	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|199aa|down_5|NZ_CP016076.1_6572465_6573062_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|101aa|down_6|NZ_CP016076.1_6574783_6575086_+	pfam02467, Whib, Transcription factor WhiB	NA|539aa|down_7|NZ_CP016076.1_6575192_6576809_-	PRK12849, groEL, chaperonin GroEL; Reviewed	NA|99aa|down_8|NZ_CP016076.1_6577047_6577344_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|388aa|down_9|NZ_CP016076.1_6577844_6579008_-	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system
