assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001932775.1_ASM193277v1	NZ_CP013773	Piscirickettsia salmonis strain PM37984A, complete genome	1	409009-409115	1	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|154aa|up_7|NZ_CP013773.1_397826_398288_+,NA|53aa|up_5|NZ_CP013773.1_400708_400867_-,NA|62aa|up_4|NZ_CP013773.1_401223_401409_+,NA|105aa|up_2|NZ_CP013773.1_406105_406420_-,NA|87aa|up_1|NZ_CP013773.1_406677_406938_+,NA|86aa|down_0|NZ_CP013773.1_409819_410077_+,NA|204aa|down_4|NZ_CP013773.1_414074_414686_+,NA|87aa|down_5|NZ_CP013773.1_414870_415131_+,NA|67aa|down_7|NZ_CP013773.1_416680_416881_-	NA|602aa|up_9|NZ_CP013773.1_394570_396376_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_8|NZ_CP013773.1_396859_397657_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_7|NZ_CP013773.1_397826_398288_+	NA	NA|652aa|up_6|NZ_CP013773.1_398586_400542_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|53aa|up_5|NZ_CP013773.1_400708_400867_-	NA	NA|62aa|up_4|NZ_CP013773.1_401223_401409_+	NA	NA|330aa|up_3|NZ_CP013773.1_401742_402732_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP013773.1_406105_406420_-	NA	NA|87aa|up_1|NZ_CP013773.1_406677_406938_+	NA	NA|163aa|up_0|NZ_CP013773.1_406957_407446_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP013773.1_409819_410077_+	NA	NA|336aa|down_1|NZ_CP013773.1_410076_411084_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP013773.1_411108_412674_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP013773.1_412880_413708_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP013773.1_414074_414686_+	NA	NA|87aa|down_5|NZ_CP013773.1_414870_415131_+	NA	NA|318aa|down_6|NZ_CP013773.1_415304_416258_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP013773.1_416680_416881_-	NA	NA|269aa|down_8|NZ_CP013773.1_417255_418062_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP013773.1_418167_419139_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_001932775.1_ASM193277v1	NZ_CP013773	Piscirickettsia salmonis strain PM37984A, complete genome	2	1600708-1600828	2	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|158aa|up_8|NZ_CP013773.1_1592045_1592519_-,NA|172aa|up_4|NZ_CP013773.1_1597906_1598422_+,NA|88aa|up_3|NZ_CP013773.1_1598654_1598918_+,NA|137aa|up_2|NZ_CP013773.1_1599186_1599597_+,NA|141aa|up_1|NZ_CP013773.1_1599840_1600263_-,NA|47aa|up_0|NZ_CP013773.1_1600295_1600436_+,NA	NA|461aa|up_9|NZ_CP013773.1_1590654_1592037_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP013773.1_1592045_1592519_-	NA	NA|420aa|up_7|NZ_CP013773.1_1592651_1593911_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP013773.1_1594366_1596448_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP013773.1_1596751_1597762_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP013773.1_1597906_1598422_+	NA	NA|88aa|up_3|NZ_CP013773.1_1598654_1598918_+	NA	NA|137aa|up_2|NZ_CP013773.1_1599186_1599597_+	NA	NA|141aa|up_1|NZ_CP013773.1_1599840_1600263_-	NA	NA|47aa|up_0|NZ_CP013773.1_1600295_1600436_+	NA	NA|296aa|down_0|NZ_CP013773.1_1602205_1603092_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_1|NZ_CP013773.1_1603775_1604171_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP013773.1_1604167_1604962_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP013773.1_1605140_1605866_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP013773.1_1606111_1607299_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_5|NZ_CP013773.1_1607875_1608418_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_6|NZ_CP013773.1_1608414_1609101_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_7|NZ_CP013773.1_1609104_1609716_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_8|NZ_CP013773.1_1609762_1610782_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|265aa|down_9|NZ_CP013773.1_1610883_1611678_-	PRK01827, thyA, thymidylate synthase; Reviewed
GCF_001932775.1_ASM193277v1	NZ_CP013773	Piscirickettsia salmonis strain PM37984A, complete genome	3	2450844-2450973	3	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	38	2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927|2450890-2450927	NZ_CP013773.1_38708-38745|NZ_CP013773.1_109189-109226|NZ_CP013773.1_149998-150035|NZ_CP013773.1_499579-499616|NZ_CP013773.1_550198-550161|NZ_CP013773.1_581176-581139|NZ_CP013773.1_738171-738134|NZ_CP013773.1_762306-762269|NZ_CP013773.1_802903-802866|NZ_CP013773.1_968922-968959|NZ_CP013773.1_979926-979889|NZ_CP013773.1_1059069-1059106|NZ_CP013773.1_1085716-1085753|NZ_CP013773.1_1244310-1244347|NZ_CP013773.1_1332001-1331964|NZ_CP013773.1_1335309-1335272|NZ_CP013773.1_1338535-1338572|NZ_CP013773.1_1515606-1515569|NZ_CP013773.1_1768929-1768966|NZ_CP013773.1_1966772-1966809|NZ_CP013773.1_1976472-1976509|NZ_CP013773.1_1979909-1979872|NZ_CP013773.1_2149015-2149052|NZ_CP013773.1_2278920-2278957|NZ_CP013773.1_2283592-2283629|NZ_CP013773.1_2325802-2325839|NZ_CP013773.1_2356707-2356670|NZ_CP013773.1_2387094-2387131|NZ_CP013773.1_2549218-2549255|NZ_CP013773.1_2642036-2642073|NZ_CP013773.1_2759942-2759979|NZ_CP013773.1_2805404-2805367|NZ_CP013773.1_2862216-2862179|NZ_CP013773.1_2986260-2986297|NZ_CP013773.1_3002909-3002872|NZ_CP013773.1_1679159-1679122|NZ_CP013774.1_27738-27775|NZ_CP013774.1_38478-38441	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|485aa|up_9|NZ_CP013773.1_2440137_2441592_-,NA|73aa|up_8|NZ_CP013773.1_2442454_2442673_-,NA|65aa|up_5|NZ_CP013773.1_2445547_2445742_-,NA|105aa|up_1|NZ_CP013773.1_2449622_2449937_-,NA|97aa|down_0|NZ_CP013773.1_2451502_2451793_+,NA|233aa|down_1|NZ_CP013773.1_2451830_2452529_+,NA|99aa|down_2|NZ_CP013773.1_2452545_2452842_+,NA|282aa|down_3|NZ_CP013773.1_2452965_2453811_+,NA|128aa|down_4|NZ_CP013773.1_2454015_2454399_+,NA|192aa|down_5|NZ_CP013773.1_2454671_2455247_+	NA|485aa|up_9|NZ_CP013773.1_2440137_2441592_-	NA	NA|73aa|up_8|NZ_CP013773.1_2442454_2442673_-	NA	NA|85aa|up_7|NZ_CP013773.1_2443446_2443701_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP013773.1_2444423_2445410_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP013773.1_2445547_2445742_-	NA	NA|354aa|up_4|NZ_CP013773.1_2446424_2447486_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_3|NZ_CP013773.1_2447647_2449051_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_2|NZ_CP013773.1_2449101_2449677_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_1|NZ_CP013773.1_2449622_2449937_-	NA	NA|192aa|up_0|NZ_CP013773.1_2449977_2450553_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|97aa|down_0|NZ_CP013773.1_2451502_2451793_+	NA	NA|233aa|down_1|NZ_CP013773.1_2451830_2452529_+	NA	NA|99aa|down_2|NZ_CP013773.1_2452545_2452842_+	NA	NA|282aa|down_3|NZ_CP013773.1_2452965_2453811_+	NA	NA|128aa|down_4|NZ_CP013773.1_2454015_2454399_+	NA	NA|192aa|down_5|NZ_CP013773.1_2454671_2455247_+	NA	NA|278aa|down_6|NZ_CP013773.1_2455304_2456138_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP013773.1_2456253_2457438_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP013773.1_2457456_2458401_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP013773.1_2458705_2459491_+	TIGR03545, TIGR03545, TIGR03545 family protein
GCF_001932775.1_ASM193277v1	NZ_CP013774	Piscirickettsia salmonis strain PM37984A plasmid p1PS4, complete sequence	1	45269-45492	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|86aa|up_9|NZ_CP013774.1_37209_37467_-,NA|49aa|up_3|NZ_CP013774.1_40955_41102_+,NA|111aa|down_4|NZ_CP013774.1_50719_51052_-,NA|278aa|down_7|NZ_CP013774.1_52554_53388_+,NA|354aa|down_8|NZ_CP013774.1_53463_54525_+,NA|65aa|down_9|NZ_CP013774.1_55402_55597_+	NA|86aa|up_9|NZ_CP013774.1_37209_37467_-	NA	NA|336aa|up_8|NZ_CP013774.1_37535_38543_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|up_7|NZ_CP013774.1_38503_38869_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_6|NZ_CP013774.1_38814_39390_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|85aa|up_5|NZ_CP013774.1_39393_39648_-	pfam01527, HTH_Tnp_1, Transposase	RT|376aa|up_4|NZ_CP013774.1_39607_40735_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP013774.1_40955_41102_+	NA	NA|272aa|up_2|NZ_CP013774.1_41431_42247_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP013774.1_42492_43083_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP013774.1_44037_45057_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP013774.1_45980_46709_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP013774.1_46911_49488_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|52aa|down_2|NZ_CP013774.1_49782_49938_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|243aa|down_3|NZ_CP013774.1_49961_50690_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|111aa|down_4|NZ_CP013774.1_50719_51052_-	NA	NA|114aa|down_5|NZ_CP013774.1_51122_51464_-	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_6|NZ_CP013774.1_51619_52348_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|278aa|down_7|NZ_CP013774.1_52554_53388_+	NA	NA|354aa|down_8|NZ_CP013774.1_53463_54525_+	NA	NA|65aa|down_9|NZ_CP013774.1_55402_55597_+	NA
