assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001932755.1_ASM193275v1	NZ_CP013768	Piscirickettsia salmonis strain PM23019A, complete genome	1	412002-412108	1	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|154aa|up_6|NZ_CP013768.1_400820_401282_+,NA|62aa|up_4|NZ_CP013768.1_404216_404402_+,NA|105aa|up_2|NZ_CP013768.1_409098_409413_-,NA|87aa|up_1|NZ_CP013768.1_409670_409931_+,NA|86aa|down_0|NZ_CP013768.1_412812_413070_+,NA|204aa|down_4|NZ_CP013768.1_417066_417678_+,NA|87aa|down_5|NZ_CP013768.1_417862_418123_+	NA|421aa|up_9|NZ_CP013768.1_396214_397477_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP013768.1_397564_399370_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP013768.1_399853_400651_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP013768.1_400820_401282_+	NA	NA|652aa|up_5|NZ_CP013768.1_401580_403536_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP013768.1_404216_404402_+	NA	NA|330aa|up_3|NZ_CP013768.1_404735_405725_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP013768.1_409098_409413_-	NA	NA|87aa|up_1|NZ_CP013768.1_409670_409931_+	NA	NA|163aa|up_0|NZ_CP013768.1_409950_410439_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP013768.1_412812_413070_+	NA	NA|336aa|down_1|NZ_CP013768.1_413069_414077_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP013768.1_414101_415667_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP013768.1_415872_416700_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP013768.1_417066_417678_+	NA	NA|87aa|down_5|NZ_CP013768.1_417862_418123_+	NA	NA|318aa|down_6|NZ_CP013768.1_418296_419250_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|269aa|down_7|NZ_CP013768.1_420246_421053_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP013768.1_421158_422130_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP013768.1_422111_423083_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_001932755.1_ASM193275v1	NZ_CP013768	Piscirickettsia salmonis strain PM23019A, complete genome	2	1603607-1603727	2	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|158aa|up_8|NZ_CP013768.1_1594946_1595420_-,NA|172aa|up_4|NZ_CP013768.1_1600805_1601321_+,NA|88aa|up_3|NZ_CP013768.1_1601553_1601817_+,NA|137aa|up_2|NZ_CP013768.1_1602085_1602496_+,NA|141aa|up_1|NZ_CP013768.1_1602739_1603162_-,NA|47aa|up_0|NZ_CP013768.1_1603194_1603335_+,NA	NA|461aa|up_9|NZ_CP013768.1_1593555_1594938_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP013768.1_1594946_1595420_-	NA	NA|420aa|up_7|NZ_CP013768.1_1595552_1596812_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP013768.1_1597265_1599347_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP013768.1_1599650_1600661_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP013768.1_1600805_1601321_+	NA	NA|88aa|up_3|NZ_CP013768.1_1601553_1601817_+	NA	NA|137aa|up_2|NZ_CP013768.1_1602085_1602496_+	NA	NA|141aa|up_1|NZ_CP013768.1_1602739_1603162_-	NA	NA|47aa|up_0|NZ_CP013768.1_1603194_1603335_+	NA	NA|296aa|down_0|NZ_CP013768.1_1605104_1605991_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_1|NZ_CP013768.1_1606673_1607069_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP013768.1_1607065_1607860_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP013768.1_1608038_1608764_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP013768.1_1609009_1610197_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_5|NZ_CP013768.1_1610773_1611316_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_6|NZ_CP013768.1_1611312_1611999_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_7|NZ_CP013768.1_1612002_1612614_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_8|NZ_CP013768.1_1612660_1613680_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|265aa|down_9|NZ_CP013768.1_1613781_1614576_-	PRK01827, thyA, thymidylate synthase; Reviewed
GCF_001932755.1_ASM193275v1	NZ_CP013768	Piscirickettsia salmonis strain PM23019A, complete genome	3	2453654-2453783	3	CRISPRCasFinder	no		RT,DinG,DEDDh,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	38	2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737|2453700-2453737	NZ_CP013768.1_41720-41757|NZ_CP013768.1_112196-112233|NZ_CP013768.1_153001-153038|NZ_CP013768.1_502565-502602|NZ_CP013768.1_553179-553142|NZ_CP013768.1_584155-584118|NZ_CP013768.1_741136-741099|NZ_CP013768.1_765271-765234|NZ_CP013768.1_805867-805830|NZ_CP013768.1_971865-971902|NZ_CP013768.1_982869-982832|NZ_CP013768.1_1062007-1062044|NZ_CP013768.1_1088651-1088688|NZ_CP013768.1_1247234-1247271|NZ_CP013768.1_1334920-1334883|NZ_CP013768.1_1338228-1338191|NZ_CP013768.1_1341454-1341491|NZ_CP013768.1_1518512-1518475|NZ_CP013768.1_1771820-1771857|NZ_CP013768.1_1969655-1969692|NZ_CP013768.1_1979353-1979390|NZ_CP013768.1_1982790-1982753|NZ_CP013768.1_2151886-2151923|NZ_CP013768.1_2281786-2281823|NZ_CP013768.1_2286458-2286495|NZ_CP013768.1_2328665-2328702|NZ_CP013768.1_2359569-2359532|NZ_CP013768.1_2389907-2389944|NZ_CP013768.1_2552023-2552060|NZ_CP013768.1_2644834-2644871|NZ_CP013768.1_2762733-2762770|NZ_CP013768.1_2808193-2808156|NZ_CP013768.1_2865000-2864963|NZ_CP013768.1_2989039-2989076|NZ_CP013768.1_3005686-3005649|NZ_CP013768.1_1682055-1682018|NZ_CP013769.1_89408-89445|NZ_CP013769.1_100147-100110	NA	1	1	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|485aa|up_9|NZ_CP013768.1_2442947_2444402_-,NA|73aa|up_8|NZ_CP013768.1_2445264_2445483_-,NA|65aa|up_5|NZ_CP013768.1_2448357_2448552_-,NA|105aa|up_1|NZ_CP013768.1_2452432_2452747_-,NA|97aa|down_0|NZ_CP013768.1_2454312_2454603_+,NA|233aa|down_1|NZ_CP013768.1_2454640_2455339_+,NA|99aa|down_2|NZ_CP013768.1_2455355_2455652_+,NA|282aa|down_3|NZ_CP013768.1_2455775_2456621_+,NA|128aa|down_4|NZ_CP013768.1_2456825_2457209_+,NA|192aa|down_5|NZ_CP013768.1_2457481_2458057_+	NA|485aa|up_9|NZ_CP013768.1_2442947_2444402_-	NA	NA|73aa|up_8|NZ_CP013768.1_2445264_2445483_-	NA	NA|85aa|up_7|NZ_CP013768.1_2446256_2446511_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP013768.1_2447233_2448220_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP013768.1_2448357_2448552_-	NA	NA|354aa|up_4|NZ_CP013768.1_2449234_2450296_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_3|NZ_CP013768.1_2450457_2451861_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_2|NZ_CP013768.1_2451911_2452487_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_1|NZ_CP013768.1_2452432_2452747_-	NA	NA|192aa|up_0|NZ_CP013768.1_2452787_2453363_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|97aa|down_0|NZ_CP013768.1_2454312_2454603_+	NA	NA|233aa|down_1|NZ_CP013768.1_2454640_2455339_+	NA	NA|99aa|down_2|NZ_CP013768.1_2455355_2455652_+	NA	NA|282aa|down_3|NZ_CP013768.1_2455775_2456621_+	NA	NA|128aa|down_4|NZ_CP013768.1_2456825_2457209_+	NA	NA|192aa|down_5|NZ_CP013768.1_2457481_2458057_+	NA	NA|278aa|down_6|NZ_CP013768.1_2458114_2458948_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP013768.1_2459063_2460248_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP013768.1_2460266_2461211_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP013768.1_2461515_2462301_+	TIGR03545, TIGR03545, TIGR03545 family protein
GCF_001932755.1_ASM193275v1	NZ_CP013769	Piscirickettsia salmonis strain PM23019A plasmid p1PS3, complete sequence	1	106938-107161	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	RT,DinG,DEDDh,cas3,csa3	NA|86aa|up_9|NZ_CP013769.1_98878_99136_-,NA|49aa|up_3|NZ_CP013769.1_102624_102771_+,NA|111aa|down_4|NZ_CP013769.1_112388_112721_-,NA|278aa|down_7|NZ_CP013769.1_114222_115056_+,NA|354aa|down_8|NZ_CP013769.1_115131_116193_+,NA|65aa|down_9|NZ_CP013769.1_117070_117265_+	NA|86aa|up_9|NZ_CP013769.1_98878_99136_-	NA	NA|336aa|up_8|NZ_CP013769.1_99204_100212_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|up_7|NZ_CP013769.1_100172_100538_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_6|NZ_CP013769.1_100483_101059_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|85aa|up_5|NZ_CP013769.1_101062_101317_-	pfam01527, HTH_Tnp_1, Transposase	RT|376aa|up_4|NZ_CP013769.1_101276_102404_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP013769.1_102624_102771_+	NA	NA|272aa|up_2|NZ_CP013769.1_103100_103916_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP013769.1_104161_104752_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP013769.1_105706_106726_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP013769.1_107649_108378_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP013769.1_108580_111157_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|52aa|down_2|NZ_CP013769.1_111451_111607_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|243aa|down_3|NZ_CP013769.1_111630_112359_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|111aa|down_4|NZ_CP013769.1_112388_112721_-	NA	NA|114aa|down_5|NZ_CP013769.1_112791_113133_-	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_6|NZ_CP013769.1_113288_114017_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|278aa|down_7|NZ_CP013769.1_114222_115056_+	NA	NA|354aa|down_8|NZ_CP013769.1_115131_116193_+	NA	NA|65aa|down_9|NZ_CP013769.1_117070_117265_+	NA
