assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001929235.2_ASM192923v2	NZ_CP040687	Xanthomonas oryzae pv. oryzae strain IXO1088 chromosome, complete genome	1	890913-892130	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	Type I-U,Type I-C, Type I-U?	GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	18,18,18	18	TypeI-U,TypeI-C,TypeI-U?	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|374aa|up_9|NZ_CP040687.1_876835_877957_+	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|218aa|up_8|NZ_CP040687.1_877940_878594_+	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b	NA|268aa|up_7|NZ_CP040687.1_878583_879387_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|771aa|up_6|NZ_CP040687.1_879383_881696_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|280aa|up_5|NZ_CP040687.1_881692_882532_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|243aa|up_4|NZ_CP040687.1_882948_883677_-	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|192aa|up_3|NZ_CP040687.1_883782_884358_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|721aa|up_2|NZ_CP040687.1_884733_886896_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|386aa|up_1|NZ_CP040687.1_886931_888089_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|280aa|up_0|NZ_CP040687.1_888699_889539_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|319aa|down_0|NZ_CP040687.1_892237_893194_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|97aa|down_1|NZ_CP040687.1_899349_899640_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_2|NZ_CP040687.1_899654_900689_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_3|NZ_CP040687.1_900691_901324_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_4|NZ_CP040687.1_901343_902210_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|615aa|down_5|NZ_CP040687.1_902206_904051_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|225aa|down_6|NZ_CP040687.1_904047_904722_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|764aa|down_7|NZ_CP040687.1_904849_907141_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|322aa|down_8|NZ_CP040687.1_907252_908218_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|192aa|down_9|NZ_CP040687.1_908608_909184_-	PRK00884, PRK00884, Maf-like protein; Reviewed
GCF_001929235.2_ASM192923v2	NZ_CP040687	Xanthomonas oryzae pv. oryzae strain IXO1088 chromosome, complete genome	2	893222-899162	2,2,2,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	Type I-U,Type I-C, Type I-U?	GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC	31,31,31,31,31	0	0	NA	NA	I-C:I-C:I-C:I-C:I-C	88,90,90,88,88	90	TypeI-U,TypeI-C,TypeI-U?	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|218aa|up_9|NZ_CP040687.1_877940_878594_+	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b	NA|268aa|up_8|NZ_CP040687.1_878583_879387_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|771aa|up_7|NZ_CP040687.1_879383_881696_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|280aa|up_6|NZ_CP040687.1_881692_882532_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|243aa|up_5|NZ_CP040687.1_882948_883677_-	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|192aa|up_4|NZ_CP040687.1_883782_884358_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|721aa|up_3|NZ_CP040687.1_884733_886896_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|386aa|up_2|NZ_CP040687.1_886931_888089_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|280aa|up_1|NZ_CP040687.1_888699_889539_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|319aa|up_0|NZ_CP040687.1_892237_893194_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|97aa|down_0|NZ_CP040687.1_899349_899640_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NZ_CP040687.1_899654_900689_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_2|NZ_CP040687.1_900691_901324_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_3|NZ_CP040687.1_901343_902210_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|615aa|down_4|NZ_CP040687.1_902206_904051_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|225aa|down_5|NZ_CP040687.1_904047_904722_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|764aa|down_6|NZ_CP040687.1_904849_907141_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|322aa|down_7|NZ_CP040687.1_907252_908218_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|192aa|down_8|NZ_CP040687.1_908608_909184_-	PRK00884, PRK00884, Maf-like protein; Reviewed	NA|170aa|down_9|NZ_CP040687.1_909296_909806_+	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
GCF_001929235.2_ASM192923v2	NZ_CP040687	Xanthomonas oryzae pv. oryzae strain IXO1088 chromosome, complete genome	3	5067825-5067962	3	CRISPRCasFinder	no		cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	Orphan	TGAAGCCTTGCAATGGATGTGGTCTGGGGGTTTTTCAGGGGCGAC	45	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_1|NZ_CP040687.1_5057690_5057897_+,NA|150aa|down_2|NZ_CP040687.1_5069868_5070318_-,NA|74aa|down_3|NZ_CP040687.1_5070442_5070664_-,NA|62aa|down_4|NZ_CP040687.1_5071560_5071746_-,NA|107aa|down_7|NZ_CP040687.1_5077200_5077521_-	NA|491aa|up_9|NZ_CP040687.1_5047644_5049117_-	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|196aa|up_8|NZ_CP040687.1_5049113_5049701_-	pfam14103, DUF4276, Domain of unknown function (DUF4276)	NA|399aa|up_7|NZ_CP040687.1_5049700_5050897_-	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|201aa|up_6|NZ_CP040687.1_5050970_5051573_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|148aa|up_5|NZ_CP040687.1_5051748_5052192_+	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|250aa|up_4|NZ_CP040687.1_5052792_5053542_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|189aa|up_3|NZ_CP040687.1_5053538_5054105_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|454aa|up_2|NZ_CP040687.1_5054380_5055742_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|69aa|up_1|NZ_CP040687.1_5057690_5057897_+	NA	NA|249aa|up_0|NZ_CP040687.1_5062250_5062997_-	pfam15579, Imm52, Immunity protein 52	NA|223aa|down_0|NZ_CP040687.1_5067975_5068644_-	cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	NA|370aa|down_1|NZ_CP040687.1_5068656_5069766_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|150aa|down_2|NZ_CP040687.1_5069868_5070318_-	NA	NA|74aa|down_3|NZ_CP040687.1_5070442_5070664_-	NA	NA|62aa|down_4|NZ_CP040687.1_5071560_5071746_-	NA	NA|390aa|down_5|NZ_CP040687.1_5072778_5073948_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|424aa|down_6|NZ_CP040687.1_5073973_5075245_-	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|107aa|down_7|NZ_CP040687.1_5077200_5077521_-	NA	NA|389aa|down_8|NZ_CP040687.1_5077639_5078806_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|319aa|down_9|NZ_CP040687.1_5079069_5080026_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family
