assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001931575.1_ASM193157v1	NZ_CP016408	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence	1	1346305-1346533	1	PILER-CR	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GAGCAGTGCAGCAACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCA	59	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,cas14j	NA,NA	NA|380aa|up_9|NZ_CP016408.1_1338054_1339194_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|up_8|NZ_CP016408.1_1339208_1339322_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|94aa|up_7|NZ_CP016408.1_1339458_1339740_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|up_6|NZ_CP016408.1_1339968_1340373_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|231aa|up_5|NZ_CP016408.1_1340369_1341062_+	PRK10801, PRK10801, Tol-Pal system protein TolQ	NA|143aa|up_4|NZ_CP016408.1_1341065_1341494_+	PRK11024, PRK11024, colicin uptake protein TolR; Provisional	NA|393aa|up_3|NZ_CP016408.1_1341558_1342737_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|431aa|up_2|NZ_CP016408.1_1342860_1344153_+	PRK03629, tolB, Tol-Pal system protein TolB	NA|175aa|up_1|NZ_CP016408.1_1344187_1344712_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|263aa|up_0|NZ_CP016408.1_1344721_1345510_+	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional	NA|348aa|down_0|NZ_CP016408.1_1346827_1347871_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|240aa|down_1|NZ_CP016408.1_1347895_1348615_+	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional	NA|313aa|down_2|NZ_CP016408.1_1348611_1349550_-	PRK03557, PRK03557, CDF family zinc transporter ZitB	NA|129aa|down_3|NZ_CP016408.1_1349660_1350047_-	pfam13985, YbgS, YbgS-like protein	NA|351aa|down_4|NZ_CP016408.1_1350366_1351419_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|182aa|down_5|NZ_CP016408.1_1351512_1352058_-	COG1838, FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]	NA|282aa|down_6|NZ_CP016408.1_1352072_1352918_-	PRK06246, PRK06246, fumarate hydratase; Provisional	NA|297aa|down_7|NZ_CP016408.1_1353047_1353938_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|328aa|down_8|NZ_CP016408.1_1353938_1354922_-	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT	NA|423aa|down_9|NZ_CP016408.1_1355144_1356413_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)
GCF_001931575.1_ASM193157v1	NZ_CP016408	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence	2	1391498-1391604	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTCACCCGATGAACCATGCGATAAACCATCCGATAACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,cas14j	NA|148aa|up_7|NZ_CP016408.1_1386559_1387003_-,NA|121aa|up_6|NZ_CP016408.1_1387019_1387382_-,NA|87aa|up_0|NZ_CP016408.1_1390824_1391085_+,NA|94aa|down_2|NZ_CP016408.1_1393955_1394237_+,NA|67aa|down_3|NZ_CP016408.1_1394239_1394440_+,NA|134aa|down_6|NZ_CP016408.1_1395051_1395453_+,NA|79aa|down_8|NZ_CP016408.1_1395614_1395851_+	NA|53aa|up_9|NZ_CP016408.1_1385471_1385630_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|211aa|up_8|NZ_CP016408.1_1385838_1386471_-	PRK09946, PRK09946, hypothetical protein; Provisional	NA|148aa|up_7|NZ_CP016408.1_1386559_1387003_-	NA	NA|121aa|up_6|NZ_CP016408.1_1387019_1387382_-	NA	NA|70aa|up_5|NZ_CP016408.1_1387749_1387959_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|340aa|up_4|NZ_CP016408.1_1388105_1389125_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|237aa|up_3|NZ_CP016408.1_1389360_1390071_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|76aa|up_2|NZ_CP016408.1_1390148_1390376_+	pfam13384, HTH_23, Homeodomain-like domain	NA|97aa|up_1|NZ_CP016408.1_1390512_1390803_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|87aa|up_0|NZ_CP016408.1_1390824_1391085_+	NA	NA|459aa|down_0|NZ_CP016408.1_1392004_1393381_+	TIGR00665, DnaB, replicative DNA helicase	NA|91aa|down_1|NZ_CP016408.1_1393452_1393725_+	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|94aa|down_2|NZ_CP016408.1_1393955_1394237_+	NA	NA|67aa|down_3|NZ_CP016408.1_1394239_1394440_+	NA	NA|141aa|down_4|NZ_CP016408.1_1394442_1394865_+	PRK09741, PRK09741, hypothetical protein; Provisional	NA|59aa|down_5|NZ_CP016408.1_1394872_1395049_+	pfam05322, NinE, NINE Protein	NA|134aa|down_6|NZ_CP016408.1_1395051_1395453_+	NA	NA|59aa|down_7|NZ_CP016408.1_1395445_1395622_+	pfam05810, NinF, NinF protein	NA|79aa|down_8|NZ_CP016408.1_1395614_1395851_+	NA	NA|157aa|down_9|NZ_CP016408.1_1395831_1396302_+	cd15823, SPRY_PRY_TRIM6, PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)
GCF_001931575.1_ASM193157v1	NZ_CP016408	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence	3	3001647-3001754	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGTTCATCGGATGGTTTATCGCATGGTTCATCGGGTGAA	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,cas14j	NA|79aa|up_8|NZ_CP016408.1_2997400_2997637_-,NA|134aa|up_6|NZ_CP016408.1_2997798_2998200_-,NA|67aa|up_3|NZ_CP016408.1_2998811_2999012_-,NA|94aa|up_2|NZ_CP016408.1_2999014_2999296_-,NA|87aa|down_0|NZ_CP016408.1_3002166_3002427_-,NA|121aa|down_6|NZ_CP016408.1_3005869_3006232_+,NA|148aa|down_7|NZ_CP016408.1_3006248_3006692_+	NA|157aa|up_9|NZ_CP016408.1_2996949_2997420_-	cd15823, SPRY_PRY_TRIM6, PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89)	NA|79aa|up_8|NZ_CP016408.1_2997400_2997637_-	NA	NA|59aa|up_7|NZ_CP016408.1_2997629_2997806_-	pfam05810, NinF, NinF protein	NA|134aa|up_6|NZ_CP016408.1_2997798_2998200_-	NA	NA|59aa|up_5|NZ_CP016408.1_2998202_2998379_-	pfam05322, NinE, NINE Protein	NA|141aa|up_4|NZ_CP016408.1_2998386_2998809_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|67aa|up_3|NZ_CP016408.1_2998811_2999012_-	NA	NA|94aa|up_2|NZ_CP016408.1_2999014_2999296_-	NA	NA|91aa|up_1|NZ_CP016408.1_2999526_2999799_-	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|459aa|up_0|NZ_CP016408.1_2999870_3001247_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|down_0|NZ_CP016408.1_3002166_3002427_-	NA	NA|97aa|down_1|NZ_CP016408.1_3002448_3002739_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|76aa|down_2|NZ_CP016408.1_3002875_3003103_-	pfam13384, HTH_23, Homeodomain-like domain	NA|237aa|down_3|NZ_CP016408.1_3003180_3003891_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|340aa|down_4|NZ_CP016408.1_3004126_3005146_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|70aa|down_5|NZ_CP016408.1_3005292_3005502_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|121aa|down_6|NZ_CP016408.1_3005869_3006232_+	NA	NA|148aa|down_7|NZ_CP016408.1_3006248_3006692_+	NA	NA|211aa|down_8|NZ_CP016408.1_3006780_3007413_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|53aa|down_9|NZ_CP016408.1_3007621_3007780_+	pfam02061, Lambda_CIII, Lambda Phage CIII
GCF_001931575.1_ASM193157v1	NZ_CP016408	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence	4	3478742-3480638	3,2,3,1	CRISPRCasFinder,PILER-CR,PILER-CR,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTNGCGCGGGGAACAC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	30,29,29,27	30	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,cas14j	NA,NA	NA|254aa|up_9|NZ_CP016408.1_3470608_3471370_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP016408.1_3471350_3472400_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP016408.1_3472396_3472876_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP016408.1_3472875_3473586_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP016408.1_3473604_3473916_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP016408.1_3474106_3474430_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP016408.1_3474480_3475086_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP016408.1_3475072_3476512_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP016408.1_3476521_3477430_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP016408.1_3477680_3478727_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP016408.1_3480734_3481028_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP016408.1_3481027_3481948_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP016408.1_3481944_3482595_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP016408.1_3482576_3483323_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP016408.1_3483333_3484392_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP016408.1_3484405_3484966_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP016408.1_3484962_3486519_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP016408.1_3486530_3489194_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP016408.1_3489637_3490591_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP016408.1_3490803_3491538_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001931575.1_ASM193157v1	NZ_CP016408	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence	5	3496920-3498536	4,2,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,25	26	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,cas14j	NA,NA	cas7|353aa|up_9|NZ_CP016408.1_3483333_3484392_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP016408.1_3484405_3484966_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP016408.1_3484962_3486519_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP016408.1_3486530_3489194_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP016408.1_3489637_3490591_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP016408.1_3490803_3491538_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP016408.1_3491639_3493352_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP016408.1_3493351_3495151_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP016408.1_3495574_3495937_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP016408.1_3496024_3496822_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP016408.1_3498832_3499504_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP016408.1_3499639_3500938_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP016408.1_3501020_3502658_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP016408.1_3502885_3503686_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP016408.1_3504456_3504753_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP016408.1_3504718_3505075_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP016408.1_3505158_3507393_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP016408.1_3507444_3508740_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP016408.1_3508797_3511554_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP016408.1_3511597_3512740_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
