assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001941405.1_ASM194140v1	NZ_CP008925	Salmonella enterica subsp. enterica serovar Cerro strain 87 chromosome, complete genome	1	1900954-1902507	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	25,25,24	25	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP008925.1_1892820_1893582_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP008925.1_1893562_1894612_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP008925.1_1894608_1895088_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP008925.1_1895087_1895798_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP008925.1_1895816_1896128_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP008925.1_1896318_1896642_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP008925.1_1896692_1897298_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP008925.1_1897284_1898724_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP008925.1_1898733_1899642_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP008925.1_1899892_1900939_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP008925.1_1902591_1902885_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP008925.1_1902887_1903805_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_CP008925.1_1903804_1904509_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_CP008925.1_1904508_1905234_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP008925.1_1905243_1906302_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_CP008925.1_1906324_1906927_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_CP008925.1_1906943_1908479_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP008925.1_1908836_1911536_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_8|NZ_CP008925.1_1911916_1912870_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP008925.1_1913082_1913817_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001941405.1_ASM194140v1	NZ_CP008925	Salmonella enterica subsp. enterica serovar Cerro strain 87 chromosome, complete genome	2	1919213-1920522	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,20	21	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP008925.1_1905243_1906302_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|up_8|NZ_CP008925.1_1906324_1906927_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|up_7|NZ_CP008925.1_1906943_1908479_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP008925.1_1908836_1911536_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_5|NZ_CP008925.1_1911916_1912870_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP008925.1_1913082_1913817_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP008925.1_1913918_1915631_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP008925.1_1915630_1917430_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP008925.1_1917865_1918228_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP008925.1_1918317_1919115_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP008925.1_1920818_1921490_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP008925.1_1921625_1922924_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP008925.1_1923006_1924644_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP008925.1_1924871_1925672_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP008925.1_1926280_1926868_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP008925.1_1926948_1929648_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP008925.1_1929660_1930434_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP008925.1_1930453_1930960_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP008925.1_1930974_1931445_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP008925.1_1931441_1931978_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_001941405.1_ASM194140v1	NZ_CP008925	Salmonella enterica subsp. enterica serovar Cerro strain 87 chromosome, complete genome	3	4182043-4182132	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|96aa|up_8|NZ_CP008925.1_4177230_4177518_-,NA|101aa|up_6|NZ_CP008925.1_4178133_4178436_-,NA|173aa|up_4|NZ_CP008925.1_4179346_4179865_-,NA|134aa|down_5|NZ_CP008925.1_4185674_4186076_+	NA|51aa|up_9|NZ_CP008925.1_4176754_4176907_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|96aa|up_8|NZ_CP008925.1_4177230_4177518_-	NA	NA|167aa|up_7|NZ_CP008925.1_4177551_4178052_-	pfam13392, HNH_3, HNH endonuclease	NA|101aa|up_6|NZ_CP008925.1_4178133_4178436_-	NA	NA|70aa|up_5|NZ_CP008925.1_4178795_4179005_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|173aa|up_4|NZ_CP008925.1_4179346_4179865_-	NA	NA|230aa|up_3|NZ_CP008925.1_4180066_4180756_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|up_2|NZ_CP008925.1_4180866_4181082_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|94aa|up_1|NZ_CP008925.1_4181192_4181474_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP008925.1_4181508_4181655_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP008925.1_4182536_4183973_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|147aa|down_1|NZ_CP008925.1_4184049_4184490_+	pfam05772, NinB, NinB protein	NA|291aa|down_2|NZ_CP008925.1_4184486_4185359_+	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|58aa|down_3|NZ_CP008925.1_4185355_4185529_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_4|NZ_CP008925.1_4185495_4185672_+	pfam05322, NinE, NINE Protein	NA|134aa|down_5|NZ_CP008925.1_4185674_4186076_+	NA	NA|204aa|down_6|NZ_CP008925.1_4186238_4186850_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|68aa|down_7|NZ_CP008925.1_4186846_4187050_+	pfam06322, Phage_NinH, Phage NinH protein	NA|258aa|down_8|NZ_CP008925.1_4187207_4187981_+	pfam03589, Antiterm, Antitermination protein	NA|109aa|down_9|NZ_CP008925.1_4188407_4188734_+	TIGR01594, Uncharacterized_protein_HI_1416, phage holin, lambda family
