assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001932735.1_ASM193273v1	NZ_CP013762	Piscirickettsia salmonis strain PM21567A, complete genome	1	745182-745302	1	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|158aa|up_9|NZ_CP013762.1_736294_736768_-,NA|71aa|up_5|NZ_CP013762.1_742169_742382_+,NA|137aa|up_2|NZ_CP013762.1_743660_744071_+,NA|141aa|up_1|NZ_CP013762.1_744314_744737_-,NA|47aa|up_0|NZ_CP013762.1_744769_744910_+,NA	NA|158aa|up_9|NZ_CP013762.1_736294_736768_-	NA	NA|420aa|up_8|NZ_CP013762.1_736900_738160_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_7|NZ_CP013762.1_738615_740697_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_6|NZ_CP013762.1_741000_742011_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|71aa|up_5|NZ_CP013762.1_742169_742382_+	NA	NA|122aa|up_4|NZ_CP013762.1_742443_742809_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_3|NZ_CP013762.1_742754_743330_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|up_2|NZ_CP013762.1_743660_744071_+	NA	NA|141aa|up_1|NZ_CP013762.1_744314_744737_-	NA	NA|47aa|up_0|NZ_CP013762.1_744769_744910_+	NA	NA|296aa|down_0|NZ_CP013762.1_746679_747566_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_1|NZ_CP013762.1_748249_748645_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP013762.1_748641_749436_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP013762.1_749614_750340_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP013762.1_750585_751773_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|243aa|down_5|NZ_CP013762.1_752104_752833_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_6|NZ_CP013762.1_753314_753998_+	pfam02661, Fic, Fic/DOC family	NA|195aa|down_7|NZ_CP013762.1_754001_754586_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|243aa|down_8|NZ_CP013762.1_754742_755471_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|down_9|NZ_CP013762.1_755856_756743_+	pfam13358, DDE_3, DDE superfamily endonuclease
GCF_001932735.1_ASM193273v1	NZ_CP013762	Piscirickettsia salmonis strain PM21567A, complete genome	2	910128-910257	2	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	TTAAAAAATACAATAAAGAAAAACGATGCCTTCTCCTTACAGTTAT	46	1	40	910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211|910174-910211	NZ_CP013762.1_139969-140006|NZ_CP013762.1_219177-219140|NZ_CP013762.1_389098-389061|NZ_CP013762.1_411242-411205|NZ_CP013762.1_476509-476546|NZ_CP013762.1_479809-479772|NZ_CP013762.1_742381-742418|NZ_CP013762.1_812135-812172|NZ_CP013762.1_973980-974017|NZ_CP013762.1_1006748-1006711|NZ_CP013762.1_1037575-1037612|NZ_CP013762.1_1079784-1079821|NZ_CP013762.1_1084456-1084493|NZ_CP013762.1_1204827-1204790|NZ_CP013762.1_1215323-1215360|NZ_CP013762.1_1386470-1386433|NZ_CP013762.1_1389833-1389870|NZ_CP013762.1_1399585-1399622|NZ_CP013762.1_1597464-1597501|NZ_CP013762.1_1687595-1687558|NZ_CP013762.1_1774549-1774512|NZ_CP013762.1_1790577-1790540|NZ_CP013762.1_1908481-1908444|NZ_CP013762.1_1955026-1955063|NZ_CP013762.1_2011854-2011891|NZ_CP013762.1_2137012-2136975|NZ_CP013762.1_2153587-2153624|NZ_CP013762.1_2244446-2244409|NZ_CP013762.1_2314924-2314887|NZ_CP013762.1_2355443-2355406|NZ_CP013762.1_2701732-2701695|NZ_CP013762.1_2750584-2750547|NZ_CP013762.1_2752661-2752698|NZ_CP013762.1_2784634-2784671|NZ_CP013762.1_2940036-2940073|NZ_CP013762.1_2964171-2964208|NZ_CP013762.1_3006022-3006059|NZ_CP013762.1_658867-658904|NZ_CP013763.1_75046-75009|NZ_CP013763.1_85712-85749	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|192aa|up_5|NZ_CP013762.1_905853_906429_-,NA|128aa|up_4|NZ_CP013762.1_906701_907085_-,NA|282aa|up_3|NZ_CP013762.1_907289_908135_-,NA|99aa|up_2|NZ_CP013762.1_908258_908555_-,NA|233aa|up_1|NZ_CP013762.1_908571_909270_-,NA|97aa|up_0|NZ_CP013762.1_909307_909598_-,NA|105aa|down_1|NZ_CP013762.1_911163_911478_+,NA|65aa|down_5|NZ_CP013762.1_915358_915553_+,NA|73aa|down_8|NZ_CP013762.1_918427_918646_+,NA|485aa|down_9|NZ_CP013762.1_919508_920963_+	NA|262aa|up_9|NZ_CP013762.1_901609_902395_-	TIGR03545, TIGR03545, TIGR03545 family protein	NA|315aa|up_8|NZ_CP013762.1_902699_903644_+	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|395aa|up_7|NZ_CP013762.1_903662_904847_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|278aa|up_6|NZ_CP013762.1_904962_905796_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|192aa|up_5|NZ_CP013762.1_905853_906429_-	NA	NA|128aa|up_4|NZ_CP013762.1_906701_907085_-	NA	NA|282aa|up_3|NZ_CP013762.1_907289_908135_-	NA	NA|99aa|up_2|NZ_CP013762.1_908258_908555_-	NA	NA|233aa|up_1|NZ_CP013762.1_908571_909270_-	NA	NA|97aa|up_0|NZ_CP013762.1_909307_909598_-	NA	NA|192aa|down_0|NZ_CP013762.1_910547_911123_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|down_1|NZ_CP013762.1_911163_911478_+	NA	NA|192aa|down_2|NZ_CP013762.1_911423_911999_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|468aa|down_3|NZ_CP013762.1_912049_913453_-	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|354aa|down_4|NZ_CP013762.1_913614_914676_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|65aa|down_5|NZ_CP013762.1_915358_915553_+	NA	NA|329aa|down_6|NZ_CP013762.1_915690_916677_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|85aa|down_7|NZ_CP013762.1_917399_917654_-	PRK08116, PRK08116, hypothetical protein; Validated	NA|73aa|down_8|NZ_CP013762.1_918427_918646_+	NA	NA|485aa|down_9|NZ_CP013762.1_919508_920963_+	NA
GCF_001932735.1_ASM193273v1	NZ_CP013762	Piscirickettsia salmonis strain PM21567A, complete genome	3	2611121-2611227	3	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|154aa|up_7|NZ_CP013762.1_2599938_2600400_+,NA|53aa|up_5|NZ_CP013762.1_2602820_2602979_-,NA|62aa|up_4|NZ_CP013762.1_2603335_2603521_+,NA|105aa|up_2|NZ_CP013762.1_2608217_2608532_-,NA|87aa|up_1|NZ_CP013762.1_2608789_2609050_+,NA|86aa|down_0|NZ_CP013762.1_2611931_2612189_+,NA|204aa|down_4|NZ_CP013762.1_2616186_2616798_+,NA|87aa|down_5|NZ_CP013762.1_2616982_2617243_+,NA|67aa|down_7|NZ_CP013762.1_2618792_2618993_-	NA|602aa|up_9|NZ_CP013762.1_2596682_2598488_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_8|NZ_CP013762.1_2598971_2599769_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_7|NZ_CP013762.1_2599938_2600400_+	NA	NA|652aa|up_6|NZ_CP013762.1_2600698_2602654_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|53aa|up_5|NZ_CP013762.1_2602820_2602979_-	NA	NA|62aa|up_4|NZ_CP013762.1_2603335_2603521_+	NA	NA|330aa|up_3|NZ_CP013762.1_2603854_2604844_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP013762.1_2608217_2608532_-	NA	NA|87aa|up_1|NZ_CP013762.1_2608789_2609050_+	NA	NA|163aa|up_0|NZ_CP013762.1_2609069_2609558_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP013762.1_2611931_2612189_+	NA	NA|336aa|down_1|NZ_CP013762.1_2612188_2613196_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP013762.1_2613220_2614786_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP013762.1_2614992_2615820_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP013762.1_2616186_2616798_+	NA	NA|87aa|down_5|NZ_CP013762.1_2616982_2617243_+	NA	NA|318aa|down_6|NZ_CP013762.1_2617416_2618370_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP013762.1_2618792_2618993_-	NA	NA|269aa|down_8|NZ_CP013762.1_2619367_2620174_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP013762.1_2620279_2621251_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_001932735.1_ASM193273v1	NZ_CP013763	Piscirickettsia salmonis strain PM21567A plasmid p1PS2, complete sequence	1	67707-68218	1	CRT	no	RT	RT	Unclear	TTTGTGTTCCGTTTGTGTTCCGTTT	25	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|354aa|up_8|NZ_CP013763.1_58672_59734_-,NA|111aa|up_4|NZ_CP013763.1_62145_62478_+,NA|49aa|down_3|NZ_CP013763.1_72384_72531_-,NA|86aa|down_9|NZ_CP013763.1_76019_76277_+	NA|361aa|up_9|NZ_CP013763.1_57560_58643_+	pfam00665, rve, Integrase core domain	NA|354aa|up_8|NZ_CP013763.1_58672_59734_-	NA	NA|189aa|up_7|NZ_CP013763.1_60076_60643_-	cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase	NA|243aa|up_6|NZ_CP013763.1_60849_61578_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|114aa|up_5|NZ_CP013763.1_61733_62075_+	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|111aa|up_4|NZ_CP013763.1_62145_62478_+	NA	NA|243aa|up_3|NZ_CP013763.1_62507_63236_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|52aa|up_2|NZ_CP013763.1_63259_63415_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|859aa|up_1|NZ_CP013763.1_63709_66286_-	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|243aa|up_0|NZ_CP013763.1_66489_67218_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|340aa|down_0|NZ_CP013763.1_68429_69449_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|197aa|down_1|NZ_CP013763.1_70403_70994_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|272aa|down_2|NZ_CP013763.1_71239_72055_-	pfam04986, Y2_Tnp, Putative transposase	NA|49aa|down_3|NZ_CP013763.1_72384_72531_-	NA	RT|376aa|down_4|NZ_CP013763.1_72751_73879_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|85aa|down_5|NZ_CP013763.1_73838_74093_+	pfam01527, HTH_Tnp_1, Transposase	NA|192aa|down_6|NZ_CP013763.1_74096_74672_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|down_7|NZ_CP013763.1_74617_74983_-	pfam13384, HTH_23, Homeodomain-like domain	NA|336aa|down_8|NZ_CP013763.1_74943_75951_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|down_9|NZ_CP013763.1_76019_76277_+	NA
