The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	84147	113568	2092148	transposase,bacteriocin	Streptococcus_phage(89.66%)	36	NA	NA
WP_000420682.1|84147_84462_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|84477_84864_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813494.1|84892_86278_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	99.8	1.9e-265
WP_000879507.1|86280_86433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001814870.1|86455_87718_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	99.0	3.1e-230
WP_029645760.1|87662_87875_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	78.7	1.5e-12
WP_001814874.1|87923_88007_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038795.1|88131_88869_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
WP_000085862.1|88873_89005_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_000019067.1|89125_90373_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
WP_001009056.1|90552_90774_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|90890_91388_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|91362_91869_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|91852_94300_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_001814875.1|94302_96480_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	98.6	0.0e+00
WP_000769868.1|96476_97478_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|97474_98407_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_012386611.1|98681_98768_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691729.1|98783_100703_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.3	0.0e+00
WP_001813542.1|101066_101312_+	hypothetical protein	NA	A0A1B0RXA7	Streptococcus_phage	98.8	2.6e-37
WP_000806926.1|101308_101644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000567222.1|101656_102025_+	hypothetical protein	NA	A0A1B0RXA8	Streptococcus_phage	97.5	1.1e-58
WP_001072467.1|102011_102311_+	hypothetical protein	NA	A0A1B0RX98	Streptococcus_phage	96.0	1.8e-48
WP_000420313.1|102428_103892_-	ABC-F type ribosomal protection protein Msr(D)	NA	A0A1B0RXA0	Streptococcus_phage	97.3	3.7e-251
WP_000417519.1|104011_105229_-	macrolide efflux MFS transporter Mef(A)	NA	A0A2K5B2B5	Erysipelothrix_phage	90.6	5.1e-198
WP_000873143.1|105614_105785_-	hypothetical protein	NA	A0A1X9I6E4	Streptococcus_phage	98.2	3.7e-22
WP_001860868.1|106306_106498_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	69.4	5.4e-14
WP_001227347.1|106557_106911_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_013670292.1|107115_107187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000804885.1|107415_107838_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|107834_108065_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_001845478.1|108290_108542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814511.1|108525_108729_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|108810_110028_+|transposase	transposase	transposase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000732395.1|110918_112934_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571425.1|112935_113568_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	2.8e-22
>prophage 3
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	505964	547241	2092148	transposase,tRNA,bacteriocin	Streptococcus_phage(50.0%)	45	NA	NA
WP_001821265.1|505964_507311_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	4.5e-78
WP_001257240.1|508382_508580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000808434.1|508816_509881_-	membrane protein	NA	NA	NA	NA	NA
WP_001229057.1|509943_510855_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_000198675.1|510847_511441_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000273854.1|511427_511754_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000744897.1|511892_513059_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_000096202.1|513116_514274_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_001035700.1|514315_516166_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.5	7.6e-28
WP_000200898.1|516515_517148_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|517169_518042_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|518050_518722_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836450.1|518963_519551_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.7	1.6e-27
WP_001189285.1|519602_519923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000227119.1|520374_520623_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723961.1|520677_522786_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|522782_523424_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|523630_524437_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_099516442.1|524402_524873_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001189278.1|525162_525483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424418.1|526241_526610_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_050139485.1|526631_526817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001268157.1|527008_527872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000915345.1|528337_528676_+	peptidase C39	NA	NA	NA	NA	NA
WP_000074494.1|528772_529150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000973716.1|529303_529516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424467.1|529931_530294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000356083.1|530274_530520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001814711.1|530676_531735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792250.1|532050_533028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424474.1|533404_533779_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511668.1|533785_533968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000619753.1|533986_534889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013193366.1|534911_535298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000539711.1|535264_536023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000680086.1|536501_536699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073077614.1|537097_537397_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	54.1	1.2e-15
WP_000058768.1|537415_537661_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	53.4	1.3e-15
WP_001035384.1|537946_540121_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282969.1|540521_541643_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000220953.1|542248_544162_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331974.1|544356_546036_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639589.1|546037_546271_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_001844323.1|546897_547095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000974047.1|547088_547241_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	592236	600062	2092148		Streptococcus_phage(75.0%)	12	NA	NA
WP_001107589.1|592236_592950_-	helix-turn-helix domain-containing protein	NA	Q708R9	Streptococcus_phage	51.9	2.0e-16
WP_000090006.1|593102_593333_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	3.7e-09
WP_000424665.1|593348_593975_+	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.8	2.1e-30
WP_073506752.1|594346_594799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000174331.1|594795_594996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001003774.1|594997_595213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000058832.1|595209_595551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000492137.1|595543_595825_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	67.8	7.9e-30
WP_000158192.1|595959_596826_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	75.0	8.2e-126
WP_000434359.1|596878_598348_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	35.0	2.3e-64
WP_000173130.1|598951_599482_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	48.7	2.8e-36
WP_000811078.1|599552_600062_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	53.9	5.8e-47
>prophage 5
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	730616	787546	2092148	protease,transposase,holin	Streptococcus_phage(28.57%)	46	NA	NA
WP_001816270.1|730616_731963_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	3.4e-78
WP_073506754.1|733519_734587_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001030858.1|734857_735436_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_000838781.1|735462_735789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000712332.1|735799_736342_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_001082471.1|736357_736552_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	5.5e-06
WP_000159399.1|736717_737668_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000840840.1|737680_737998_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_046782588.1|738001_740254_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_023356938.1|740255_741236_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_023356941.1|741570_743676_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.0e-116
WP_000032550.1|743970_744453_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743620.1|744547_746032_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156769.1|746184_747792_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_033604964.1|747956_748124_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_000091077.1|749211_750657_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	60.1	3.6e-134
WP_000565348.1|750658_751390_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
WP_000664166.1|751398_752091_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	55.9	4.3e-61
WP_001142521.1|752100_752784_+	polysaccharide biosynthesis tyrosine autokinase CpsD	NA	A0A1X9I5D6	Streptococcus_phage	60.9	1.3e-70
WP_000343581.1|752799_754167_+	sugar transferase	NA	NA	NA	NA	NA
WP_001205625.1|754170_754914_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_001076786.1|754910_755735_+|holin	LPS cholinephosphotransferase	holin	A0A1V0SD50	Indivirus	38.7	1.8e-05
WP_000458863.1|755736_756615_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000120848.1|756615_757953_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_001092842.1|757975_759397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723326.1|759460_760549_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.3	1.0e-27
WP_000676118.1|760587_761457_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.2	9.2e-101
WP_000131463.1|761457_762054_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	32.8	3.0e-10
WP_000141500.1|762063_763113_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.2	8.3e-72
WP_000600898.1|763178_764030_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	4.3e-26
WP_000842571.1|765498_767481_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032472.1|767781_773085_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001041857.1|773250_775410_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248773.1|775406_776003_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	1.5e-17
WP_000179553.1|776069_776597_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000200644.1|776666_777008_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711398.1|777493_778651_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039290.1|778663_780058_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158792.1|780133_781558_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.7e-41
WP_000518011.1|781569_782259_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000698035.1|782356_783319_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000771128.1|783337_784336_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_000765677.1|784453_785686_-	MFS transporter	NA	NA	NA	NA	NA
WP_001822134.1|785728_786316_-	lanthionine synthetase	NA	NA	NA	NA	NA
WP_001816235.1|786215_786554_-	lantibiotic-modifying protein	NA	NA	NA	NA	NA
WP_073506756.1|787216_787546_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	867935	930822	2092148	protease,transposase,tRNA,bacteriocin	Planktothrix_phage(10.0%)	56	NA	NA
WP_001810089.1|867935_868106_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000628994.1|868759_869983_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_073078459.1|870146_871472_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_023356947.1|871419_873360_+	DUF4838 domain-containing protein	NA	NA	NA	NA	NA
WP_000836781.1|873527_873872_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000429402.1|873881_875294_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
WP_000359753.1|875362_877042_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001809506.1|877167_878607_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|878610_879960_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|880147_880996_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403169.1|881010_881559_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|881565_881823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656522.1|881924_883607_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	3.4e-19
WP_001148103.1|883591_884422_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181373.1|884614_885118_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|885570_886134_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001842683.1|886123_886774_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867296.1|886800_887190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333653.1|887194_887644_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001808720.1|887756_888359_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|888748_890356_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026631.1|890914_892546_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795202.1|892834_897775_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|897864_899061_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|899196_899724_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|899800_900157_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122904.1|900193_901540_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|901635_901755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410535.1|901719_901869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073506758.1|902300_903620_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000651177.1|903676_904474_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000240090.1|904484_905093_+	type I restriction endonuclease	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
WP_000029054.1|906580_908044_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229085.1|908056_910390_-	DEAD/DEAH box helicase	NA	A0A097BY72	Enterococcus_phage	28.9	2.0e-25
WP_013193390.1|910762_910963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001088687.1|910997_911507_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255769.1|911670_912705_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|912731_913256_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|913735_915559_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000115730.1|915571_915925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066299.1|916129_917266_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.0	1.2e-23
WP_001808905.1|917587_917782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|917943_918231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|918240_918651_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|918718_919450_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653752.1|919446_920496_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132575.1|920663_920993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682122.1|921268_921607_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219126.1|921611_922349_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000275284.1|922361_923702_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_001816270.1|923941_925288_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	3.4e-78
WP_000358814.1|925454_925610_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069099.1|925666_927028_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_001093269.1|928571_928820_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000483697.1|928835_929045_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000497530.1|930246_930822_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	1161075	1168081	2092148		Streptococcus_phage(42.86%)	10	NA	NA
WP_000405832.1|1161075_1161570_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_001170347.1|1161569_1162100_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000889093.1|1162093_1162450_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001103449.1|1162607_1163408_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000590990.1|1163407_1164151_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	2.8e-29
WP_001206969.1|1164216_1164453_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000272311.1|1164518_1165430_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	2.9e-89
WP_000855734.1|1165467_1166196_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_001272941.1|1166240_1166852_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000930003.1|1167364_1168081_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	30.9	2.1e-26
>prophage 8
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	1591008	1601404	2092148		Streptococcus_phage(70.0%)	11	NA	NA
WP_001166874.1|1591008_1591887_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	1.7e-115
WP_000358228.1|1591889_1592207_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_000806706.1|1592246_1593137_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
WP_000033363.1|1593133_1593772_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	2.2e-75
WP_000689706.1|1593991_1594789_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
WP_000254684.1|1594792_1596055_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
WP_001844793.1|1596064_1597195_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000728257.1|1597274_1599158_-	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	23.7	9.5e-10
WP_073506767.1|1599160_1600048_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.3e-09
WP_000745389.1|1600037_1600499_-	signal peptidase II	NA	NA	NA	NA	NA
WP_001025704.1|1600495_1601404_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
>prophage 9
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	1824003	1830762	2092148	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_000081004.1|1824003_1824972_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.8e-65
WP_000011306.1|1825005_1825917_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231086.1|1825913_1826891_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163033.1|1826887_1827778_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140412.1|1827829_1828210_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1828220_1828808_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_001814787.1|1828816_1830049_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.7	4.2e-131
WP_000442260.1|1830085_1830256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162475.1|1830255_1830762_-	dihydrofolate reductase	NA	A0A1B2IAU3	Erwinia_phage	31.1	7.4e-18
>prophage 10
NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2092148	2084072	2091445	2092148		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
WP_001814725.1|2084072_2084792_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.2	4.7e-34
WP_001108392.1|2084788_2084941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013193490.1|2085222_2086197_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	1.1e-57
WP_001193665.1|2086186_2087143_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|2087139_2087892_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858251.1|2087987_2088953_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821615.1|2089177_2089420_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
WP_001222228.1|2089419_2090142_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|2090128_2090698_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351913.1|2090716_2091445_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	4.1e-09
