assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	1	832712-832794	1	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	GCGGTGAGGGCACCGCGCGCTCGACCGAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|149aa|up_5|NZ_CP018731.1_827190_827637_+,NA|97aa|up_4|NZ_CP018731.1_827623_827914_+,NA|73aa|up_0|NZ_CP018731.1_832017_832236_-,NA	NA|160aa|up_9|NZ_CP018731.1_823121_823601_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|430aa|up_8|NZ_CP018731.1_823750_825040_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|367aa|up_7|NZ_CP018731.1_825039_826140_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|192aa|up_6|NZ_CP018731.1_826366_826942_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|149aa|up_5|NZ_CP018731.1_827190_827637_+	NA	NA|97aa|up_4|NZ_CP018731.1_827623_827914_+	NA	NA|678aa|up_3|NZ_CP018731.1_828021_830055_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|103aa|up_2|NZ_CP018731.1_830180_830489_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|446aa|up_1|NZ_CP018731.1_830578_831916_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|73aa|up_0|NZ_CP018731.1_832017_832236_-	NA	NA|356aa|down_0|NZ_CP018731.1_832912_833980_+	pfam05175, MTS, Methyltransferase small domain	NA|238aa|down_1|NZ_CP018731.1_833976_834690_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|269aa|down_2|NZ_CP018731.1_834837_835644_-	cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs	NA|187aa|down_3|NZ_CP018731.1_835763_836324_-	pfam07209, DUF1415, Protein of unknown function (DUF1415)	NA|276aa|down_4|NZ_CP018731.1_836469_837297_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|162aa|down_5|NZ_CP018731.1_837304_837790_-	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ	NA|299aa|down_6|NZ_CP018731.1_837897_838794_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|336aa|down_7|NZ_CP018731.1_838948_839956_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|232aa|down_8|NZ_CP018731.1_839952_840648_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|268aa|down_9|NZ_CP018731.1_840784_841588_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	2	1103337-1103477	2	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	TCAAGGCCGACGGCAGCGGCACC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|102aa|up_7|NZ_CP018731.1_1090535_1090841_-,NA	NA|186aa|up_9|NZ_CP018731.1_1088973_1089531_+	pfam11539, DUF3228, Protein of unknown function (DUF3228)	NA|198aa|up_8|NZ_CP018731.1_1089739_1090333_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|102aa|up_7|NZ_CP018731.1_1090535_1090841_-	NA	NA|83aa|up_6|NZ_CP018731.1_1090854_1091103_-	PRK02958, tatA, Sec-independent protein translocase subunit TatA	NA|481aa|up_5|NZ_CP018731.1_1091437_1092880_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|842aa|up_4|NZ_CP018731.1_1093162_1095688_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|905aa|up_3|NZ_CP018731.1_1096089_1098804_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|191aa|up_2|NZ_CP018731.1_1098949_1099522_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|346aa|up_1|NZ_CP018731.1_1099518_1100556_+	pfam13387, DUF4105, Domain of unknown function (DUF4105)	NA|651aa|up_0|NZ_CP018731.1_1100633_1102586_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|409aa|down_0|NZ_CP018731.1_1104696_1105923_+	PRK10172, PRK10172, AppA family phytase/histidine-type acid phosphatase	NA|404aa|down_1|NZ_CP018731.1_1106809_1108021_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|363aa|down_2|NZ_CP018731.1_1108255_1109344_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|276aa|down_3|NZ_CP018731.1_1109374_1110202_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|333aa|down_4|NZ_CP018731.1_1110242_1111241_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|433aa|down_5|NZ_CP018731.1_1112914_1114213_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|323aa|down_6|NZ_CP018731.1_1115016_1115985_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|80aa|down_7|NZ_CP018731.1_1116176_1116416_+	pfam10636, hemP, Hemin uptake protein hemP	NA|744aa|down_8|NZ_CP018731.1_1116690_1118922_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|211aa|down_9|NZ_CP018731.1_1118927_1119560_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	3	1103559-1103632	3	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	TCAAGGCCGACGGCAGCGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|102aa|up_7|NZ_CP018731.1_1090535_1090841_-,NA	NA|186aa|up_9|NZ_CP018731.1_1088973_1089531_+	pfam11539, DUF3228, Protein of unknown function (DUF3228)	NA|198aa|up_8|NZ_CP018731.1_1089739_1090333_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|102aa|up_7|NZ_CP018731.1_1090535_1090841_-	NA	NA|83aa|up_6|NZ_CP018731.1_1090854_1091103_-	PRK02958, tatA, Sec-independent protein translocase subunit TatA	NA|481aa|up_5|NZ_CP018731.1_1091437_1092880_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|842aa|up_4|NZ_CP018731.1_1093162_1095688_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|905aa|up_3|NZ_CP018731.1_1096089_1098804_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|191aa|up_2|NZ_CP018731.1_1098949_1099522_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|346aa|up_1|NZ_CP018731.1_1099518_1100556_+	pfam13387, DUF4105, Domain of unknown function (DUF4105)	NA|651aa|up_0|NZ_CP018731.1_1100633_1102586_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|409aa|down_0|NZ_CP018731.1_1104696_1105923_+	PRK10172, PRK10172, AppA family phytase/histidine-type acid phosphatase	NA|404aa|down_1|NZ_CP018731.1_1106809_1108021_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|363aa|down_2|NZ_CP018731.1_1108255_1109344_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|276aa|down_3|NZ_CP018731.1_1109374_1110202_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|333aa|down_4|NZ_CP018731.1_1110242_1111241_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|433aa|down_5|NZ_CP018731.1_1112914_1114213_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|323aa|down_6|NZ_CP018731.1_1115016_1115985_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|80aa|down_7|NZ_CP018731.1_1116176_1116416_+	pfam10636, hemP, Hemin uptake protein hemP	NA|744aa|down_8|NZ_CP018731.1_1116690_1118922_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|211aa|down_9|NZ_CP018731.1_1118927_1119560_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	4	2317897-2318037	4	CRISPRCasFinder	no	WYL,cas3	cas3,RT,DinG,DEDDh,WYL,csa3	Unclear	TACTTGCGGCGTGTCCCGCGATGGTGGGCGGGCAAGGGCCCTGC	44	0	0	NA	NA	NA	1	1	Unclear	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|173aa|up_9|NZ_CP018731.1_2307119_2307638_-,NA|183aa|up_8|NZ_CP018731.1_2308223_2308772_-,NA|59aa|down_7|NZ_CP018731.1_2329244_2329421_-	NA|173aa|up_9|NZ_CP018731.1_2307119_2307638_-	NA	NA|183aa|up_8|NZ_CP018731.1_2308223_2308772_-	NA	NA|328aa|up_7|NZ_CP018731.1_2308774_2309758_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|490aa|up_6|NZ_CP018731.1_2310289_2311759_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|205aa|up_5|NZ_CP018731.1_2311828_2312443_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	WYL|322aa|up_4|NZ_CP018731.1_2312561_2313527_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|343aa|up_3|NZ_CP018731.1_2313576_2314605_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|215aa|up_2|NZ_CP018731.1_2314782_2315427_+	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|420aa|up_1|NZ_CP018731.1_2315426_2316686_+	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion]	NA|253aa|up_0|NZ_CP018731.1_2316678_2317437_+	COG2857, CYT1, Cytochrome c1 [Energy production and conversion]	NA|212aa|down_0|NZ_CP018731.1_2318258_2318894_+	PRK09481, sspA, stringent starvation protein A; Provisional	NA|148aa|down_1|NZ_CP018731.1_2318972_2319416_+	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|115aa|down_2|NZ_CP018731.1_2319665_2320010_-	pfam11743, DUF3301, Protein of unknown function (DUF3301)	cas3|1481aa|down_3|NZ_CP018731.1_2320440_2324883_+	COG1201, Lhr, Lhr-like helicases [General function prediction only]	NA|553aa|down_4|NZ_CP018731.1_2325758_2327417_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|170aa|down_5|NZ_CP018731.1_2327428_2327938_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|362aa|down_6|NZ_CP018731.1_2327990_2329076_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|59aa|down_7|NZ_CP018731.1_2329244_2329421_-	NA	NA|134aa|down_8|NZ_CP018731.1_2329799_2330201_-	COG2916, Hns, DNA-binding protein H-NS [General function prediction only]	NA|365aa|down_9|NZ_CP018731.1_2330425_2331520_-	TIGR01388, Ribonuclease_D, ribonuclease D
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	5	2681796-2681903	5	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	GTTGTTGCCGGTGAGCGTGAGCGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|63aa|up_4|NZ_CP018731.1_2666425_2666614_-,NA|225aa|up_1|NZ_CP018731.1_2670438_2671113_+,NA|60aa|down_0|NZ_CP018731.1_2685539_2685719_+,NA|86aa|down_5|NZ_CP018731.1_2690462_2690720_-	NA|254aa|up_9|NZ_CP018731.1_2662032_2662794_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|199aa|up_8|NZ_CP018731.1_2662790_2663387_+	pfam05401, NodS, Nodulation protein S (NodS)	NA|229aa|up_7|NZ_CP018731.1_2663383_2664070_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|157aa|up_6|NZ_CP018731.1_2664229_2664700_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|508aa|up_5|NZ_CP018731.1_2664768_2666292_-	PRK06184, PRK06184, hypothetical protein; Provisional	NA|63aa|up_4|NZ_CP018731.1_2666425_2666614_-	NA	NA|240aa|up_3|NZ_CP018731.1_2666852_2667572_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|321aa|up_2|NZ_CP018731.1_2667762_2668725_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|225aa|up_1|NZ_CP018731.1_2670438_2671113_+	NA	NA|950aa|up_0|NZ_CP018731.1_2671900_2674750_+	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|60aa|down_0|NZ_CP018731.1_2685539_2685719_+	NA	NA|604aa|down_1|NZ_CP018731.1_2685915_2687727_+	cd01948, EAL, EAL domain	NA|197aa|down_2|NZ_CP018731.1_2687736_2688327_-	COG3506, COG3506, Uncharacterized conserved protein [Function unknown]	NA|307aa|down_3|NZ_CP018731.1_2688374_2689295_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|170aa|down_4|NZ_CP018731.1_2689469_2689979_-	pfam05974, DUF892, Domain of unknown function (DUF892)	NA|86aa|down_5|NZ_CP018731.1_2690462_2690720_-	NA	NA|392aa|down_6|NZ_CP018731.1_2690869_2692045_-	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|395aa|down_7|NZ_CP018731.1_2692286_2693471_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|258aa|down_8|NZ_CP018731.1_2693527_2694301_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|350aa|down_9|NZ_CP018731.1_2694305_2695355_+	cd08946, SDR_e, extended (e) SDRs
GCF_001908775.1_ASM190877v1	NZ_CP018731	Xanthomonas hortorum pv. gardneri strain ICMP 7383 chromosome, complete genome	6	2920163-2920235	6	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	GCGAGTCCCTCGCAAGAGCCCGCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,PD-DExK	NA|129aa|up_7|NZ_CP018731.1_2910654_2911041_+,NA|355aa|up_2|NZ_CP018731.1_2916805_2917870_+,NA	NA|257aa|up_9|NZ_CP018731.1_2909217_2909988_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|189aa|up_8|NZ_CP018731.1_2910088_2910655_+	PRK04542, PRK04542, elongation factor P; Provisional	NA|129aa|up_7|NZ_CP018731.1_2910654_2911041_+	NA	NA|620aa|up_6|NZ_CP018731.1_2911218_2913078_-	pfam13387, DUF4105, Domain of unknown function (DUF4105)	NA|98aa|up_5|NZ_CP018731.1_2913074_2913368_-	TIGR02448, conserved_hypothetical_protein, conserverd hypothetical protein	NA|473aa|up_4|NZ_CP018731.1_2913402_2914821_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|414aa|up_3|NZ_CP018731.1_2915030_2916272_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|355aa|up_2|NZ_CP018731.1_2916805_2917870_+	NA	NA|200aa|up_1|NZ_CP018731.1_2917932_2918532_-	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|491aa|up_0|NZ_CP018731.1_2918674_2920147_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|477aa|down_0|NZ_CP018731.1_2920288_2921719_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|265aa|down_1|NZ_CP018731.1_2921929_2922725_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|218aa|down_2|NZ_CP018731.1_2923153_2923807_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|189aa|down_3|NZ_CP018731.1_2923847_2924414_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|233aa|down_4|NZ_CP018731.1_2924416_2925115_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|364aa|down_5|NZ_CP018731.1_2925477_2926569_+	pfam01650, Peptidase_C13, Peptidase C13 family	NA|529aa|down_6|NZ_CP018731.1_2926857_2928444_-	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|209aa|down_7|NZ_CP018731.1_2928613_2929240_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|259aa|down_8|NZ_CP018731.1_2929229_2930006_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|245aa|down_9|NZ_CP018731.1_2929999_2930734_-	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
