assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001936395.1_ASM193639v1	NZ_CP018912	Flavobacterium columnare strain TC 1691 chromosome, complete genome	1	1254580-1254672	1	CRISPRCasFinder	no		DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	Orphan	GCATATCACTTTGTGTCATATCCGCGACATCTGG	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	NA|50aa|up_8|NZ_CP018912.1_1246741_1246891_+,NA|173aa|up_6|NZ_CP018912.1_1247552_1248071_-,NA|528aa|up_2|NZ_CP018912.1_1251946_1253530_-,NA|50aa|up_0|NZ_CP018912.1_1254326_1254476_+,NA|50aa|down_0|NZ_CP018912.1_1254841_1254991_+,NA|108aa|down_1|NZ_CP018912.1_1255300_1255624_-,NA|235aa|down_3|NZ_CP018912.1_1267313_1268018_-,NA|1901aa|down_5|NZ_CP018912.1_1273060_1278763_-,NA|200aa|down_6|NZ_CP018912.1_1278759_1279359_-,NA|353aa|down_9|NZ_CP018912.1_1280749_1281808_+	NA|111aa|up_9|NZ_CP018912.1_1246083_1246416_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|50aa|up_8|NZ_CP018912.1_1246741_1246891_+	NA	NA|119aa|up_7|NZ_CP018912.1_1247086_1247443_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|173aa|up_6|NZ_CP018912.1_1247552_1248071_-	NA	NA|357aa|up_5|NZ_CP018912.1_1248081_1249152_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|290aa|up_4|NZ_CP018912.1_1250082_1250952_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|345aa|up_3|NZ_CP018912.1_1250851_1251886_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|528aa|up_2|NZ_CP018912.1_1251946_1253530_-	NA	NA|111aa|up_1|NZ_CP018912.1_1253668_1254001_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|50aa|up_0|NZ_CP018912.1_1254326_1254476_+	NA	NA|50aa|down_0|NZ_CP018912.1_1254841_1254991_+	NA	NA|108aa|down_1|NZ_CP018912.1_1255300_1255624_-	NA	NA|3883aa|down_2|NZ_CP018912.1_1255627_1267276_-	sd00002, TSP3, Calcium-binding Thrombospondin type 3 (TSP3) repeat	NA|235aa|down_3|NZ_CP018912.1_1267313_1268018_-	NA	NA|1650aa|down_4|NZ_CP018912.1_1268017_1272967_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1901aa|down_5|NZ_CP018912.1_1273060_1278763_-	NA	NA|200aa|down_6|NZ_CP018912.1_1278759_1279359_-	NA	NA|169aa|down_7|NZ_CP018912.1_1279345_1279852_-	smart00935, OmpH, Outer membrane protein (OmpH-like)	NA|206aa|down_8|NZ_CP018912.1_1279995_1280613_+	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown]	NA|353aa|down_9|NZ_CP018912.1_1280749_1281808_+	NA
GCF_001936395.1_ASM193639v1	NZ_CP018912	Flavobacterium columnare strain TC 1691 chromosome, complete genome	2	1587230-1587329	2	CRISPRCasFinder	no	cas9	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	Type II-C, or Type II-C?,Type II-B, Type II-B,Type II-A	AAAAATTGAAAGCAATTCACAAC	23	0	0	NA	NA	NA	1	1	TypeII-C,orTypeII-C?,TypeII-B,TypeII-B,TypeII-A	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	NA|161aa|up_2|NZ_CP018912.1_1580199_1580682_+,NA|257aa|down_1|NZ_CP018912.1_1588203_1588974_+	NA|375aa|up_9|NZ_CP018912.1_1574127_1575252_+	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional	NA|316aa|up_8|NZ_CP018912.1_1575285_1576233_+	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed	NA|258aa|up_7|NZ_CP018912.1_1576236_1577010_+	cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like 	NA|365aa|up_6|NZ_CP018912.1_1577013_1578108_+	cd05651, M20_ArgE_DapE-like, M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|437aa|up_5|NZ_CP018912.1_1578079_1579390_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|154aa|up_4|NZ_CP018912.1_1579386_1579848_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|60aa|up_3|NZ_CP018912.1_1579871_1580051_-	PRK00575, tatA, Sec-independent protein translocase subunit TatA	NA|161aa|up_2|NZ_CP018912.1_1580199_1580682_+	NA	NA|494aa|up_1|NZ_CP018912.1_1580681_1582163_+	pfam03321, GH3, GH3 auxin-responsive promoter	cas9|1460aa|up_0|NZ_CP018912.1_1582333_1586713_+	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|132aa|down_0|NZ_CP018912.1_1587789_1588185_+	pfam14107, DUF4280, Domain of unknown function (DUF4280)	NA|257aa|down_1|NZ_CP018912.1_1588203_1588974_+	NA	NA|131aa|down_2|NZ_CP018912.1_1589081_1589474_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|277aa|down_3|NZ_CP018912.1_1589470_1590301_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|427aa|down_4|NZ_CP018912.1_1590293_1591574_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|363aa|down_5|NZ_CP018912.1_1591643_1592732_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|367aa|down_6|NZ_CP018912.1_1593296_1594397_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|319aa|down_7|NZ_CP018912.1_1594605_1595562_+	pfam18175, HU-CCDC81_bac_2, CCDC81-like prokaryotic HU domain 2	NA|171aa|down_8|NZ_CP018912.1_1595644_1596157_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|648aa|down_9|NZ_CP018912.1_1596367_1598311_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
GCF_001936395.1_ASM193639v1	NZ_CP018912	Flavobacterium columnare strain TC 1691 chromosome, complete genome	3	2342108-2343985	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	Unclear	GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT,GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT,GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT	36,36,36	0	0	NA	NA	NA:NA:NA	28,28,27	28	Unclear	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	NA|53aa|up_8|NZ_CP018912.1_2333571_2333730_+,NA|86aa|up_7|NZ_CP018912.1_2333704_2333962_+,NA|72aa|up_5|NZ_CP018912.1_2334259_2334475_+,NA|97aa|up_3|NZ_CP018912.1_2335051_2335342_+,NA|81aa|up_2|NZ_CP018912.1_2340471_2340714_+,NA|136aa|down_2|NZ_CP018912.1_2345398_2345806_+	NA|223aa|up_9|NZ_CP018912.1_2332657_2333326_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|53aa|up_8|NZ_CP018912.1_2333571_2333730_+	NA	NA|86aa|up_7|NZ_CP018912.1_2333704_2333962_+	NA	NA|97aa|up_6|NZ_CP018912.1_2333963_2334254_+	PRK14369, PRK14369, membrane protein insertion efficiency factor YidD	NA|72aa|up_5|NZ_CP018912.1_2334259_2334475_+	NA	NA|169aa|up_4|NZ_CP018912.1_2334540_2335047_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|97aa|up_3|NZ_CP018912.1_2335051_2335342_+	NA	NA|81aa|up_2|NZ_CP018912.1_2340471_2340714_+	NA	NA|277aa|up_1|NZ_CP018912.1_2340796_2341627_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|95aa|up_0|NZ_CP018912.1_2341635_2341920_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	cas2|110aa|down_0|NZ_CP018912.1_2344091_2344421_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|295aa|down_1|NZ_CP018912.1_2344411_2345296_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|136aa|down_2|NZ_CP018912.1_2345398_2345806_+	NA	NA|327aa|down_3|NZ_CP018912.1_2346218_2347199_+	pfam04443, LuxE, Acyl-protein synthetase, LuxE	NA|221aa|down_4|NZ_CP018912.1_2347284_2347947_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|361aa|down_5|NZ_CP018912.1_2348092_2349175_-	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|138aa|down_6|NZ_CP018912.1_2349184_2349598_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|723aa|down_7|NZ_CP018912.1_2349615_2351784_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|down_8|NZ_CP018912.1_2351880_2352339_-	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA|415aa|down_9|NZ_CP018912.1_2352501_2353746_+	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases
GCF_001936395.1_ASM193639v1	NZ_CP018912	Flavobacterium columnare strain TC 1691 chromosome, complete genome	4	2900948-2901902	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas13b	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	Type VI-B1,,Type VI-B2	GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC,GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC,GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC	36,36,36	0	0	NA	NA	VI-B1:VI-B1:VI-B1	13,14,14	14	,TypeVI-B1,TypeVI-B2	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	NA|307aa|up_7|NZ_CP018912.1_2889584_2890505_+,NA|239aa|down_2|NZ_CP018912.1_2904506_2905223_+,NA|165aa|down_4|NZ_CP018912.1_2906829_2907324_+,NA|235aa|down_5|NZ_CP018912.1_2907295_2908000_+,NA|227aa|down_9|NZ_CP018912.1_2911257_2911938_-	NA|296aa|up_9|NZ_CP018912.1_2886873_2887761_-	COG2962, RarD, Predicted permeases [General function prediction only]	NA|552aa|up_8|NZ_CP018912.1_2887844_2889500_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|307aa|up_7|NZ_CP018912.1_2889584_2890505_+	NA	NA|182aa|up_6|NZ_CP018912.1_2890506_2891052_-	pfam01713, Smr, Smr domain	NA|92aa|up_5|NZ_CP018912.1_2891134_2891410_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|415aa|up_4|NZ_CP018912.1_2891557_2892802_-	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase	NA|479aa|up_3|NZ_CP018912.1_2893078_2894515_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|601aa|up_2|NZ_CP018912.1_2894648_2896451_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|179aa|up_1|NZ_CP018912.1_2896483_2897020_-	pfam08002, DUF1697, Protein of unknown function (DUF1697)	cas13b|1215aa|up_0|NZ_CP018912.1_2897166_2900811_+	cd20478, Cas13b_Bz-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Bergeyella zoohelcum and similar Cas13b proteins	NA|279aa|down_0|NZ_CP018912.1_2902410_2903247_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|283aa|down_1|NZ_CP018912.1_2903301_2904150_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|239aa|down_2|NZ_CP018912.1_2904506_2905223_+	NA	NA|471aa|down_3|NZ_CP018912.1_2905356_2906769_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|165aa|down_4|NZ_CP018912.1_2906829_2907324_+	NA	NA|235aa|down_5|NZ_CP018912.1_2907295_2908000_+	NA	NA|278aa|down_6|NZ_CP018912.1_2908220_2909054_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|114aa|down_7|NZ_CP018912.1_2909134_2909476_-	pfam11015, DUF2853, Protein of unknown function (DUF2853)	NA|555aa|down_8|NZ_CP018912.1_2909559_2911224_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|227aa|down_9|NZ_CP018912.1_2911257_2911938_-	NA
GCF_001936395.1_ASM193639v1	NZ_CP018912	Flavobacterium columnare strain TC 1691 chromosome, complete genome	5	2921252-2921433	3	PILER-CR	no		DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	Orphan	AAAAGCAAAAAAACCAATAGAGGTAACGGAATTAGGAATGGTAACAGCGGTTAAACCT	58	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,cas9,cas3,WYL,cas2,cas1,csa3,cas13b,PD-DExK	NA|227aa|up_8|NZ_CP018912.1_2911257_2911938_-,NA|83aa|up_0|NZ_CP018912.1_2918983_2919232_-,NA|141aa|down_9|NZ_CP018912.1_2937352_2937775_-	NA|555aa|up_9|NZ_CP018912.1_2909559_2911224_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|227aa|up_8|NZ_CP018912.1_2911257_2911938_-	NA	NA|165aa|up_7|NZ_CP018912.1_2911977_2912472_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|279aa|up_6|NZ_CP018912.1_2912754_2913591_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|92aa|up_5|NZ_CP018912.1_2913622_2913898_+	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS	NA|422aa|up_4|NZ_CP018912.1_2914013_2915279_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|220aa|up_3|NZ_CP018912.1_2915288_2915948_+	pfam07947, YhhN, YhhN family	NA|140aa|up_2|NZ_CP018912.1_2916585_2917005_-	PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional	NA|529aa|up_1|NZ_CP018912.1_2917091_2918678_-	pfam10079, BshC, Bacillithiol biosynthesis BshC	NA|83aa|up_0|NZ_CP018912.1_2918983_2919232_-	NA	NA|731aa|down_0|NZ_CP018912.1_2922298_2924491_+	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM	NA|600aa|down_1|NZ_CP018912.1_2924899_2926699_-	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA	NA|84aa|down_2|NZ_CP018912.1_2926916_2927168_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|493aa|down_3|NZ_CP018912.1_2927723_2929202_-	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional	NA|366aa|down_4|NZ_CP018912.1_2929300_2930398_+	cd16147, G6S, glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND sulfatase 1(SULF1)	NA|511aa|down_5|NZ_CP018912.1_2930462_2931995_+	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|434aa|down_6|NZ_CP018912.1_2932136_2933438_+	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|559aa|down_7|NZ_CP018912.1_2935306_2936983_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|99aa|down_8|NZ_CP018912.1_2937075_2937372_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|141aa|down_9|NZ_CP018912.1_2937352_2937775_-	NA
