assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	1	335415-335987	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335835-335858|335880-335912|335934-335966	NZ_CP018778.1_338619-338642|NZ_CP018778.1_338646-338678|NZ_CP018778.1_338700-338732	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP018778.1_333189_333372_-,NA	NA|561aa|up_9|NZ_CP018778.1_324596_326279_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP018778.1_326295_328491_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP018778.1_328604_329738_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP018778.1_329734_330355_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP018778.1_330451_331033_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP018778.1_330962_331688_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP018778.1_331777_332698_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP018778.1_332737_333166_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP018778.1_333189_333372_-	NA	NA|615aa|up_0|NZ_CP018778.1_333466_335311_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|839aa|down_0|NZ_CP018778.1_336589_339106_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP018778.1_339400_341011_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP018778.1_341034_341943_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP018778.1_342166_344062_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP018778.1_344058_345675_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP018778.1_345671_349664_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP018778.1_349660_349969_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP018778.1_349971_351513_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP018778.1_351561_351855_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP018778.1_351884_352175_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	2	338137-338359	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP018778.1_333189_333372_-,NA	NA|561aa|up_9|NZ_CP018778.1_324596_326279_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP018778.1_326295_328491_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP018778.1_328604_329738_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP018778.1_329734_330355_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP018778.1_330451_331033_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP018778.1_330962_331688_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP018778.1_331777_332698_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP018778.1_332737_333166_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP018778.1_333189_333372_-	NA	NA|615aa|up_0|NZ_CP018778.1_333466_335311_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP018778.1_339400_341011_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP018778.1_341034_341943_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP018778.1_342166_344062_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP018778.1_344058_345675_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP018778.1_345671_349664_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP018778.1_349660_349969_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP018778.1_349971_351513_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP018778.1_351561_351855_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP018778.1_351884_352175_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP018778.1_352185_353073_+	pfam14011, ESX-1_EspG, EspG family
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	3	366500-367198	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366788-366829|366863-366895	NZ_CP018778.1_374819-374860|NZ_CP018778.1_373634-373666	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP018778.1_363512_363815_+,NA|161aa|down_1|NZ_CP018778.1_376608_377091_-,NA|410aa|down_5|NZ_CP018778.1_379207_380437_+	NA|262aa|up_9|NZ_CP018778.1_358207_358993_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP018778.1_358981_359785_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP018778.1_359794_361192_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP018778.1_361370_363146_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP018778.1_363288_363516_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP018778.1_363512_363815_+	NA	NA|74aa|up_3|NZ_CP018778.1_363862_364084_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP018778.1_364080_364506_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP018778.1_364641_365274_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP018778.1_365270_366179_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP018778.1_375949_376621_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP018778.1_376608_377091_-	NA	NA|239aa|down_2|NZ_CP018778.1_377148_377865_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP018778.1_377966_378623_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP018778.1_378692_379184_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP018778.1_379207_380437_+	NA	NA|621aa|down_6|NZ_CP018778.1_380591_382454_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP018778.1_382525_382912_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP018778.1_382914_383577_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP018778.1_383637_384522_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	4	631278-631415	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631296-631313|631296-631313|631380-631397	NZ_CP018778.1_22464-22481|NZ_CP018778.1_1412081-1412098|NZ_CP018778.1_973247-973264	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP018778.1_622116_622278_-,NA|478aa|up_0|NZ_CP018778.1_628293_629727_-,NA|450aa|down_2|NZ_CP018778.1_633050_634400_-,NA|93aa|down_5|NZ_CP018778.1_635930_636209_-	NA|325aa|up_9|NZ_CP018778.1_619886_620861_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP018778.1_620902_622120_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP018778.1_622116_622278_-	NA	NA|106aa|up_6|NZ_CP018778.1_622324_622642_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP018778.1_622788_624573_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP018778.1_624468_625476_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP018778.1_625557_626436_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP018778.1_626452_627247_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP018778.1_627243_628284_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP018778.1_628293_629727_-	NA	NA|211aa|down_0|NZ_CP018778.1_631738_632371_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP018778.1_632367_633030_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP018778.1_633050_634400_-	NA	NA|381aa|down_3|NZ_CP018778.1_634411_635554_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP018778.1_635568_635871_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP018778.1_635930_636209_-	NA	NA|418aa|down_6|NZ_CP018778.1_636205_637459_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP018778.1_637578_637965_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP018778.1_638027_638912_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP018778.1_639007_639910_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	5	692023-692099	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP018778.1_677707_677923_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP018778.1_677919_678327_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP018778.1_678386_679073_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP018778.1_679226_681860_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP018778.1_681882_684270_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP018778.1_684407_685130_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP018778.1_685126_685924_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP018778.1_685925_686813_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP018778.1_686818_688033_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP018778.1_689056_690502_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP018778.1_693234_694785_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP018778.1_694836_695229_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP018778.1_695225_695483_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP018778.1_695665_696901_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP018778.1_697151_697565_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP018778.1_697561_697798_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP018778.1_697901_698408_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP018778.1_698521_698992_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP018778.1_699035_699797_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP018778.1_699853_700165_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	6	926617-927564	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927400-927435|927400-927435|927400-927435	NZ_CP018778.1_675126-675091|NZ_CP018778.1_1213762-1213797|NZ_CP018778.1_2423807-2423772	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP018778.1_931574_932126_-,NA|81aa|down_8|NZ_CP018778.1_937589_937832_+	NA|214aa|up_9|NZ_CP018778.1_913556_914198_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|685aa|up_8|NZ_CP018778.1_914255_916310_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_7|NZ_CP018778.1_916475_917645_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_6|NZ_CP018778.1_917732_918749_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_5|NZ_CP018778.1_918910_919552_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_4|NZ_CP018778.1_919632_920688_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_3|NZ_CP018778.1_920739_921132_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_2|NZ_CP018778.1_921189_921612_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_1|NZ_CP018778.1_921966_922872_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP018778.1_922890_923706_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP018778.1_927833_930482_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP018778.1_930949_931594_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP018778.1_931574_932126_-	NA	NA|218aa|down_3|NZ_CP018778.1_932275_932929_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP018778.1_932999_934028_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP018778.1_934716_935487_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP018778.1_935573_936386_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP018778.1_936453_937314_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP018778.1_937589_937832_+	NA	NA|431aa|down_9|NZ_CP018778.1_938108_939401_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	7	1191329-1191437	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP018778.1_1180696_1182328_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP018778.1_1182403_1183468_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP018778.1_1183520_1183994_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP018778.1_1184027_1184891_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP018778.1_1184895_1185753_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP018778.1_1185753_1186836_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP018778.1_1186916_1187336_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP018778.1_1187447_1188014_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP018778.1_1188010_1188406_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP018778.1_1188433_1190437_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP018778.1_1192522_1194286_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP018778.1_1194282_1195056_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP018778.1_1195067_1196105_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP018778.1_1196291_1197128_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP018778.1_1197243_1198095_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP018778.1_1198168_1199386_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP018778.1_1199438_1200383_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_CP018778.1_1200779_1201673_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP018778.1_1201729_1203124_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP018778.1_1203325_1204048_+	pfam06271, RDD, RDD family
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	8	1211963-1212819	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	69	1212346-1212367|1212391-1212406|1212529-1212550|1212529-1212550|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664|1212646-1212664	NZ_CP018778.1_2960561-2960540|NZ_CP018778.1_2088607-2088592|NZ_CP018778.1_837432-837453|NZ_CP018778.1_1217657-1217678|NZ_CP018778.1_674790-674772|NZ_CP018778.1_840494-840512|NZ_CP018778.1_1213489-1213507|NZ_CP018778.1_1217630-1217648|NZ_CP018778.1_1217702-1217720|NZ_CP018778.1_1630717-1630699|NZ_CP018778.1_1633528-1633510|NZ_CP018778.1_1990810-1990792|NZ_CP018778.1_2061535-2061517|NZ_CP018778.1_2062081-2062063|NZ_CP018778.1_2802129-2802111|NZ_CP018778.1_2805639-2805621|NZ_CP018778.1_150211-150229|NZ_CP018778.1_333812-333794|NZ_CP018778.1_335231-335213|NZ_CP018778.1_338036-338018|NZ_CP018778.1_338432-338414|NZ_CP018778.1_338461-338479|NZ_CP018778.1_338555-338537|NZ_CP018778.1_363090-363072|NZ_CP018778.1_443446-443428|NZ_CP018778.1_546789-546771|NZ_CP018778.1_623979-623997|NZ_CP018778.1_624201-624219|NZ_CP018778.1_673956-673938|NZ_CP018778.1_840215-840233|NZ_CP018778.1_1090992-1091010|NZ_CP018778.1_1091640-1091658|NZ_CP018778.1_1095698-1095680|NZ_CP018778.1_1213018-1213036|NZ_CP018778.1_1213408-1213426|NZ_CP018778.1_1218050-1218068|NZ_CP018778.1_1489225-1489207|NZ_CP018778.1_1618681-1618663|NZ_CP018778.1_1619134-1619116|NZ_CP018778.1_1636041-1636023|NZ_CP018778.1_1636050-1636032|NZ_CP018778.1_1864330-1864312|NZ_CP018778.1_1864858-1864840|NZ_CP018778.1_1990114-1990096|NZ_CP018778.1_2001447-2001465|NZ_CP018778.1_2088805-2088787|NZ_CP018778.1_2303528-2303510|NZ_CP018778.1_2356981-2356963|NZ_CP018778.1_2419633-2419651|NZ_CP018778.1_2423720-2423702|NZ_CP018778.1_2569206-2569188|NZ_CP018778.1_2693499-2693517|NZ_CP018778.1_2795444-2795426|NZ_CP018778.1_2796026-2796008|NZ_CP018778.1_3054597-3054615|NZ_CP018778.1_3054696-3054714|NZ_CP018778.1_3705500-3705518|NZ_CP018778.1_3737477-3737459|NZ_CP018778.1_3738101-3738083|NZ_CP018778.1_3738344-3738326|NZ_CP018778.1_3738477-3738459|NZ_CP018778.1_3802340-3802358|NZ_CP018778.1_3802523-3802541|NZ_CP018778.1_3802691-3802709|NZ_CP018778.1_3930499-3930517|NZ_CP018778.1_3932229-3932247|NZ_CP018778.1_3940736-3940754|NZ_CP018778.1_4031706-4031688|NZ_CP018778.1_4094232-4094250	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP018778.1_1207395_1207662_+,NA|61aa|down_3|NZ_CP018778.1_1215237_1215420_+,NA|35aa|down_4|NZ_CP018778.1_1215529_1215634_+	NA|465aa|up_9|NZ_CP018778.1_1201729_1203124_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP018778.1_1203325_1204048_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP018778.1_1204079_1205246_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP018778.1_1205316_1205811_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP018778.1_1205996_1206431_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP018778.1_1206532_1207399_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP018778.1_1207395_1207662_+	NA	NA|674aa|up_2|NZ_CP018778.1_1207648_1209670_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP018778.1_1209768_1210497_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP018778.1_1210607_1211396_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP018778.1_1214052_1214373_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP018778.1_1214525_1214960_+	pfam00934, PE, PE family	NA|63aa|down_2|NZ_CP018778.1_1215037_1215226_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP018778.1_1215237_1215420_+	NA	NA|35aa|down_4|NZ_CP018778.1_1215529_1215634_+	NA	NA|152aa|down_5|NZ_CP018778.1_1215611_1216067_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP018778.1_1216481_1219043_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP018778.1_1219260_1220199_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP018778.1_1220586_1221867_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP018778.1_1221971_1222799_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	9	1305546-1305630	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCCCGTTGAGGAGCGGGGCAAT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|147aa|up_2|NZ_CP018778.1_1301320_1301761_+,NA	NA|247aa|up_9|NZ_CP018778.1_1293419_1294160_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|629aa|up_8|NZ_CP018778.1_1294181_1296068_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|636aa|up_7|NZ_CP018778.1_1296165_1298073_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|202aa|up_6|NZ_CP018778.1_1298100_1298706_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|347aa|up_5|NZ_CP018778.1_1298777_1299818_-	pfam00823, PPE, PPE family	NA|101aa|up_4|NZ_CP018778.1_1299835_1300138_-	pfam00934, PE, PE family	NA|304aa|up_3|NZ_CP018778.1_1300317_1301229_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|147aa|up_2|NZ_CP018778.1_1301320_1301761_+	NA	NA|309aa|up_1|NZ_CP018778.1_1301768_1302695_-	pfam00934, PE, PE family	NA|857aa|up_0|NZ_CP018778.1_1302944_1305515_+	PRK09234, fbiC, FO synthase; Reviewed	NA|111aa|down_0|NZ_CP018778.1_1305682_1306015_-	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|675aa|down_1|NZ_CP018778.1_1306215_1308240_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|190aa|down_2|NZ_CP018778.1_1308236_1308806_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|109aa|down_3|NZ_CP018778.1_1309018_1309345_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|363aa|down_4|NZ_CP018778.1_1309377_1310466_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|940aa|down_5|NZ_CP018778.1_1310493_1313313_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|2086aa|down_6|NZ_CP018778.1_1313739_1319997_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|473aa|down_7|NZ_CP018778.1_1320049_1321468_+	COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1003aa|down_8|NZ_CP018778.1_1321534_1324543_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|360aa|down_9|NZ_CP018778.1_1324546_1325626_-	pfam08237, PE-PPE, PE-PPE domain
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	10	1572201-1573273	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP018778.1_1563964_1564282_+,NA	NA|103aa|up_9|NZ_CP018778.1_1561479_1561788_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP018778.1_1561784_1563404_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP018778.1_1563964_1564282_+	NA	NA|209aa|up_6|NZ_CP018778.1_1564416_1565043_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP018778.1_1565108_1565441_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP018778.1_1565456_1566713_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP018778.1_1566840_1568052_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP018778.1_1568124_1569603_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP018778.1_1569599_1570985_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP018778.1_1571062_1572097_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP018778.1_1574127_1574529_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP018778.1_1574525_1574783_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP018778.1_1574865_1575825_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP018778.1_1575849_1576812_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP018778.1_1576945_1577548_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP018778.1_1577628_1579596_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP018778.1_1579613_1580438_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP018778.1_1580606_1581089_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP018778.1_1581160_1581985_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP018778.1_1582181_1583120_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	11	1636905-1637093	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	2	7	1636923-1636940|1636923-1636940|1636923-1636940|1636923-1636940|1636923-1636940|1637004-1637030|1637004-1637030	NZ_CP018778.1_1633528-1633545|NZ_CP018778.1_2802792-2802809|NZ_CP018778.1_673382-673399|NZ_CP018778.1_1189463-1189480|NZ_CP018778.1_3739761-3739778|NZ_CP018778.1_3931920-3931894|NZ_CP018778.1_3946701-3946675	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP018778.1_1623142_1623256_-,NA|137aa|up_7|NZ_CP018778.1_1623305_1623716_-,NA|288aa|down_2|NZ_CP018778.1_1640683_1641547_+	NA|162aa|up_9|NZ_CP018778.1_1622225_1622711_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP018778.1_1623142_1623256_-	NA	NA|137aa|up_7|NZ_CP018778.1_1623305_1623716_-	NA	NA|248aa|up_6|NZ_CP018778.1_1623732_1624476_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP018778.1_1624472_1625384_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP018778.1_1625436_1626981_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP018778.1_1626977_1628099_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP018778.1_1628115_1630218_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1325aa|up_1|NZ_CP018778.1_1630656_1634631_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP018778.1_1635032_1635959_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP018778.1_1638384_1639650_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP018778.1_1639677_1640664_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP018778.1_1640683_1641547_+	NA	NA|311aa|down_3|NZ_CP018778.1_1641496_1642429_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP018778.1_1642540_1643326_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP018778.1_1643322_1644264_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP018778.1_1644366_1646142_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP018778.1_1646189_1646996_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP018778.1_1646992_1649533_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP018778.1_1649529_1650723_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	12	2088277-2088531	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088358-2088375|2088358-2088375|2088448-2088465	NZ_CP018778.1_401115-401098|NZ_CP018778.1_607434-607417|NZ_CP018778.1_3450203-3450186	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP018778.1_2087636_2087900_-,NA	NA|165aa|up_9|NZ_CP018778.1_2073930_2074425_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP018778.1_2074828_2075506_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP018778.1_2075864_2078690_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP018778.1_2078916_2079777_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP018778.1_2079817_2080684_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP018778.1_2080688_2082575_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP018778.1_2082590_2084624_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP018778.1_2084743_2086969_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP018778.1_2087244_2087640_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP018778.1_2087636_2087900_-	NA	NA|346aa|down_0|NZ_CP018778.1_2089668_2090706_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP018778.1_2090705_2092073_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP018778.1_2092246_2093683_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP018778.1_2093718_2095170_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP018778.1_2095199_2096150_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP018778.1_2096164_2096581_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP018778.1_2096858_2097281_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP018778.1_2097329_2097632_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP018778.1_2097628_2097943_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP018778.1_2097942_2099676_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	13	2168808-2169027	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP018778.1_2159914_2160322_-,NA|127aa|down_5|NZ_CP018778.1_2176543_2176924_-	NA|741aa|up_9|NZ_CP018778.1_2153882_2156105_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP018778.1_2156142_2156586_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP018778.1_2156699_2157293_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP018778.1_2157375_2157981_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP018778.1_2158080_2159085_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP018778.1_2159184_2159937_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP018778.1_2159914_2160322_-	NA	NA|368aa|up_2|NZ_CP018778.1_2160456_2161560_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP018778.1_2161559_2162756_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP018778.1_2162925_2167305_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP018778.1_2171054_2171519_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP018778.1_2171616_2172480_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP018778.1_2172517_2173789_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP018778.1_2174060_2175176_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP018778.1_2175166_2176507_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP018778.1_2176543_2176924_-	NA	NA|621aa|down_6|NZ_CP018778.1_2177080_2178943_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP018778.1_2178950_2179430_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP018778.1_2179666_2180440_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP018778.1_2180443_2181211_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	14	3119188-3120542	2,8,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP018778.1_3112467_3112722_-,NA|135aa|up_7|NZ_CP018778.1_3112869_3113274_+,NA|64aa|up_6|NZ_CP018778.1_3113270_3113462_+,NA|86aa|up_4|NZ_CP018778.1_3115048_3115306_+,NA|104aa|up_3|NZ_CP018778.1_3115410_3115722_+,NA|203aa|up_2|NZ_CP018778.1_3116141_3116750_+,NA	NA|92aa|up_9|NZ_CP018778.1_3112016_3112292_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP018778.1_3112467_3112722_-	NA	NA|135aa|up_7|NZ_CP018778.1_3112869_3113274_+	NA	NA|64aa|up_6|NZ_CP018778.1_3113270_3113462_+	NA	NA|385aa|up_5|NZ_CP018778.1_3113660_3114815_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP018778.1_3115048_3115306_+	NA	NA|104aa|up_3|NZ_CP018778.1_3115410_3115722_+	NA	NA|203aa|up_2|NZ_CP018778.1_3116141_3116750_+	NA	NA|470aa|up_1|NZ_CP018778.1_3116820_3118230_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP018778.1_3118226_3119039_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP018778.1_3120568_3121830_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP018778.1_3123621_3123963_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP018778.1_3123963_3124980_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP018778.1_3124992_3126141_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP018778.1_3126236_3127364_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP018778.1_3127360_3128269_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP018778.1_3128249_3128960_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP018778.1_3128969_3129344_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP018778.1_3129340_3131779_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|NZ_CP018778.1_3131775_3132720_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	15	3121865-3123573	9,7,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP018778.1_3112467_3112722_-,NA|135aa|up_8|NZ_CP018778.1_3112869_3113274_+,NA|64aa|up_7|NZ_CP018778.1_3113270_3113462_+,NA|86aa|up_5|NZ_CP018778.1_3115048_3115306_+,NA|104aa|up_4|NZ_CP018778.1_3115410_3115722_+,NA|203aa|up_3|NZ_CP018778.1_3116141_3116750_+,NA	NA|85aa|up_9|NZ_CP018778.1_3112467_3112722_-	NA	NA|135aa|up_8|NZ_CP018778.1_3112869_3113274_+	NA	NA|64aa|up_7|NZ_CP018778.1_3113270_3113462_+	NA	NA|385aa|up_6|NZ_CP018778.1_3113660_3114815_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP018778.1_3115048_3115306_+	NA	NA|104aa|up_4|NZ_CP018778.1_3115410_3115722_+	NA	NA|203aa|up_3|NZ_CP018778.1_3116141_3116750_+	NA	NA|470aa|up_2|NZ_CP018778.1_3116820_3118230_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP018778.1_3118226_3119039_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP018778.1_3120568_3121830_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP018778.1_3123621_3123963_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP018778.1_3123963_3124980_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP018778.1_3124992_3126141_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP018778.1_3126236_3127364_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP018778.1_3127360_3128269_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP018778.1_3128249_3128960_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP018778.1_3128969_3129344_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP018778.1_3129340_3131779_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP018778.1_3131775_3132720_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP018778.1_3132897_3133443_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	16	3740671-3741431	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNTNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP018778.1_3755313_3755601_-,NA|87aa|down_9|NZ_CP018778.1_3768721_3768982_-	NA|282aa|up_9|NZ_CP018778.1_3719922_3720768_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP018778.1_3721242_3721683_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP018778.1_3721716_3722586_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP018778.1_3722606_3723617_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP018778.1_3723901_3724534_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP018778.1_3724600_3725830_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP018778.1_3726112_3727462_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP018778.1_3727473_3728613_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP018778.1_3728609_3729341_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP018778.1_3729349_3736921_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP018778.1_3743183_3743441_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP018778.1_3743696_3753170_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP018778.1_3753795_3754242_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP018778.1_3754278_3755097_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP018778.1_3755313_3755601_-	NA	NA|3717aa|down_5|NZ_CP018778.1_3755937_3767088_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP018778.1_3767331_3768126_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP018778.1_3768207_3768579_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_8|NZ_CP018778.1_3768476_3768887_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP018778.1_3768721_3768982_-	NA
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	17	3935827-3936225	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGCAACGGCGGAGCCGGCGG	23	8	75	3935850-3935886|3935910-3935931|3935955-3935976|3935955-3935976|3936000-3936027|3936051-3936072|3936051-3936072|3936096-3936120|3936096-3936120|3936096-3936120|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936144-3936162|3936186-3936201|3936186-3936201	NZ_CP018778.1_3935235-3935271|NZ_CP018778.1_3935295-3935316|NZ_CP018778.1_3935340-3935361|NZ_CP018778.1_1092240-1092261|NZ_CP018778.1_3935385-3935412|NZ_CP018778.1_3935436-3935457|NZ_CP018778.1_1565157-1565136|NZ_CP018778.1_3934818-3934842|NZ_CP018778.1_3934866-3934890|NZ_CP018778.1_3935481-3935505|NZ_CP018778.1_3934914-3934932|NZ_CP018778.1_3935529-3935547|NZ_CP018778.1_673821-673803|NZ_CP018778.1_674511-674493|NZ_CP018778.1_1216982-1217000|NZ_CP018778.1_2922360-2922378|NZ_CP018778.1_3931662-3931680|NZ_CP018778.1_3946443-3946461|NZ_CP018778.1_150529-150547|NZ_CP018778.1_337463-337445|NZ_CP018778.1_338660-338642|NZ_CP018778.1_362510-362528|NZ_CP018778.1_401031-401013|NZ_CP018778.1_455718-455736|NZ_CP018778.1_607350-607332|NZ_CP018778.1_672713-672695|NZ_CP018778.1_675108-675090|NZ_CP018778.1_839825-839843|NZ_CP018778.1_925663-925681|NZ_CP018778.1_928410-928392|NZ_CP018778.1_929274-929256|NZ_CP018778.1_1189169-1189151|NZ_CP018778.1_1217750-1217768|NZ_CP018778.1_1218164-1218182|NZ_CP018778.1_1218437-1218455|NZ_CP018778.1_1218857-1218875|NZ_CP018778.1_1573313-1573295|NZ_CP018778.1_1631806-1631788|NZ_CP018778.1_1633444-1633426|NZ_CP018778.1_1656165-1656147|NZ_CP018778.1_1990579-1990561|NZ_CP018778.1_2001774-2001792|NZ_CP018778.1_2045214-2045196|NZ_CP018778.1_2045823-2045805|NZ_CP018778.1_2062171-2062153|NZ_CP018778.1_2062243-2062225|NZ_CP018778.1_2374103-2374085|NZ_CP018778.1_2423360-2423342|NZ_CP018778.1_2424371-2424353|NZ_CP018778.1_2651974-2651992|NZ_CP018778.1_3163068-3163086|NZ_CP018778.1_3163491-3163509|NZ_CP018778.1_3802124-3802142|NZ_CP018778.1_3802199-3802217|NZ_CP018778.1_3803207-3803225|NZ_CP018778.1_3803354-3803372|NZ_CP018778.1_3803408-3803426|NZ_CP018778.1_3927526-3927544|NZ_CP018778.1_3927937-3927955|NZ_CP018778.1_3929341-3929359|NZ_CP018778.1_3930409-3930427|NZ_CP018778.1_3930436-3930454|NZ_CP018778.1_3931506-3931524|NZ_CP018778.1_3933360-3933378|NZ_CP018778.1_3933891-3933909|NZ_CP018778.1_3934494-3934512|NZ_CP018778.1_3935136-3935154|NZ_CP018778.1_3935463-3935481|NZ_CP018778.1_3935751-3935769|NZ_CP018778.1_3940868-3940886|NZ_CP018778.1_3944875-3944893|NZ_CP018778.1_3946287-3946305|NZ_CP018778.1_4369570-4369588|NZ_CP018778.1_3934956-3934971|NZ_CP018778.1_3935571-3935586	NA	8	8	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_6|NZ_CP018778.1_3953402_3954242_+	NA|351aa|up_9|NZ_CP018778.1_3916925_3917978_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP018778.1_3917977_3919180_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP018778.1_3919199_3920042_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP018778.1_3920076_3920841_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP018778.1_3921066_3922020_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP018778.1_3922044_3922236_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP018778.1_3922450_3923653_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP018778.1_3923677_3924799_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP018778.1_3924869_3926378_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_0|NZ_CP018778.1_3926548_3930694_+	pfam00934, PE, PE family	NA|516aa|down_0|NZ_CP018778.1_3936856_3938404_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|down_1|NZ_CP018778.1_3938400_3939237_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|down_2|NZ_CP018778.1_3945063_3945720_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|1490aa|down_3|NZ_CP018778.1_3945765_3950235_+	pfam00934, PE, PE family	NA|549aa|down_4|NZ_CP018778.1_3950795_3952442_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_5|NZ_CP018778.1_3952515_3953307_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_6|NZ_CP018778.1_3953402_3954242_+	NA	NA|399aa|down_7|NZ_CP018778.1_3954296_3955493_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_8|NZ_CP018778.1_3955521_3956232_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_9|NZ_CP018778.1_3956296_3957340_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	18	3936283-3936647	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGCAACGGCGGAGCCGGCGG	23	4	12	3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936306-3936327|3936513-3936534|3936558-3936579|3936603-3936624	NZ_CP018778.1_673112-673091|NZ_CP018778.1_673166-673145|NZ_CP018778.1_1217159-1217180|NZ_CP018778.1_1632745-1632724|NZ_CP018778.1_3162726-3162747|NZ_CP018778.1_3739815-3739794|NZ_CP018778.1_3779006-3779027|NZ_CP018778.1_3802814-3802835|NZ_CP018778.1_3930328-3930349|NZ_CP018778.1_1802784-1802763|NZ_CP018778.1_3741897-3741876|NZ_CP018778.1_3932328-3932349	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_6|NZ_CP018778.1_3953402_3954242_+	NA|351aa|up_9|NZ_CP018778.1_3916925_3917978_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP018778.1_3917977_3919180_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP018778.1_3919199_3920042_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP018778.1_3920076_3920841_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP018778.1_3921066_3922020_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP018778.1_3922044_3922236_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP018778.1_3922450_3923653_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP018778.1_3923677_3924799_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP018778.1_3924869_3926378_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_0|NZ_CP018778.1_3926548_3930694_+	pfam00934, PE, PE family	NA|516aa|down_0|NZ_CP018778.1_3936856_3938404_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|down_1|NZ_CP018778.1_3938400_3939237_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|down_2|NZ_CP018778.1_3945063_3945720_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|1490aa|down_3|NZ_CP018778.1_3945765_3950235_+	pfam00934, PE, PE family	NA|549aa|down_4|NZ_CP018778.1_3950795_3952442_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_5|NZ_CP018778.1_3952515_3953307_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_6|NZ_CP018778.1_3953402_3954242_+	NA	NA|399aa|down_7|NZ_CP018778.1_3954296_3955493_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_8|NZ_CP018778.1_3955521_3956232_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_9|NZ_CP018778.1_3956296_3957340_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	19	3948336-3950087	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948927-3948962|3948927-3948962|3948927-3948962|3948927-3948962|3948927-3948962|3949818-3949844|3949818-3949844|3949818-3949844|3949818-3949844	NZ_CP018778.1_3947043-3947078|NZ_CP018778.1_3947385-3947420|NZ_CP018778.1_3947976-3948011|NZ_CP018778.1_3948327-3948362|NZ_CP018778.1_3932784-3932819|NZ_CP018778.1_362030-362056|NZ_CP018778.1_3941237-3941263|NZ_CP018778.1_3941574-3941600|NZ_CP018778.1_3941911-3941937	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP018778.1_3953402_3954242_+	NA|318aa|up_9|NZ_CP018778.1_3921066_3922020_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP018778.1_3922044_3922236_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP018778.1_3922450_3923653_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP018778.1_3923677_3924799_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP018778.1_3924869_3926378_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP018778.1_3926548_3930694_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP018778.1_3930984_3936690_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP018778.1_3936856_3938404_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP018778.1_3938400_3939237_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP018778.1_3945063_3945720_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP018778.1_3950795_3952442_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP018778.1_3952515_3953307_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP018778.1_3953402_3954242_+	NA	NA|399aa|down_3|NZ_CP018778.1_3954296_3955493_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP018778.1_3955521_3956232_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP018778.1_3956296_3957340_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP018778.1_3957492_3958404_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP018778.1_3958419_3959484_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP018778.1_3959500_3960685_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP018778.1_3960726_3961758_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_001922485.1_ASM192248v1	NZ_CP018778	Mycobacterium tuberculosis strain DK9897, complete genome	20	4110648-4110736	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP018778.1_4101234_4102005_-,NA|119aa|up_3|NZ_CP018778.1_4107139_4107496_+,NA|52aa|up_2|NZ_CP018778.1_4107595_4107751_+,NA|233aa|up_0|NZ_CP018778.1_4109752_4110451_-,NA|126aa|down_6|NZ_CP018778.1_4115971_4116349_+	NA|288aa|up_9|NZ_CP018778.1_4099617_4100481_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP018778.1_4101234_4102005_-	NA	NA|549aa|up_7|NZ_CP018778.1_4102001_4103648_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP018778.1_4103644_4104508_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP018778.1_4104500_4105427_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP018778.1_4105428_4107054_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP018778.1_4107139_4107496_+	NA	NA|52aa|up_2|NZ_CP018778.1_4107595_4107751_+	NA	NA|652aa|up_1|NZ_CP018778.1_4107761_4109717_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP018778.1_4109752_4110451_-	NA	NA|173aa|down_0|NZ_CP018778.1_4110796_4111315_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP018778.1_4111315_4112299_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP018778.1_4112291_4113485_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP018778.1_4113490_4114312_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP018778.1_4114443_4115127_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP018778.1_4115126_4115864_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP018778.1_4115971_4116349_+	NA	NA|225aa|down_7|NZ_CP018778.1_4116447_4117122_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP018778.1_4117227_4118022_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP018778.1_4118028_4118484_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
