The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	249551	286887	5536506	head,portal,plate,terminase,lysis,capsid,integrase,tail	Salmonella_phage(87.18%)	47	249459:249477	286959:286977
249459:249477	attL	CAGGCAACAAAAAACCCAT	NA	NA	NA	NA
WP_014342959.1|249551_250532_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.2	1.4e-97
WP_004178082.1|251019_252507_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_004150866.1|252605_253550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152885.1|253561_254440_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.9	1.7e-30
WP_000188448.1|254585_254807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|254839_255349_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956179.1|255356_255557_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	97.0	1.6e-32
WP_000963473.1|255520_255862_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
WP_004150864.1|255929_256163_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	96.1	4.1e-32
WP_000752622.1|256162_256390_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	6.0e-36
WP_004150863.1|256386_257244_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.4	2.0e-156
WP_004150862.1|257240_259655_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001154434.1|259808_259997_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
WP_001217575.1|260007_260241_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_000700647.1|260355_261033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004199124.1|261308_263051_+	AIPR family protein	NA	NA	NA	NA	NA
WP_002895959.1|263112_264138_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
WP_004150858.1|264137_265904_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.0	0.0e+00
WP_002895967.1|266046_266880_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	88.8	6.3e-123
WP_002895972.1|266896_267955_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.1e-180
WP_000059191.1|267958_268609_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_002896151.1|268704_269169_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	8.4e-77
WP_002896155.1|269168_269372_+|tail	tail protein X	tail	A0A1S6KZY4	Salmonella_phage	88.1	1.3e-29
WP_002896158.1|269375_269591_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	90.1	3.6e-30
WP_002896161.1|269571_270081_+	lysozyme	NA	E5G6N1	Salmonella_phage	83.4	2.1e-81
WP_002896163.1|270085_270469_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	42.0	2.1e-17
WP_002896168.1|270465_270894_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	77.9	9.6e-51
WP_002896170.1|270880_271027_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	76.1	6.0e-13
WP_002896172.1|270989_271421_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	82.5	9.9e-64
WP_002896175.1|271413_271860_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	71.2	2.2e-50
WP_004150857.1|271856_272549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002896177.1|272643_273216_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	72.3	4.7e-77
WP_032441567.1|273212_273575_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	83.9	4.9e-48
WP_002896182.1|273561_274470_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	66.9	7.6e-106
WP_004150856.1|274462_275062_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	60.5	1.3e-58
WP_019724930.1|277280_278015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002896186.1|278018_278750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002896188.1|278746_278950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002896191.1|278979_280056_+|tail	phage tail protein	tail	Q37842	Escherichia_phage	44.8	1.2e-25
WP_002896193.1|280194_281367_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	93.3	1.9e-210
WP_002896201.1|281376_281892_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	85.4	1.3e-81
WP_002896204.1|281944_282244_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	79.0	3.7e-33
WP_002896220.1|282258_282378_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_002896222.1|282370_284998_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	42.0	5.6e-117
WP_002896224.1|284994_285480_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	75.6	7.2e-63
WP_002896225.1|285476_286577_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	87.4	4.9e-176
WP_000972391.1|286668_286887_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
286959:286977	attR	CAGGCAACAAAAAACCCAT	NA	NA	NA	NA
>prophage 2
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	321303	330767	5536506	tRNA,protease	Dickeya_phage(16.67%)	8	NA	NA
WP_002896440.1|321303_322419_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
WP_004150848.1|322415_324356_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896516.1|324432_324654_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_002896520.1|324979_325297_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896522.1|325327_327607_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_001040187.1|327727_327946_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002898014.1|328299_329001_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_004150847.1|329045_330767_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
>prophage 3
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	558845	646724	5536506	head,tRNA,portal,holin,terminase,capsid,integrase,tail	Klebsiella_phage(44.19%)	97	555143:555157	613263:613277
555143:555157	attL	GGTGACGCAGCAGGG	NA	NA	NA	NA
WP_004150803.1|558845_559952_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_004150802.1|560008_560467_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_004150801.1|560483_561134_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_004150800.1|561374_562625_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
WP_032418030.1|562742_563870_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	O21925	Phage_21	58.4	4.4e-119
WP_012542206.1|563850_564096_-	excisionase	NA	NA	NA	NA	NA
WP_062954978.1|564148_566287_-	exonuclease	NA	S4TNL0	Salmonella_phage	42.7	5.6e-99
WP_014228879.1|566428_566773_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_023279538.1|566815_567010_-	DUF1482 family protein	NA	NA	NA	NA	NA
WP_040234937.1|567400_567715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077257742.1|568036_568474_-	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	62.2	1.3e-39
WP_071561166.1|568562_568787_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	62.5	1.3e-19
WP_046622349.1|568789_569344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353967.1|569388_570408_+	helix-turn-helix domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	40.0	1.1e-31
WP_047667474.1|570400_570865_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	72.2	4.1e-63
WP_032443841.1|570878_571319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062954977.1|571667_573059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062954989.1|573147_574017_-	bacteriophage abortive infection AbiH family protein	NA	NA	NA	NA	NA
WP_062954976.1|574368_575082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062954975.1|575255_576617_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
WP_004178082.1|577454_578942_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_025368263.1|579020_579254_+	DinI-like family protein	NA	K7PM44	Enterobacteria_phage	71.1	3.7e-25
WP_071531363.1|579316_579556_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	58.6	1.9e-16
WP_025861428.1|579596_579989_+	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	8.0e-12
WP_062955112.1|580188_581220_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	49.6	4.7e-96
WP_025861432.1|581236_581839_+	hypothetical protein	NA	H9C175	Pectobacterium_phage	68.6	1.1e-76
WP_004147997.1|582082_582286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004147999.1|583023_583173_-	small membrane protein	NA	NA	NA	NA	NA
WP_016160648.1|584090_584306_+|holin	class II holin family protein	holin	A5LH82	Enterobacteria_phage	88.7	2.7e-30
WP_032432826.1|584305_584803_+	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	84.6	1.1e-77
WP_016160650.1|584799_585150_+	hypothetical protein	NA	R9TPM9	Aeromonas_phage	38.1	7.9e-11
WP_049115059.1|586099_586537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032749552.1|586575_586800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162838183.1|586978_587143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032428746.1|587126_587489_+	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	83.3	1.2e-57
WP_023297386.1|587440_587764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014907818.1|587760_588192_+	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
WP_012542168.1|588440_588875_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
WP_021462603.1|588874_590596_+|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.5e-190
WP_017898992.1|590589_590769_+	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	3.1e-11
WP_023279520.1|590768_592028_+|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	89.8	1.8e-222
WP_014907815.1|592064_592985_+	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
WP_023328094.1|593062_594349_+|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.0	9.8e-216
WP_049010370.1|594407_594668_+	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	60.5	7.4e-22
WP_020317538.1|594648_594966_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	89.8	1.5e-45
WP_023328092.1|594962_595301_+|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	90.2	2.8e-53
WP_017880258.1|595281_595671_+	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	86.0	9.6e-58
WP_168895379.1|595676_596069_+	HK97 gp10 family phage protein	NA	Q6UAX1	Klebsiella_phage	93.8	7.1e-61
WP_023328090.1|596100_596562_+	hypothetical protein	NA	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
WP_014228914.1|596619_596985_+|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
WP_023328089.1|597217_600553_+|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	88.3	0.0e+00
WP_023328088.1|600552_600891_+|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	88.4	1.4e-57
WP_023328087.1|600887_601643_+|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	80.5	4.6e-125
WP_047666389.1|601644_602355_+	C40 family peptidase	NA	Q6UAW4	Klebsiella_phage	90.3	1.9e-136
WP_047666390.1|602396_602819_+	hypothetical protein	NA	J9Q806	Salmonella_phage	50.0	5.9e-29
WP_023328085.1|602845_603439_+|tail	tail assembly protein	tail	K7PHE5	Enterobacteria_phage	76.6	8.0e-80
WP_073547060.1|603501_616206_+	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	47.1	0.0e+00
613263:613277	attR	GGTGACGCAGCAGGG	NA	NA	NA	NA
WP_023328083.1|616274_617771_+|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	63.7	1.4e-125
WP_004892953.1|617925_618078_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
WP_004150799.1|618350_619064_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004150798.1|619060_619453_-	amino acid-binding protein	NA	NA	NA	NA	NA
WP_004150797.1|619445_619769_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_004225560.1|619887_620064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004140530.1|620205_620433_-	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
WP_004140529.1|620545_621739_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_004219247.1|621988_622141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150795.1|622360_622546_+	general stress protein	NA	NA	NA	NA	NA
WP_004150794.1|622636_623131_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004140514.1|623157_623664_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004140512.1|623680_624568_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_004150793.1|624623_626030_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004140509.1|626026_627037_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_004140506.1|627152_627350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150791.1|627916_628549_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_004140501.1|628588_628768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150790.1|629165_629852_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004150789.1|629964_630129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004140497.1|630162_631671_-	UbiD family decarboxylase	NA	NA	NA	NA	NA
WP_004150788.1|631791_632682_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004150787.1|632688_634473_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
WP_004150785.1|634546_635755_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_004150784.1|636057_637101_+	type II asparaginase	NA	NA	NA	NA	NA
WP_004148038.1|637762_638677_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
WP_004150783.1|638766_639405_+	leucine efflux protein LeuE	NA	NA	NA	NA	NA
WP_004140489.1|639535_639799_+	DUF2534 family protein	NA	NA	NA	NA	NA
WP_004140488.1|639858_639984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099119317.1|640101_640176_-	protein YoaJ	NA	NA	NA	NA	NA
WP_004150782.1|640175_640277_-	YoaK family small membrane protein	NA	NA	NA	NA	NA
WP_004150781.1|640334_641348_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.4e-12
WP_004150780.1|641648_641888_+	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_014343000.1|641877_642216_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_004150778.1|642220_642730_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_004140471.1|642875_643568_+	CTP synthase	NA	NA	NA	NA	NA
WP_014343001.1|643599_644775_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_004140469.1|644882_645677_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002901080.1|645660_646107_-	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_002901088.1|646223_646724_-|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
>prophage 4
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	774396	796013	5536506	integrase,holin,transposase	Enterobacteria_phage(40.0%)	34	766374:766389	789213:789228
766374:766389	attL	CATTTTTTTGCTCGTT	NA	NA	NA	NA
WP_004140269.1|774396_775206_-	peptide ABC transporter ATP-binding protein SapF	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	2.1e-14
WP_004140266.1|775207_776200_-	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	27.2	3.0e-07
WP_004151901.1|776199_777090_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_004151900.1|777236_778454_+|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	51.9	8.6e-121
WP_004151899.1|778661_779324_-	DNA methyltransferase	NA	G8C7S6	Escherichia_phage	84.6	2.7e-105
WP_004151898.1|779320_779749_-	hypothetical protein	NA	M9NYX4	Enterobacteria_phage	80.3	7.5e-64
WP_004201102.1|779745_780426_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	91.2	8.2e-121
WP_088224434.1|780427_780715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004201103.1|780711_781557_-	phage recombination protein Bet	NA	A0A1I9KF88	Aeromonas_phage	59.2	1.8e-69
WP_004201105.1|781572_781857_-	host nuclease inhibitor GamL	NA	G8C7T1	Escherichia_phage	79.8	1.1e-39
WP_073547062.1|781945_782140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004219883.1|782132_782258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004201108.1|782568_782772_+	hypothetical protein	NA	A0A192Y6Q5	Salmonella_phage	71.6	3.9e-18
WP_004201109.1|782853_783930_-	ParA family protein	NA	H2BD62	Pseudomonas_phage	37.9	9.1e-58
WP_004201113.1|784217_784916_-	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	84.1	3.7e-108
WP_004201115.1|785027_785255_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	77.1	1.4e-24
WP_001548453.1|785295_785517_+	hypothetical protein	NA	G8EYH8	Enterobacteria_phage	41.7	6.9e-05
WP_004201117.1|785602_786463_+	replication protein	NA	K7PGT1	Enterobacteria_phage	53.3	1.0e-59
WP_004201118.1|786459_787308_+	ATP-binding protein	NA	K7PLU3	Enterobacteria_phage	60.1	5.1e-88
WP_004218528.1|787304_787607_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004196831.1|787662_787908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004218530.1|788115_789144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004243011.1|789253_789532_+	hypothetical protein	NA	NA	NA	NA	NA
789213:789228	attR	AACGAGCAAAAAAATG	NA	NA	NA	NA
WP_004218531.1|789664_790132_+	recombination protein NinB	NA	Q8VNP6	Enterobacteria_phage	45.8	3.4e-33
WP_004243010.1|790112_790280_+	NinE family protein	NA	K7P7K0	Enterobacteria_phage	62.5	4.6e-09
WP_004218532.1|790276_790945_+	metallophosphoesterase	NA	K7P6H8	Enterobacteria_phage	78.7	1.4e-104
WP_004218533.1|790937_791576_+	recombination protein NinG	NA	H6WRY9	Salmonella_phage	69.8	3.2e-74
WP_004218534.1|791572_791713_+	YlcG family protein	NA	NA	NA	NA	NA
WP_004232548.1|791712_792402_+	antiterminator-like protein	NA	I6PDF8	Cronobacter_phage	53.1	2.1e-55
WP_022644626.1|792627_793674_+|transposase	IS481-like element ISKpn28 family transposase	transposase	A0A0M3LR35	Mannheimia_phage	21.9	1.3e-05
WP_024940884.1|794152_794452_+|holin	phage holin family protein	holin	A0A286N2Q5	Klebsiella_phage	100.0	4.5e-47
WP_004218565.1|794448_794988_+	glycoside hydrolase family 108 protein	NA	A0A286N2Q6	Klebsiella_phage	98.9	3.3e-101
WP_062955100.1|794984_795272_+	hypothetical protein	NA	A0A286N2Q7	Klebsiella_phage	95.4	4.4e-36
WP_001067855.1|795308_796013_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 5
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	1349519	1360406	5536506		Escherichia_phage(87.5%)	9	NA	NA
WP_004151613.1|1349519_1352627_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
WP_004151612.1|1352681_1353947_+	MFS transporter	NA	NA	NA	NA	NA
WP_001620097.1|1353977_1355066_-	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
WP_002904006.1|1355152_1355413_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	3.5e-40
WP_004176269.1|1355710_1356571_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|1356591_1357353_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_004151610.1|1357613_1358516_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.3	7.7e-159
WP_004151609.1|1358527_1359793_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.5	6.6e-233
WP_002210516.1|1359785_1360406_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 6
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	1554448	1628451	5536506	transposase,plate,holin,terminase,integrase	uncultured_Caudovirales_phage(32.69%)	85	1619564:1619578	1625573:1625587
WP_002902268.1|1554448_1555534_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_004151598.1|1555497_1557252_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004151599.1|1558923_1562349_-	type VI secretion protein VasK	NA	NA	NA	NA	NA
WP_002902254.1|1562332_1563472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002902252.1|1563468_1563726_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_004151601.1|1563770_1566188_-	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
WP_002902180.1|1566175_1566706_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA	NA
WP_002902178.1|1566773_1567304_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA	NA
WP_002902176.1|1567372_1567903_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA	NA
WP_002902174.1|1567970_1568501_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA	NA
WP_002902172.1|1568569_1569100_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA	NA
WP_002902169.1|1569163_1569943_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
WP_004228410.1|1569943_1572313_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	33.8	9.1e-18
WP_002902163.1|1572314_1574969_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.4	2.5e-96
WP_002902160.1|1575233_1575725_-	type VI secretion system effector Hcp	NA	NA	NA	NA	NA
WP_004151602.1|1575729_1577436_-	OmpA family protein	NA	NA	NA	NA	NA
WP_004151603.1|1577432_1578122_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_004218490.1|1578118_1579462_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002902148.1|1579471_1581016_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002902144.1|1581058_1581550_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000019473.1|1582019_1583000_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
WP_002902136.1|1583595_1583844_+	DinI-like family protein	NA	S5MQI1	Escherichia_phage	70.4	1.4e-25
WP_002902133.1|1584066_1584351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002902131.1|1584455_1584665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002902128.1|1584661_1585393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004218487.1|1585403_1586132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152577.1|1588482_1588680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152576.1|1588679_1589546_-	hypothetical protein	NA	A0A2H4IYR0	uncultured_Caudovirales_phage	64.5	1.9e-34
WP_073547068.1|1589545_1590319_-	DUF2612 domain-containing protein	NA	A0A2H4J1A9	uncultured_Caudovirales_phage	54.1	3.1e-76
WP_004152574.1|1590315_1591512_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	72.9	3.9e-158
WP_004152573.1|1591511_1591865_-	hypothetical protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	80.3	2.3e-50
WP_004152572.1|1591866_1592520_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.5	1.0e-59
WP_004152571.1|1592573_1593140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004199301.1|1593182_1593365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152570.1|1593414_1593756_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	46.6	1.8e-23
WP_004152569.1|1593755_1594778_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	54.2	9.2e-100
WP_004217362.1|1594780_1595008_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	56.0	4.6e-20
WP_004152567.1|1595083_1595683_-	hypothetical protein	NA	A0A2H4J1B3	uncultured_Caudovirales_phage	57.6	9.9e-54
WP_004152566.1|1595682_1597686_-	lytic transglycosylase domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	63.6	1.2e-247
WP_004152565.1|1597675_1597828_-	hypothetical protein	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	88.0	7.6e-19
WP_004152564.1|1597863_1598289_-	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	63.4	2.6e-40
WP_004199809.1|1598292_1598733_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	80.1	3.3e-62
WP_004152177.1|1598743_1599889_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	76.9	6.3e-166
WP_004152176.1|1599892_1600333_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	51.7	1.6e-40
WP_001116156.1|1600427_1600814_-	hypothetical protein	NA	A0A2H4J1A4	uncultured_Caudovirales_phage	78.2	1.1e-48
WP_000834982.1|1600813_1601320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073547069.1|1601316_1601655_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	63.0	1.5e-19
WP_085955245.1|1601594_1602787_-|transposase	IS3-like element ISKpn18 family transposase	transposase	U5P429	Shigella_phage	43.5	3.5e-50
WP_000725700.1|1603010_1603292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001132269.1|1603331_1604273_-	DUF2184 domain-containing protein	NA	A0A2H4J191	uncultured_Caudovirales_phage	77.1	1.7e-137
WP_000528476.1|1604284_1604779_-	hypothetical protein	NA	A0A2H4JHM9	uncultured_Caudovirales_phage	62.7	4.2e-50
WP_004199270.1|1604782_1605985_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	54.1	2.6e-106
WP_004152174.1|1606036_1606585_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.3	3.0e-49
WP_004152173.1|1606640_1608092_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	68.8	3.8e-192
WP_004152172.1|1608329_1609730_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	9.4e-188
WP_004218030.1|1609680_1610169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152170.1|1610534_1610855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004153952.1|1611089_1611479_-	lipase chaperone	NA	A0A192Y6H8	Salmonella_phage	49.2	9.4e-21
WP_004152169.1|1611475_1612006_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	77.1	2.7e-79
WP_004146526.1|1612008_1612257_-|holin	class II holin family protein	holin	NA	NA	NA	NA
WP_004152167.1|1612662_1613445_-	antitermination protein	NA	F1C595	Cronobacter_phage	76.8	7.2e-113
WP_004198239.1|1613441_1613918_-	hypothetical protein	NA	A0A286N2Q1	Klebsiella_phage	100.0	1.8e-90
WP_004198233.1|1613914_1614877_-	toprim domain-containing protein	NA	A0A286N2Q0	Klebsiella_phage	99.4	4.8e-183
WP_004198228.1|1614878_1616537_-	DEAD/DEAH box helicase	NA	A0A286N2P9	Klebsiella_phage	96.0	0.0e+00
WP_004152162.1|1617113_1617335_-	helix-turn-helix transcriptional regulator	NA	A0A286S2C1	Klebsiella_phage	100.0	3.0e-32
WP_004152161.1|1617432_1618101_+	LexA family transcriptional regulator	NA	A0A286S2B2	Klebsiella_phage	99.5	2.4e-125
WP_004152160.1|1618271_1618586_+	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	100.0	1.0e-49
WP_004152159.1|1618578_1618767_+	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	100.0	4.6e-26
WP_004152158.1|1618936_1619302_+	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	99.2	6.9e-58
WP_004152157.1|1619294_1619549_+	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	97.6	3.1e-41
WP_004177208.1|1619520_1619739_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	98.6	6.6e-32
1619564:1619578	attL	AGGCGCTGCAGGTCC	NA	NA	NA	NA
WP_004152156.1|1619735_1620161_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	77.9	3.5e-53
WP_004152155.1|1620157_1620352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004152154.1|1620348_1621176_+	hypothetical protein	NA	Q8W654	Enterobacteria_phage	84.0	5.5e-111
WP_004152153.1|1621280_1621799_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	98.8	1.7e-94
WP_004154298.1|1621804_1622515_+	Rha family transcriptional regulator	NA	A0A286S260	Klebsiella_phage	88.3	2.1e-111
WP_004152151.1|1622504_1622729_+	hypothetical protein	NA	A0A286S2B3	Klebsiella_phage	89.2	3.1e-29
WP_004152150.1|1622725_1622938_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	98.6	3.4e-33
WP_014343018.1|1623180_1623414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004198245.1|1623486_1623633_+	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	70.8	2.9e-15
WP_004152148.1|1623592_1623835_+	hypothetical protein	NA	A0A0M4RTZ2	Salmonella_phage	73.8	2.2e-20
WP_004152147.1|1623815_1624997_-|integrase	site-specific integrase	integrase	A0A0M4QX09	Salmonella_phage	84.2	5.6e-202
WP_016197745.1|1625193_1625742_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
1625573:1625587	attR	GGACCTGCAGCGCCT	NA	NA	NA	NA
WP_004152145.1|1625940_1627473_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	30.0	1.1e-21
WP_004152144.1|1627689_1628451_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	2.4e-20
>prophage 7
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	1661384	1669013	5536506	transposase	Salmonella_phage(33.33%)	6	NA	NA
WP_002901815.1|1661384_1662056_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.6	4.5e-79
WP_071531199.1|1662242_1663070_+	FRG domain-containing protein	NA	A0A1S6KZX9	Salmonella_phage	30.2	8.4e-19
WP_002901813.1|1663145_1664411_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	82.7	9.6e-208
WP_002901812.1|1664412_1664832_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	57.5	1.4e-35
WP_004178082.1|1664911_1666399_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_001067855.1|1668308_1669013_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 8
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	2104266	2120012	5536506		Escherichia_phage(33.33%)	15	NA	NA
WP_062955125.1|2104266_2105598_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	6.9e-15
WP_062955124.1|2105587_2106421_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_073547075.1|2106449_2107280_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015958693.1|2107366_2107921_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.6	1.9e-51
WP_048996045.1|2107935_2108826_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	3.7e-28
WP_063002077.1|2108857_2109727_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.0	5.7e-111
WP_073547076.1|2109740_2110805_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.0	2.6e-105
WP_062955151.1|2111644_2112649_+	NAD-dependent epimerase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	29.2	4.0e-31
WP_016947628.1|2113049_2113169_+	small membrane protein	NA	NA	NA	NA	NA
WP_000704907.1|2113597_2114764_-	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	54.7	7.0e-112
WP_004175260.1|2114943_2115498_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.6	1.9e-51
WP_048996045.1|2115512_2116403_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	3.7e-28
WP_062956182.1|2116434_2117304_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.4	3.4e-111
WP_062955056.1|2117317_2118382_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.7	4.4e-105
WP_062955058.1|2118605_2120012_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.7	3.6e-38
>prophage 9
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	2160747	2167653	5536506	tRNA	Bacillus_phage(33.33%)	6	NA	NA
WP_062955084.1|2160747_2162226_+	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
WP_004175198.1|2162222_2162945_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
WP_004144192.1|2163263_2164625_+|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	94.8	1.8e-207
WP_004151134.1|2164867_2165764_+	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
WP_004899467.1|2166005_2166779_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
WP_004175147.1|2166789_2167653_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
>prophage 10
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	2468782	2551673	5536506	tRNA,protease,transposase,holin,terminase,integrase,tail	Salmonella_phage(33.33%)	84	2474424:2474441	2550662:2550679
WP_004152006.1|2468782_2470786_-|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
WP_002913800.1|2470795_2471671_-	neutral zinc metallopeptidase	NA	NA	NA	NA	NA
WP_002913801.1|2471790_2472504_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A127KMU1	Cyanophage	35.7	1.1e-38
WP_002913802.1|2472719_2473754_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_002913803.1|2473770_2474649_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
2474424:2474441	attL	CAGCGATAACCGGAATAC	NA	NA	NA	NA
WP_002913804.1|2474802_2475369_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA	NA
WP_002913805.1|2475372_2475843_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_002913806.1|2475904_2476966_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_004221267.1|2477020_2477137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002913807.1|2477188_2478652_+|protease	beta-barrel assembly-enhancing protease	protease	NA	NA	NA	NA
WP_002913810.1|2478661_2479021_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA	NA
WP_002913812.1|2479148_2480060_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	58.8	3.5e-74
WP_020947395.1|2480056_2480758_-	DnaA inactivator Hda	NA	NA	NA	NA	NA
WP_002913824.1|2480856_2482143_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	38.1	1.9e-65
WP_002913827.1|2482238_2482865_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_002913829.1|2483082_2484516_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002913833.1|2484525_2485419_-	ROK family protein	NA	NA	NA	NA	NA
WP_002913836.1|2485682_2486720_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	8.2e-72
WP_004152007.1|2486716_2487358_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	41.1	1.2e-28
WP_002913838.1|2487538_2489599_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_002913839.1|2489602_2491135_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_002913841.1|2491188_2493417_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA	NA
WP_004174861.1|2493787_2493961_+	DUF2633 family protein	NA	G9L6F2	Escherichia_phage	78.8	1.4e-16
WP_004221278.1|2494057_2494969_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002913847.1|2495042_2496275_+	MFS transporter	NA	NA	NA	NA	NA
WP_004162150.1|2496568_2497747_+	anaerobic sulfatase maturase	NA	NA	NA	NA	NA
WP_004152009.1|2497730_2499599_+	sulfatase-like hydrolase/transferase	NA	A0A2P0VMN7	Tetraselmis_virus	22.6	2.6e-07
WP_062955008.1|2499785_2500286_-	DUF2514 domain-containing protein	NA	Q858E9	Salmonella_phage	76.9	1.3e-59
WP_062955009.1|2500282_2500912_-	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	76.9	1.8e-90
WP_023339240.1|2500901_2501207_-|holin	phage holin family protein	holin	A0A193GYK3	Enterobacter_phage	81.4	2.7e-39
WP_062955010.1|2501193_2501598_-	hypothetical protein	NA	T1SA79	Salmonella_phage	81.1	8.7e-54
WP_077265603.1|2501684_2503001_-	right-handed parallel beta-helix repeat-containing protein	NA	A0A0K2FI18	Enterobacter_phage	32.3	2.3e-34
WP_000019473.1|2504725_2505706_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
WP_073547080.1|2507440_2508421_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.5	1.5e-184
WP_153233543.1|2508402_2509668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062955131.1|2509708_2509972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062955133.1|2512799_2513096_+	hypothetical protein	NA	T1SA06	Salmonella_phage	63.9	6.9e-24
WP_062955135.1|2513572_2516329_-	hypothetical protein	NA	Q858F8	Salmonella_phage	95.4	0.0e+00
WP_062955136.1|2516328_2518239_-	hypothetical protein	NA	Q858F9	Salmonella_phage	82.7	5.4e-287
WP_062955137.1|2518238_2520773_-	hypothetical protein	NA	Q858G0	Salmonella_phage	84.1	0.0e+00
WP_032447858.1|2520783_2521323_-	hypothetical protein	NA	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	80.0	8.0e-71
WP_004152438.1|2521322_2521787_-	hypothetical protein	NA	Q858G2	Salmonella_phage	81.2	1.5e-70
WP_062955138.1|2521786_2524264_-	hypothetical protein	NA	Q858G3	Salmonella_phage	84.4	0.0e+00
WP_062955139.1|2524263_2524869_-	hypothetical protein	NA	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	77.0	4.0e-87
WP_004152441.1|2524868_2525192_-	hypothetical protein	NA	G9L6C8	Escherichia_phage	85.0	5.3e-46
WP_062955141.1|2525242_2525584_-	hypothetical protein	NA	G9L6C7	Escherichia_phage	70.8	2.4e-36
WP_020953461.1|2525594_2526032_-	hypothetical protein	NA	A0A193GYT9	Enterobacter_phage	91.7	1.3e-66
WP_004200546.1|2526085_2527072_-	hypothetical protein	NA	A0A193GZ49	Enterobacter_phage	94.2	2.5e-179
WP_032441397.1|2527086_2527767_-	peptidase	NA	G9L6C4	Escherichia_phage	84.0	6.1e-76
WP_004152446.1|2527769_2528066_-	hypothetical protein	NA	T1SBI9	Salmonella_phage	70.4	1.2e-33
WP_032441398.1|2528062_2529745_-|tail	tail protein	tail	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	84.4	1.5e-264
WP_004141368.1|2529759_2529966_-	hypothetical protein	NA	T1SA67	Salmonella_phage	88.2	4.8e-08
WP_004200550.1|2530719_2531091_+	hypothetical protein	NA	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	91.9	3.7e-59
WP_062955142.1|2531134_2532610_-	hypothetical protein	NA	Q858H3	Salmonella_phage	93.1	6.4e-280
WP_032441400.1|2532606_2533191_-|terminase	terminase small subunit	terminase	T1SBI8	Salmonella_phage	88.6	2.2e-90
WP_032418540.1|2533268_2533526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004178082.1|2533926_2535414_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_023339258.1|2535510_2535849_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	80.0	1.8e-44
WP_032441458.1|2535841_2536045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050491799.1|2536044_2536665_-	hypothetical protein	NA	Q1MVF7	Enterobacteria_phage	40.7	1.0e-29
WP_029602865.1|2536661_2536955_-	hypothetical protein	NA	Q6UAT9	Klebsiella_phage	86.6	2.7e-44
WP_072200041.1|2536954_2537422_-	hypothetical protein	NA	A0A2R2Z312	Escherichia_phage	51.7	1.3e-37
WP_032441401.1|2537715_2538360_-	hypothetical protein	NA	Q1MVG0	Enterobacteria_phage	79.3	8.0e-110
WP_032441402.1|2538356_2538548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062955107.1|2538531_2538942_-	hypothetical protein	NA	A0A2P1MXC5	Escherichia_phage	45.1	4.3e-16
WP_073547081.1|2539134_2539482_-	DUF1064 domain-containing protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	81.7	7.2e-49
WP_032418532.1|2539601_2540387_-	replication protein	NA	A0A193GYX1	Enterobacter_phage	87.7	3.7e-133
WP_004207253.1|2540383_2541151_-	hypothetical protein	NA	A0A193GZ86	Enterobacter_phage	91.4	8.9e-140
WP_004152537.1|2541150_2541360_-	hypothetical protein	NA	A0A193GYW4	Enterobacter_phage	78.3	1.8e-26
WP_004152538.1|2541506_2541740_-	hypothetical protein	NA	T1SAR5	Salmonella_phage	66.2	9.2e-24
WP_004144290.1|2541894_2542476_+	helix-turn-helix transcriptional regulator	NA	Q858D7	Salmonella_phage	64.3	7.1e-65
WP_004164037.1|2542696_2542846_+	hypothetical protein	NA	G9L6A5	Escherichia_phage	84.2	7.9e-13
WP_004164029.1|2542842_2543142_+	hypothetical protein	NA	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	54.5	2.1e-20
WP_062955106.1|2543138_2543960_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A193GYK2	Enterobacter_phage	80.2	1.8e-130
WP_062955105.1|2543956_2544838_+	recombinase RecT	NA	T1SBJ5	Salmonella_phage	84.3	8.9e-136
WP_062955104.1|2544886_2545135_+	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	76.8	4.9e-31
WP_009485475.1|2545244_2545538_+	PerC family transcriptional regulator	NA	T1S9J5	Salmonella_phage	71.1	4.0e-32
WP_048264082.1|2545530_2545689_+	DUF1317 family protein	NA	T1SAR0	Salmonella_phage	78.8	1.1e-17
WP_062955103.1|2545685_2546348_+	hypothetical protein	NA	A0A059VF56	Pseudomonas_phage	46.6	1.2e-47
WP_004197356.1|2546344_2546938_+	MT-A70 family protein	NA	T1SA14	Salmonella_phage	91.9	6.3e-109
WP_063002073.1|2546934_2547177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062955102.1|2547119_2548370_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9TCT6	Enterobacter_phage	84.4	5.8e-205
WP_004151979.1|2548561_2550139_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
WP_004151980.1|2550206_2551673_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.7	1.2e-87
2550662:2550679	attR	CAGCGATAACCGGAATAC	NA	NA	NA	NA
>prophage 11
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	2623023	2705533	5536506	tRNA,transposase,capsid,plate,terminase,lysis,head,portal,tail,integrase	Salmonella_phage(69.23%)	89	2678901:2678917	2705860:2705876
WP_002914079.1|2623023_2623761_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_002914082.1|2623892_2625224_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	31.9	6.2e-48
WP_002914084.1|2625269_2625653_-	autonomous glycyl radical cofactor GrcA	NA	A0A193GZ98	Escherichia_phage	79.3	4.0e-32
WP_002914088.1|2625966_2626656_+	uracil-DNA glycosylase	NA	A0A077BCN4	Equid_alphaherpesvirus	53.0	1.3e-57
WP_002914089.1|2626713_2627799_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_002914091.1|2628002_2628428_+	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	40.2	6.0e-13
WP_002914092.1|2628497_2629196_+|tRNA	tRNA-uridine aminocarboxypropyltransferase	tRNA	NA	NA	NA	NA
WP_004188841.1|2629230_2631882_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_002914094.1|2632002_2633358_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002914095.1|2633399_2633723_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_002914097.1|2633726_2635025_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.5	3.1e-44
WP_004150973.1|2640990_2643564_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.4	6.9e-128
WP_002914109.1|2643693_2644425_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_002914110.1|2644421_2645402_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_004145664.1|2645533_2646271_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_002914111.1|2646541_2646877_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_100250063.1|2646983_2647031_+	pheA operon leader peptide PheL	NA	NA	NA	NA	NA
WP_004150975.1|2647131_2648292_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_002914112.1|2648288_2649161_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_002914113.1|2649223_2650345_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_002914114.1|2650354_2651425_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.5	1.8e-90
WP_004174804.1|2651767_2652277_+	YfiR family protein	NA	NA	NA	NA	NA
WP_002914116.1|2652269_2653493_+	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_002914117.1|2653506_2653989_+	OmpA family protein	NA	NA	NA	NA	NA
WP_002914118.1|2653997_2655368_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_002914119.1|2655424_2655883_-	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
WP_002914145.1|2656002_2656350_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002914147.1|2656389_2657157_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_004150977.1|2657188_2657737_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002914149.1|2657755_2658004_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002914152.1|2658263_2659628_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002914153.1|2659791_2660583_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_004149392.1|2660602_2661889_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002914155.1|2662008_2662599_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002914158.1|2662723_2663602_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_002914159.1|2663688_2665350_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002914160.1|2665497_2665839_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_002914161.1|2665905_2666196_-	RnfH family protein	NA	NA	NA	NA	NA
WP_004188817.1|2666185_2666662_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_002914164.1|2666772_2667255_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	2.3e-29
WP_004150980.1|2667858_2668236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150981.1|2668263_2668482_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	72.2	1.9e-26
WP_004150982.1|2668548_2669643_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	83.6	2.4e-170
WP_004150983.1|2669639_2670125_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.1	5.2e-61
WP_004150984.1|2670121_2672752_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	41.9	8.9e-115
WP_002896220.1|2672744_2672864_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_004150985.1|2672878_2673178_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	78.0	8.2e-33
WP_004150986.1|2673230_2673746_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	84.2	1.4e-80
WP_004150987.1|2673755_2674928_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	91.5	3.4e-207
WP_004150988.1|2675076_2676150_-|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	53.6	6.6e-40
WP_004200602.1|2676201_2677320_-	hypothetical protein	NA	A0A248XD67	Klebsiella_phage	38.0	4.4e-55
WP_004150990.1|2677329_2679279_-	CotH kinase family protein	NA	Q6QI97	Burkholderia_phage	38.9	1.0e-06
2678901:2678917	attL	CCAGCTGCTGGCGCAGG	NA	NA	NA	NA
WP_004152935.1|2679280_2679952_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	58.9	3.2e-61
WP_004150992.1|2679944_2680853_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	68.9	1.9e-109
WP_004150993.1|2680839_2681202_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.6	8.4e-48
WP_004150994.1|2681198_2681771_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	70.8	1.4e-76
WP_004150995.1|2681865_2682732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150996.1|2682754_2683201_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	72.3	2.5e-54
WP_004150997.1|2683193_2683616_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	83.2	8.2e-63
WP_072093160.1|2683578_2683737_-	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	75.0	9.0e-15
WP_004150998.1|2683711_2684140_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	82.5	7.1e-54
WP_004150999.1|2684136_2684520_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	45.4	1.9e-18
WP_004151000.1|2684524_2685034_-	lysozyme	NA	E5G6N1	Salmonella_phage	85.2	1.6e-81
WP_004134639.1|2685014_2685230_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	88.7	6.1e-30
WP_004151001.1|2685233_2685437_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	89.6	9.8e-30
WP_004151002.1|2685436_2685901_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	85.7	1.5e-73
WP_004134644.1|2685996_2686650_-|terminase	terminase endonuclease subunit	terminase	A0A1S6KZX1	Salmonella_phage	80.0	1.9e-90
WP_004151003.1|2686653_2687706_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	91.0	6.8e-175
WP_004151004.1|2687722_2688556_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	77.6	4.4e-100
WP_019405037.1|2688696_2690460_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	91.8	0.0e+00
WP_004151006.1|2690459_2691503_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	85.6	3.1e-172
WP_024940854.1|2691559_2691829_-	hypothetical protein	NA	D2IZW1	Enterococcus_phage	41.3	1.4e-15
WP_004151007.1|2692350_2693352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004151008.1|2693351_2694431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004151009.1|2694417_2695101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004151010.1|2695196_2695430_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	96.1	2.0e-34
WP_004151011.1|2695441_2695630_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	90.3	2.2e-23
WP_004178082.1|2695737_2697225_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_004151012.1|2697702_2700087_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	87.9	0.0e+00
WP_004151013.1|2700083_2700935_-	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	75.4	2.2e-115
WP_004151014.1|2700931_2701159_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	92.0	5.1e-35
WP_004151016.1|2701158_2701392_-	DUF2732 family protein	NA	A0A1S6L021	Salmonella_phage	90.9	6.0e-31
WP_004144796.1|2701459_2701798_-	DUF5347 domain-containing protein	NA	A0A218M4I7	Erwinia_phage	58.0	6.2e-29
WP_004151017.1|2701761_2701962_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	68.8	4.5e-19
WP_004151018.1|2701969_2702479_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	85.8	1.1e-77
WP_001397669.1|2702511_2702754_-	hypothetical protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	4.0e-38
WP_004151019.1|2702876_2703506_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	54.5	1.4e-61
WP_062955148.1|2703508_2704507_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	94.5	2.2e-183
WP_000019473.1|2704552_2705533_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	99.1	8.9e-185
2705860:2705876	attR	CCTGCGCCAGCAGCTGG	NA	NA	NA	NA
>prophage 12
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	3410817	3459660	5536506	tRNA,protease,capsid,terminase,head,portal,tail	uncultured_Caudovirales_phage(68.75%)	55	NA	NA
WP_002918465.1|3410817_3411312_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.8	1.5e-26
WP_002918467.1|3411315_3411954_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_000829818.1|3412265_3412658_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002918559.1|3412673_3413102_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004144945.1|3413367_3414495_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_002918565.1|3414685_3415084_+	DUF1043 family protein	NA	NA	NA	NA	NA
WP_062954970.1|3415257_3416625_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.3	6.0e-22
WP_002918568.1|3416712_3417771_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA	NA
WP_002918570.1|3417907_3418846_-	malate dehydrogenase	NA	NA	NA	NA	NA
WP_002918625.1|3419260_3419731_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_002918626.1|3420106_3420370_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA	NA
WP_002918627.1|3420468_3420735_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA	NA
WP_002918629.1|3420785_3421061_-	barstar family protein	NA	NA	NA	NA	NA
WP_002918632.1|3421140_3423108_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
WP_002918639.1|3423113_3424046_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
WP_002918640.1|3424053_3424257_-	AaeX family protein	NA	NA	NA	NA	NA
WP_002918641.1|3424388_3425318_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
WP_002918642.1|3425353_3426799_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_004150952.1|3426887_3430685_-	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA	NA
WP_002918644.1|3430722_3432192_-	ribonuclease G	NA	NA	NA	NA	NA
WP_002918646.1|3432194_3432776_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002918648.1|3432783_3433272_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_004149974.1|3433271_3434264_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_002918653.1|3434334_3435378_-	rod shape-determining protein MreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
WP_002918686.1|3435683_3437624_-	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
WP_002918687.1|3437703_3437895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002918688.1|3438123_3439125_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_002918689.1|3439124_3439733_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_002918732.1|3439956_3440409_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_002918736.1|3440431_3440899_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_002918738.1|3440909_3442259_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_002918740.1|3442369_3442612_+	YhdT family protein	NA	NA	NA	NA	NA
WP_002918742.1|3442601_3444053_+	sodium/pantothenate symporter	NA	NA	NA	NA	NA
WP_002918745.1|3444064_3444946_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_004144972.1|3445303_3446269_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_000462905.1|3446293_3446590_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA	NA
WP_004150954.1|3446743_3446935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150955.1|3446937_3448599_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	98.0	0.0e+00
WP_000113647.1|3448582_3448939_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	99.2	5.5e-60
WP_004150957.1|3449069_3449222_-	hypothetical protein	NA	A0A2H4JCY9	uncultured_Caudovirales_phage	88.0	2.4e-17
WP_004150959.1|3449214_3449658_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	91.8	2.8e-77
WP_001547824.1|3449657_3449957_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	80.8	3.4e-39
WP_004150961.1|3449953_3450289_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	57.8	3.7e-26
WP_004150962.1|3450285_3451527_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	96.5	1.0e-230
WP_001547826.1|3451528_3452089_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	95.7	1.2e-98
WP_001549743.1|3452140_3453307_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	95.9	9.8e-207
WP_004150963.1|3453570_3454083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150964.1|3454131_3454467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150965.1|3454809_3456945_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	62.4	3.4e-205
WP_001549749.1|3456944_3457310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150966.1|3457306_3457675_-	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	81.1	3.7e-51
WP_004150967.1|3457671_3457986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549752.1|3457978_3458167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106918304.1|3458159_3458429_-	host cell division inhibitor Icd-like protein	NA	A0A2H4JGW3	uncultured_Caudovirales_phage	94.4	2.4e-44
WP_004150969.1|3458880_3459660_-	phage antirepressor KilAC domain-containing protein	NA	Q8HA02	Enterobacteria_phage	51.5	6.2e-40
>prophage 13
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	4643652	4653177	5536506	transposase	Enterobacteria_phage(85.71%)	11	NA	NA
WP_000019445.1|4643652_4644633_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
WP_004152200.1|4644995_4645532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152201.1|4645532_4646612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152202.1|4647352_4647919_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
WP_004152203.1|4647936_4648182_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
WP_004152204.1|4648178_4648916_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	59.4	1.1e-70
WP_000556592.1|4649476_4649743_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.0e-30
WP_004153681.1|4649739_4650288_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	69.4	1.1e-30
WP_004152205.1|4650284_4650512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004152206.1|4650508_4650829_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_004152207.1|4650843_4653177_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
>prophage 14
NZ_CP018454	Klebsiella pneumoniae strain SWU01 chromosome, complete genome	5536506	5122624	5134277	5536506	integrase	Enterobacteria_phage(70.0%)	13	5110758:5110772	5133814:5133828
5110758:5110772	attL	AGCGCGGAGAGATTG	NA	NA	NA	NA
WP_002889890.1|5122624_5124958_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	82.2	0.0e+00
WP_002889897.1|5124969_5125290_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_002889911.1|5125286_5125514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024940872.1|5125510_5126068_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.8e-33
WP_002889915.1|5126064_5126331_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
WP_062956184.1|5126872_5127610_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	59.4	1.9e-70
WP_004152203.1|5127606_5127852_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
WP_004152202.1|5127869_5128436_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
WP_004152979.1|5129003_5129429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152029.1|5129428_5130379_-	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	27.1	1.2e-13
WP_002889938.1|5130366_5131557_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	62.7	6.4e-145
WP_002889940.1|5131909_5133163_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	44.9	8.9e-89
WP_004144574.1|5133173_5134277_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	4.8e-62
5133814:5133828	attR	AGCGCGGAGAGATTG	NA	NA	NA	NA
>prophage 1
NZ_CP018455	Klebsiella pneumoniae strain SWU01 plasmid unnamed, complete sequence	162552	1603	43980	162552	protease,integrase,transposase	Escherichia_phage(47.62%)	41	11223:11237	39440:39454
WP_013362812.1|1603_2572_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	100.0	1.6e-186
WP_013188475.1|2606_3482_-	class A extended-spectrum beta-lactamase CTX-M-65	NA	A0A1B0VBP7	Salmonella_phage	98.9	6.8e-152
WP_001067855.1|3992_4697_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001398199.1|6007_6409_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_000557619.1|6341_6599_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_072134990.1|6691_7024_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001067855.1|7267_7972_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|8385_9090_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002903955.1|10723_11626_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
11223:11237	attL	CCGGCGGCCGCTTTC	NA	NA	NA	NA
WP_002210513.1|11887_12649_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_002904004.1|12669_13530_-	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_001138014.1|13770_16737_-|transposase	Tn3-like element TnAs1 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	100.0	0.0e+00
WP_001161490.1|16740_17301_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	100.0	1.1e-59
WP_013213990.1|18843_19122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013213989.1|19232_19658_+	antirestriction protein	NA	A0A2D0W8Z5	Bordetella_virus	37.3	5.3e-17
WP_013213988.1|19785_19941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013213987.1|19986_20283_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_004199234.1|21517_22399_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	NA	A0A1B0VBP7	Salmonella_phage	52.2	2.2e-73
WP_000361404.1|23677_24700_-	helicase UvrD	NA	NA	NA	NA	NA
WP_004206609.1|24684_26247_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_001044770.1|26320_26737_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_001261282.1|26733_26964_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014343465.1|26920_27382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011977810.1|27542_28487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011977811.1|28523_28916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214008.1|28973_29495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011977813.1|29540_29744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011977814.1|29773_30778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214009.1|30961_31741_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.0	5.4e-52
WP_013214010.1|31786_32044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014343462.1|32172_32286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004118283.1|32821_33688_+	replication initiation protein	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
WP_011977818.1|34797_36003_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	5.3e-163
WP_011977819.1|36002_36977_+	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	53.8	1.4e-86
WP_013214011.1|37058_38330_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	63.7	7.5e-152
WP_001568036.1|38329_38761_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	2.1e-29
WP_004178082.1|39167_40655_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
39440:39454	attR	GAAAGCGGCCGCCGG	NA	NA	NA	NA
WP_004152353.1|40903_41875_+	mediator of plasmid stability	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
WP_013214012.1|41877_42549_+	plasmid partitioning/stability family protein	NA	NA	NA	NA	NA
WP_001568040.1|42611_42842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001568041.1|43278_43980_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.2	1.6e-26
>prophage 2
NZ_CP018455	Klebsiella pneumoniae strain SWU01 plasmid unnamed, complete sequence	162552	57323	103618	162552	transposase	Escherichia_phage(25.0%)	58	NA	NA
WP_013609528.1|57323_58397_-|transposase	IS481-like element ISKpn28 family transposase	transposase	NA	NA	NA	NA
WP_014343509.1|58468_58627_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
WP_040245921.1|59319_59592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040245917.1|59588_59939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343505.1|59953_60271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343501.1|61111_61468_+	hypothetical protein	NA	A0A248SL90	Klebsiella_phage	58.1	7.5e-25
WP_014343500.1|61528_61741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343499.1|61751_61976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343498.1|62056_62377_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	39.5	1.5e-08
WP_004152721.1|62366_62645_+	helix-turn-helix transcriptional regulator	NA	O64356	Escherichia_phage	39.4	2.5e-07
WP_004152492.1|63581_64403_+	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	40.1	1.2e-44
WP_013214015.1|64435_64765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014343495.1|64797_65283_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_001067855.1|66112_66817_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_008324180.1|66942_67317_-	hypothetical protein	NA	A0A248SL90	Klebsiella_phage	62.7	2.2e-27
WP_015493069.1|67942_68302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008324183.1|68363_68687_-	hypothetical protein	NA	I3UM57	Rhodobacter_phage	38.1	6.0e-13
WP_008324185.1|68683_69412_-	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
WP_008324186.1|69408_69840_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
WP_015493071.1|71962_72193_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
WP_015493072.1|73170_73425_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	46.2	5.2e-12
WP_015493073.1|73617_73809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015493074.1|73851_74358_-	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	31.8	4.8e-09
WP_015493075.1|74762_75542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015493076.1|75595_76015_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_015493077.1|76025_76247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211749.1|76246_76924_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	1.6e-28
WP_015493079.1|77282_77954_+	SOS response-associated peptidase family protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.7	5.1e-83
WP_015493080.1|78133_78556_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.5	3.1e-30
WP_015493081.1|78555_79827_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	63.0	6.1e-154
WP_016479949.1|79962_80934_-	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	68.9	1.4e-113
WP_015493083.1|80930_82136_-	AAA family ATPase	NA	Q1MVJ3	Enterobacteria_phage	89.2	1.1e-205
WP_022652286.1|82498_83131_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	31.9	2.5e-07
WP_040219232.1|83184_83385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015493085.1|83531_84482_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.6	6.6e-76
WP_015493086.1|84478_85090_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_015493087.1|85086_85482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000019445.1|85995_86976_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
WP_042934582.1|87627_88185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|88653_89358_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001044210.1|89363_89504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001446887.1|89989_90727_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000743213.1|90723_90948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000954592.1|91069_91246_+	DUF4102 domain-containing protein	NA	T1S9J3	Salmonella_phage	68.6	1.0e-06
WP_000427619.1|91427_92432_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_042863651.1|92510_95477_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.8	0.0e+00
WP_001067855.1|95597_96302_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000205770.1|96546_97293_+	conjugal transfer pilus acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.9	4.2e-09
WP_000139328.1|97347_97908_+	fertility inhibition protein FinO	NA	NA	NA	NA	NA
WP_015059022.1|98039_98240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032083981.1|98625_99225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001736714.1|99388_99619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001312851.1|99923_100073_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
WP_000083837.1|100356_100605_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_001375168.1|100849_100924_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_032495102.1|100916_101774_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_187417362.1|102712_102877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|102913_103618_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
