The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	4411511	2941191	2976557	4411511	transposase,capsid,terminase,protease,tRNA,head,integrase	Tupanvirus(11.11%)	42	2969992:2970019	2980974:2981001
WP_003413486.1|2941191_2943270_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943378_2943606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943602_2944988_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945332_2945833_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945849_2946290_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946436_2947114_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947098_2947452_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947464_2947890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947886_2948561_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948638_2949460_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949595_2950489_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950491_2951310_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951324_2952506_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952564_2952996_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953509_2954751_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955060_2955423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955769_2956894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956895_2957435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957574_2958873_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958911_2959193_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959337_2959823_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959849_2960107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031664025.1|2960107_2962444_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962472_2962715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962715_2963393_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963588_2964245_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964407_2964854_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965028_2965361_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965480_2965840_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965941_2966400_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966535_2966916_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966912_2968409_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968598_2968835_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968907_2969081_+	hypothetical protein	NA	NA	NA	NA	NA
2969992:2970019	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970125_2970557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970553_2971552_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971565_2972030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087902221.1|2972162_2973423_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_015630490.1|2973450_2973636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2973797_2975237_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975244_2975778_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975930_2976557_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980974:2981001	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	4411511	3710418	3796347	4411511	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710418_3711679_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711734_3711896_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711917_3713447_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713379_3714318_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714326_3715694_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715762_3716980_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717075_3718584_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718580_3719732_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719922_3720768_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721242_3721683_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721716_3722586_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722606_3723617_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723901_3724534_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724600_3725830_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726112_3727462_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727473_3728613_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728609_3729341_+	methyltransferase	NA	NA	NA	NA	NA
WP_075155231.1|3729349_3736921_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743183_3743441_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_075155232.1|3743696_3753170_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753795_3754242_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003914152.1|3754278_3755097_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755313_3755601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031664068.1|3755937_3767088_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767331_3768126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768207_3768579_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_071854233.1|3768476_3768887_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_003417741.1|3768721_3768982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769096_3769486_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769499_3769793_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769789_3770635_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770758_3771034_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771030_3771288_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771329_3772520_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772636_3773005_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3773001_3773553_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773559_3774141_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774121_3774490_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774467_3774860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900676.1|3774856_3777487_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777722_3778187_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778553_3780320_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780320_3780965_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780963_3781398_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781486_3784726_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784917_3786258_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786299_3787475_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787528_3787633_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787711_3788353_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788353_3788602_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788606_3790034_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790141_3790795_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790833_3792339_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792343_3793234_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793242_3794853_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794797_3795043_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795085_3796347_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
