The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018888	Lactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome	1610352	725471	743779	1610352	integrase,holin,transposase	Streptococcus_phage(42.86%)	26	716402:716416	744653:744667
716402:716416	attL	CCTTTTTCATTAATC	NA	NA	NA	NA
WP_141322579.1|725471_726380_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.0	2.5e-40
WP_083605803.1|726402_726855_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_056946946.1|726874_727024_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_017866965.1|727410_727551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003680323.1|727562_727814_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_003680323.1|727828_728080_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_003680323.1|728094_728346_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_003680323.1|728360_728612_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_056946817.1|728626_729169_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_003596522.1|729196_729382_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_056946814.1|729393_729954_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_012477193.1|730171_730543_+	DUF3021 family protein	NA	NA	NA	NA	NA
WP_056946811.1|730606_731224_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	35.5	6.5e-16
WP_075362795.1|731482_732061_-|integrase	tyrosine-type recombinase/integrase	integrase	U5Q0B8	Bacillus_phage	29.6	2.9e-10
WP_002325565.1|733548_734229_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_056945824.1|734266_734461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002328822.1|734584_734740_-	protein RepA	NA	NA	NA	NA	NA
WP_001038790.1|735719_736457_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_013641314.1|736581_736665_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_074412848.1|737401_738613_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_075362796.1|738865_739384_-	replication protein repB	NA	NA	NA	NA	NA
WP_002325565.1|739408_740089_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_054746482.1|740681_740948_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_054746483.1|741153_741402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054746484.1|741613_742510_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_056946950.1|742603_743779_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.3	2.0e-26
744653:744667	attR	CCTTTTTCATTAATC	NA	NA	NA	NA
>prophage 2
NZ_CP018888	Lactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome	1610352	1025763	1036095	1610352		Enterococcus_phage(37.5%)	11	NA	NA
WP_056947127.1|1025763_1027575_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HMK6	Paramecium_bursaria_Chlorella_virus	36.2	4.6e-94
WP_054745630.1|1027629_1028088_-	OsmC family protein	NA	NA	NA	NA	NA
WP_056947124.1|1028227_1029196_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.3	1.8e-121
WP_056947120.1|1029257_1031423_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	59.2	3.1e-246
WP_056947118.1|1031403_1031784_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	Q4Z9B0	Staphylococcus_phage	31.6	5.8e-07
WP_054745628.1|1031783_1032014_-	glutaredoxin-like protein NrdH	NA	A0A249XVP4	Enterococcus_phage	55.4	1.0e-14
WP_056947115.1|1032329_1032962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056947111.1|1033023_1033233_-	DUF2187 family protein	NA	NA	NA	NA	NA
WP_054745624.1|1033313_1033871_+	AAA family ATPase	NA	A0A0K2FM14	Brevibacillus_phage	29.6	3.7e-10
WP_056947108.1|1034016_1035168_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	44.1	6.8e-19
WP_141322592.1|1035363_1036095_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	40.2	4.6e-37
>prophage 3
NZ_CP018888	Lactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome	1610352	1048135	1106974	1610352	integrase,protease,transposase	Streptococcus_phage(55.17%)	63	1068625:1068684	1090844:1092172
WP_056947099.1|1048135_1049437_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	56.6	6.7e-55
WP_056947096.1|1049499_1050069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054745602.1|1050148_1050622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056947093.1|1050605_1051526_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	31.8	4.5e-29
WP_056947090.1|1051613_1053179_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.5	1.3e-23
WP_000237797.1|1053246_1054440_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	35.6	2.2e-44
WP_000633907.1|1054466_1054667_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_071875954.1|1054747_1054951_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000845143.1|1055164_1055395_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000804879.1|1055391_1055814_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|1056344_1056698_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|1056755_1056944_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_002299749.1|1057019_1058210_-|transposase	IS256-like element ISLgar5 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.4	7.3e-24
WP_000691737.1|1058385_1060305_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|1060320_1060437_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|1060681_1061611_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768374.1|1061627_1062650_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	1.4e-132
WP_000192390.1|1062646_1064674_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.7	1.8e-195
WP_000941001.1|1064670_1067124_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	79.1	0.0e+00
WP_000723886.1|1067107_1067503_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	75.0	1.7e-49
WP_000234705.1|1067573_1068599_-	hypothetical protein	NA	NA	NA	NA	NA
1068625:1068684	attL	AAGTCAAGTCCATAAAATTGTGTAAAATACAGTACACTGTTTTAAAGCTTTAACCTATAG	NA	NA	NA	NA
WP_000195404.1|1068685_1069852_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	76.0	1.2e-106
WP_000421245.1|1070014_1070515_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.1	5.4e-53
WP_000678782.1|1070575_1071355_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|1071396_1071618_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055367.1|1071614_1071887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426691.1|1071883_1073068_-	replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	67.6	1.0e-158
WP_082611526.1|1073249_1074653_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	67.2	6.7e-178
WP_000185760.1|1074674_1075448_-	hypothetical protein	NA	A0A0C4UQZ7	Shigella_phage	25.5	1.4e-07
WP_001234189.1|1075457_1075835_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	77.2	5.6e-47
WP_000421280.1|1075855_1076170_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	76.7	7.0e-43
WP_054746443.1|1076696_1077155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056945777.1|1077231_1077768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056945776.1|1078242_1079082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056945775.1|1079204_1079498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945774.1|1079591_1079975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075362811.1|1079964_1081308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945773.1|1081310_1082528_+	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_054746436.1|1082593_1082791_+	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_056945779.1|1082797_1084096_+|integrase	site-specific integrase	integrase	A0A1B2AQ00	Phage_Wrath	26.9	7.2e-25
WP_054746435.1|1084327_1084825_+	super-infection exclusion protein B	NA	NA	NA	NA	NA
WP_082611527.1|1085088_1089576_+	DEAD/DEAH box helicase	NA	A0A2H4UTW8	Bodo_saltans_virus	27.7	2.9e-49
WP_000195404.1|1089675_1090842_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	76.0	1.2e-106
WP_056945780.1|1091130_1091313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945781.1|1091352_1091868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156408156.1|1091920_1092067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945782.1|1092305_1093835_-	hypothetical protein	NA	NA	NA	NA	NA
1090844:1092172	attR	CTATAGGTTAAAGCTTTAAAACAGTGTACTGTATTTTACACAATTTTATGGACTTGACTTAAAAAATCTGGAATTACTGATGATCCAAACGATTTTAGTGATGATCCAAAGTATATTTTGAATTTGTTACTGTCTGTAATAACGGTAAGTATGAAAACATTGGAGTTGATTGATGAACTACCGGATTTCGAACCAATTGATATTTAAAGAATCTTTCAGTATTTTACATCGAAAAATATTAGTGACTAGTTATGACGACCTAGTTTTATGAATTAGGAGCCACCGGTATGAAAAAAGGAAAATTAATCAAATACATTGTTGTGATAGGTAATGGTTTGGATTTACACCATGGATTATCATCAAGATATGTAGATTTTTATAATTCTTCGTCAATGTCCAGCAGATTGAAAGAGGAGTATGACATTGTCACTGCGCAATTTAGAAAACCAGGAACCTGGTACGACTTTTAAAATTAGTATCGACAGCTGATTTATCAAGAAACAACGAAAATGAATTCAGGTGCATATGGGACAGGAGATTTAGGTCTTTCTGAGAAAAATGGAATTATATTGGAGAAGCACGTCCAACGTTTAAATTATCTGTTTCAGATAATTGATAAAAAATTTGAAGATTATCTGTCTGTTGAGTACGACAAACAGGCTGCTAAATTTAAAATAGATTCTAATGTCAAAAATGTGTTAGATACCGCTGATATAGTACTTAATTTCAATTACACAAACACGCTTCAAGATGTTTATGGAATCGAAAGTTCTAAAGAAATACATGTTCATGGCGATTTCACAGCAAGTATGATTTTAGGACACTCAAATTATTACGATGGGGAGGGTGCGAAAAACTTTGGAGTTCACTTCACCGACTTGTATGAAGACGTGTCTATAAAAATTTCAGTAAATGAATTGAACGAAGAAGGAATTTATAGATTTTATCAAAAGTATACATTTTATGATTTTGATAGAGCCGCTGACGTATATATAAAAATGTTAAAACGAAAACTAATAGATTGAAATTTGATCAAGCTGTCTGTATACTTGTCAAGAAAGAAAGGCGGTAAGAGTAATGGATATAAAAATTGAAAAATCAAATAAATTTGGTTCATCTATAAAAACCACAAAAAATATTGGCGTATCTATTTCTGAAGCCAAAACTGCCGTAATGAATGATGAGAGTATTTTAAAAGCGCTCAAAAAATTATCTACTAAGTAATAACTACAAATAGGCCTCACCTAATGGTGAAGCTTATTTTTATACTCAAAATTGATTTTGTGTCAATTTAAAACCTGCGTATTAAGTTGAAGTAAACCCCAATAA	NA	NA	NA	NA
WP_054746238.1|1094113_1094638_-	flavodoxin	NA	NA	NA	NA	NA
WP_056945783.1|1095013_1096204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945784.1|1096358_1097981_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.6	5.6e-43
WP_056945785.1|1098044_1098572_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_056945786.1|1098651_1099398_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_056945787.1|1099480_1099906_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_054746207.1|1099920_1100544_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_156408157.1|1100543_1100924_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	29.9	3.2e-05
WP_056945789.1|1100927_1101296_+	CrcB family protein	NA	NA	NA	NA	NA
WP_056945790.1|1101442_1102528_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_056945791.1|1102531_1103230_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.2e-29
WP_056945792.1|1103234_1103834_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_054746212.1|1103928_1104111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054746213.1|1104151_1104682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945793.1|1104788_1106177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056945794.1|1106293_1106974_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
>prophage 4
NZ_CP018888	Lactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome	1610352	1286104	1295072	1610352		Streptococcus_phage(33.33%)	9	NA	NA
WP_056945977.1|1286104_1288975_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.3	1.7e-305
WP_054745938.1|1289026_1289563_+	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_056945978.1|1289680_1290562_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.7	2.2e-09
WP_054745939.1|1290561_1291596_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	50.2	3.0e-90
WP_056945979.1|1291595_1292543_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	36.6	1.5e-48
WP_054745940.1|1292557_1293031_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_054745941.1|1293111_1293699_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	50.5	6.1e-48
WP_054745942.1|1293800_1294271_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_054745943.1|1294430_1295072_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.8	4.7e-17
>prophage 5
NZ_CP018888	Lactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome	1610352	1508920	1518865	1610352	tRNA	Staphylococcus_phage(37.5%)	12	NA	NA
WP_056946109.1|1508920_1509811_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	41.7	2.4e-56
WP_056946110.1|1509900_1511109_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	49.3	1.6e-42
WP_054745115.1|1511135_1511588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056946423.1|1511715_1512687_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	58.2	8.4e-111
WP_056946111.1|1512686_1513217_+	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	35.4	2.6e-21
WP_054745110.1|1513258_1513924_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_056946112.1|1514093_1514939_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.0	1.5e-15
WP_054745310.1|1514953_1515175_+	YozE family protein	NA	NA	NA	NA	NA
WP_056946114.1|1515210_1516647_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	25.6	3.0e-16
WP_056946115.1|1516668_1517091_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	52.3	8.9e-33
WP_054745104.1|1517208_1518057_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_082611550.1|1518049_1518865_+	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	37.0	4.2e-23
