assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001922325.1_ASM192232v1	NZ_CP018763	Pediococcus acidilactici strain BCC1 chromosome, complete genome	1	429771-431258	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-A,Type II-B,Type II-C	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	22,22,8	22	TypeII-A,TypeII-B,TypeII-C	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|623aa|up_9|NZ_CP018763.1_413938_415807_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_8|NZ_CP018763.1_415933_417487_+	PRK00074, guaA, GMP synthase; Reviewed	NA|215aa|up_7|NZ_CP018763.1_417770_418415_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_6|NZ_CP018763.1_418606_420016_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|NZ_CP018763.1_420042_422577_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|194aa|up_4|NZ_CP018763.1_422804_423386_-	pfam09726, Macoilin, Macoilin family	cas9|1367aa|up_3|NZ_CP018763.1_423569_427670_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP018763.1_427885_428791_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP018763.1_428768_429074_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP018763.1_429070_429742_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|NZ_CP018763.1_431419_432067_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP018763.1_432256_432541_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP018763.1_432563_434186_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP018763.1_434484_436317_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|NZ_CP018763.1_436538_437714_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|NZ_CP018763.1_437781_438420_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|NZ_CP018763.1_438451_439771_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_7|NZ_CP018763.1_440055_440442_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NZ_CP018763.1_440570_441125_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_9|NZ_CP018763.1_441273_443637_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_001922325.1_ASM192232v1	NZ_CP018763	Pediococcus acidilactici strain BCC1 chromosome, complete genome	2	548388-548555	2	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	AGTTCGTGAAGTATGTAAAATGACATACCATTGAACC	37	0	0	NA	NA	NA	2	2	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|78aa|up_4|NZ_CP018763.1_544340_544574_-,NA|146aa|down_1|NZ_CP018763.1_551722_552160_-	NA|555aa|up_9|NZ_CP018763.1_536821_538486_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|310aa|up_8|NZ_CP018763.1_538707_539637_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|313aa|up_7|NZ_CP018763.1_539614_540553_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|445aa|up_6|NZ_CP018763.1_542308_543643_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|177aa|up_5|NZ_CP018763.1_543795_544326_-	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|78aa|up_4|NZ_CP018763.1_544340_544574_-	NA	NA|216aa|up_3|NZ_CP018763.1_545171_545819_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|91aa|up_2|NZ_CP018763.1_545848_546121_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|177aa|up_1|NZ_CP018763.1_546036_546567_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|198aa|up_0|NZ_CP018763.1_546536_547130_+	pfam09491, RE_AlwI, AlwI restriction endonuclease	NA|536aa|down_0|NZ_CP018763.1_549815_551423_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|146aa|down_1|NZ_CP018763.1_551722_552160_-	NA	NA|77aa|down_2|NZ_CP018763.1_552302_552533_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|385aa|down_3|NZ_CP018763.1_553067_554222_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|271aa|down_4|NZ_CP018763.1_555114_555927_+	pfam04991, LicD, LicD family	NA|267aa|down_5|NZ_CP018763.1_555951_556752_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|200aa|down_6|NZ_CP018763.1_557113_557713_+	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|75aa|down_7|NZ_CP018763.1_558049_558274_-	pfam05532, CsbD, CsbD-like	NA|265aa|down_8|NZ_CP018763.1_558668_559463_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_9|NZ_CP018763.1_559459_560290_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
GCF_001922325.1_ASM192232v1	NZ_CP018763	Pediococcus acidilactici strain BCC1 chromosome, complete genome	3	619828-619931	3	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|85aa|up_9|NZ_CP018763.1_602997_603252_+,NA|63aa|up_6|NZ_CP018763.1_607715_607904_+,NA|244aa|down_0|NZ_CP018763.1_621848_622580_-	NA|85aa|up_9|NZ_CP018763.1_602997_603252_+	NA	NA|326aa|up_8|NZ_CP018763.1_603882_604860_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|NZ_CP018763.1_605292_607500_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP018763.1_607715_607904_+	NA	NA|89aa|up_5|NZ_CP018763.1_608046_608313_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP018763.1_608312_610037_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP018763.1_610109_610883_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|NZ_CP018763.1_610968_612156_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NZ_CP018763.1_612186_613203_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|NZ_CP018763.1_613248_614253_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|NZ_CP018763.1_621848_622580_-	NA	NA|397aa|down_1|NZ_CP018763.1_622751_623942_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|NZ_CP018763.1_624117_625587_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|NZ_CP018763.1_625665_626229_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|NZ_CP018763.1_626221_626857_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|NZ_CP018763.1_627262_629680_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|NZ_CP018763.1_629936_631619_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|NZ_CP018763.1_631629_632349_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|NZ_CP018763.1_632454_633285_-	cd01171, YXKO-related, B	NA|154aa|down_9|NZ_CP018763.1_633410_633872_+	pfam00582, Usp, Universal stress protein family
