assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001902295.1_ASM190229v1	NZ_CP018335	Clostridium kluyveri strain JZZ chromosome, complete genome	1	1573776-1573880	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	Orphan	TTTAAGATTACTAAAAATTTAACAAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	NA|159aa|up_4|NZ_CP018335.1_1568529_1569006_-,NA	NA|254aa|up_9|NZ_CP018335.1_1564514_1565276_+	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|201aa|up_8|NZ_CP018335.1_1565259_1565862_+	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|155aa|up_7|NZ_CP018335.1_1565978_1566443_-	TIGR02874, conserved_hypothetical_protein, sporulation protein YtfJ	NA|185aa|up_6|NZ_CP018335.1_1566646_1567201_-	pfam11167, DUF2953, Protein of unknown function (DUF2953)	NA|395aa|up_5|NZ_CP018335.1_1567336_1568521_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|159aa|up_4|NZ_CP018335.1_1568529_1569006_-	NA	NA|357aa|up_3|NZ_CP018335.1_1569118_1570189_-	pfam10114, PocR, Sensory domain found in PocR	NA|138aa|up_2|NZ_CP018335.1_1570724_1571138_+	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|453aa|up_1|NZ_CP018335.1_1571374_1572733_+	TIGR01945, Electron_transport_complex_subunit_C, electron transport complex, RnfABCDGE type, C subunit	NA|331aa|up_0|NZ_CP018335.1_1572752_1573745_+	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family	NA|214aa|down_0|NZ_CP018335.1_1574384_1575026_+	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|193aa|down_1|NZ_CP018335.1_1575027_1575606_+	COG4657, RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]	NA|286aa|down_2|NZ_CP018335.1_1575621_1576479_+	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|173aa|down_3|NZ_CP018335.1_1576555_1577074_-	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I	NA|219aa|down_4|NZ_CP018335.1_1577198_1577855_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|156aa|down_5|NZ_CP018335.1_1577950_1578418_-	cd15786, CPF_1278_like, Uncharacterized protein conserved in Clostridia	NA|275aa|down_6|NZ_CP018335.1_1578528_1579353_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|477aa|down_7|NZ_CP018335.1_1579775_1581206_+	PRK13570, PRK13570, anthranilate synthase component I; Provisional	NA|195aa|down_8|NZ_CP018335.1_1581206_1581791_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|336aa|down_9|NZ_CP018335.1_1581780_1582788_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional
GCF_001902295.1_ASM190229v1	NZ_CP018335	Clostridium kluyveri strain JZZ chromosome, complete genome	2	2065983-2066882	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6,c2c9_V-U4,cas2,cas1,cas4	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	Unclear	GTTTCAATTCCTCATAGGTAATCTAAAATC,GTTTCAATTCCTCATAGGTAATCTAAAATC,GTTTCAATTCCTCATAGGTAATCTAAAATC	30,30,30	1	1	2066079-2066114	NZ_CP018336.1_42546-42511	NA:NA:NA	13,12,11	13	Unclear	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	NA|368aa|up_0|NZ_CP018335.1_2062895_2063999_-,NA|324aa|down_7|NZ_CP018335.1_2075401_2076373_-	NA|722aa|up_9|NZ_CP018335.1_2050150_2052316_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|305aa|up_8|NZ_CP018335.1_2052653_2053568_+	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|393aa|up_7|NZ_CP018335.1_2053653_2054832_-	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis	NA|404aa|up_6|NZ_CP018335.1_2054931_2056143_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|433aa|up_5|NZ_CP018335.1_2056513_2057812_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|483aa|up_4|NZ_CP018335.1_2057893_2059342_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|215aa|up_3|NZ_CP018335.1_2059432_2060077_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|up_2|NZ_CP018335.1_2060102_2060816_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|252aa|up_1|NZ_CP018335.1_2061916_2062672_+	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family	NA|368aa|up_0|NZ_CP018335.1_2062895_2063999_-	NA	NA|253aa|down_0|NZ_CP018335.1_2067050_2067809_-	COG3177, COG3177, Fic family protein [Function unknown]	cas6|225aa|down_1|NZ_CP018335.1_2067887_2068562_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	c2c9_V-U4|389aa|down_2|NZ_CP018335.1_2068743_2069910_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|down_3|NZ_CP018335.1_2069902_2070511_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas2|88aa|down_4|NZ_CP018335.1_2071104_2071368_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_5|NZ_CP018335.1_2071370_2072363_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_6|NZ_CP018335.1_2072383_2072875_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|324aa|down_7|NZ_CP018335.1_2075401_2076373_-	NA	NA|109aa|down_8|NZ_CP018335.1_2076377_2076704_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|417aa|down_9|NZ_CP018335.1_2076994_2078245_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_001902295.1_ASM190229v1	NZ_CP018335	Clostridium kluyveri strain JZZ chromosome, complete genome	3	2073041-2075074	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6,c2c9_V-U4,cas2,cas1,cas4	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	Unclear	GTTTCAATTCCTCATAGGTAATCTAAAATC,GTTTCAATTCCTCATAGGTANTCTAAAATC,GTTTCAATTCCTCATAGGTAGTCTAAAATC	30,30,30	0	0	NA	NA	NA:NA:NA	30,30,29	30	Unclear	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	NA|368aa|up_7|NZ_CP018335.1_2062895_2063999_-,NA|324aa|down_0|NZ_CP018335.1_2075401_2076373_-,NA|128aa|down_7|NZ_CP018335.1_2083322_2083706_-	NA|238aa|up_9|NZ_CP018335.1_2060102_2060816_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|252aa|up_8|NZ_CP018335.1_2061916_2062672_+	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family	NA|368aa|up_7|NZ_CP018335.1_2062895_2063999_-	NA	NA|253aa|up_6|NZ_CP018335.1_2067050_2067809_-	COG3177, COG3177, Fic family protein [Function unknown]	cas6|225aa|up_5|NZ_CP018335.1_2067887_2068562_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	c2c9_V-U4|389aa|up_4|NZ_CP018335.1_2068743_2069910_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|up_3|NZ_CP018335.1_2069902_2070511_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas2|88aa|up_2|NZ_CP018335.1_2071104_2071368_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_1|NZ_CP018335.1_2071370_2072363_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|up_0|NZ_CP018335.1_2072383_2072875_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|324aa|down_0|NZ_CP018335.1_2075401_2076373_-	NA	NA|109aa|down_1|NZ_CP018335.1_2076377_2076704_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|417aa|down_2|NZ_CP018335.1_2076994_2078245_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|232aa|down_3|NZ_CP018335.1_2078251_2078947_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|847aa|down_4|NZ_CP018335.1_2079014_2081555_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|225aa|down_5|NZ_CP018335.1_2081579_2082254_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|208aa|down_6|NZ_CP018335.1_2082666_2083290_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|128aa|down_7|NZ_CP018335.1_2083322_2083706_-	NA	NA|360aa|down_8|NZ_CP018335.1_2083702_2084782_-	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|232aa|down_9|NZ_CP018335.1_2085069_2085765_-	pfam11738, DUF3298, Protein of unknown function (DUF3298)
GCF_001902295.1_ASM190229v1	NZ_CP018335	Clostridium kluyveri strain JZZ chromosome, complete genome	4	2659751-2660433	3,3,4	CRT,PILER-CR,CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	Orphan	ATTTAAATACAATCCTTGTTAAGGTTCAAC,ATTTAAATACAATCCTTGTTAAGGTTCAAC,ATTTAAATACAATCCTTGTTAAGGTTCAAC	30,30,30	1	1	2659847-2659883	NZ_CP018335.1_1787273-1787309	III-B:III-B:III-B	10,9,9	10	Orphan	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	NA|55aa|up_6|NZ_CP018335.1_2650270_2650435_+,NA|325aa|up_5|NZ_CP018335.1_2650622_2651597_-,NA|171aa|up_2|NZ_CP018335.1_2654454_2654967_-,NA	NA|222aa|up_9|NZ_CP018335.1_2647756_2648422_+	smart00257, LysM, Lysin motif	NA|232aa|up_8|NZ_CP018335.1_2648896_2649592_-	pfam13490, zf-HC2, Putative zinc-finger	NA|157aa|up_7|NZ_CP018335.1_2649588_2650059_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|55aa|up_6|NZ_CP018335.1_2650270_2650435_+	NA	NA|325aa|up_5|NZ_CP018335.1_2650622_2651597_-	NA	NA|404aa|up_4|NZ_CP018335.1_2651649_2652861_-	cd17524, RMtype1_S_EcoUTORF5051P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli UTI89 S subunit (S	NA|498aa|up_3|NZ_CP018335.1_2652862_2654356_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|171aa|up_2|NZ_CP018335.1_2654454_2654967_-	NA	NA|327aa|up_1|NZ_CP018335.1_2654959_2655940_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|1103aa|up_0|NZ_CP018335.1_2656055_2659364_-	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|151aa|down_0|NZ_CP018335.1_2660952_2661405_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|301aa|down_1|NZ_CP018335.1_2661429_2662332_+	TIGR04054, rSAM_NirJ1, putative heme d1 biosynthesis radical SAM protein NirJ1	NA|228aa|down_2|NZ_CP018335.1_2664045_2664729_-	cd06561, AlkD_like, A new structural DNA glycosylase	NA|279aa|down_3|NZ_CP018335.1_2664808_2665645_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|270aa|down_4|NZ_CP018335.1_2666843_2667653_-	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain	NA|582aa|down_5|NZ_CP018335.1_2667687_2669433_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_6|NZ_CP018335.1_2669410_2671192_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|326aa|down_7|NZ_CP018335.1_2671359_2672337_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|595aa|down_8|NZ_CP018335.1_2672872_2674657_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|301aa|down_9|NZ_CP018335.1_2675533_2676436_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_001902295.1_ASM190229v1	NZ_CP018335	Clostridium kluyveri strain JZZ chromosome, complete genome	5	4116265-4116555	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	Orphan	CATTTAAATACAAATCTTGTTAAGGTTCAAC,CATTTAAATACAAATCTTGTTAAGGTTCAACT,TCATTTAAATACAAATCTTGTTAAGGTTCAAC	31,32,32	0	0	NA	NA	III-B:III-B:III-B	4,4,3	4	Orphan	cas3,WYL,DEDDh,csa3,cas6,c2c9_V-U4,cas2,cas1,cas4,Cas14u_CAS-V,RT,PD-DExK,cas14j	NA|128aa|up_0|NZ_CP018335.1_4115361_4115745_-,NA|380aa|down_1|NZ_CP018335.1_4118846_4119986_+	NA|479aa|up_9|NZ_CP018335.1_4106036_4107473_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_8|NZ_CP018335.1_4107557_4108214_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|224aa|up_7|NZ_CP018335.1_4108350_4109022_+	pfam02589, LUD_dom, LUD domain	NA|454aa|up_6|NZ_CP018335.1_4109482_4110844_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|162aa|up_5|NZ_CP018335.1_4111627_4112113_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|290aa|up_4|NZ_CP018335.1_4112176_4113046_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|326aa|up_3|NZ_CP018335.1_4112999_4113977_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|121aa|up_2|NZ_CP018335.1_4114597_4114960_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|65aa|up_1|NZ_CP018335.1_4115044_4115239_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|128aa|up_0|NZ_CP018335.1_4115361_4115745_-	NA	NA|417aa|down_0|NZ_CP018335.1_4117512_4118762_-	pfam00665, rve, Integrase core domain	NA|380aa|down_1|NZ_CP018335.1_4118846_4119986_+	NA	NA|107aa|down_2|NZ_CP018335.1_4120544_4120865_-	pfam02956, TT_ORF1, TT viral orf 1	NA|402aa|down_3|NZ_CP018335.1_4122502_4123708_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|287aa|down_4|NZ_CP018335.1_4123922_4124783_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|967aa|down_5|NZ_CP018335.1_4125549_4128450_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|129aa|down_6|NZ_CP018335.1_4128529_4128916_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|257aa|down_7|NZ_CP018335.1_4129279_4130050_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|253aa|down_8|NZ_CP018335.1_4130050_4130809_-	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein	NA|117aa|down_9|NZ_CP018335.1_4130824_4131175_-	pfam06304, DUF1048, Protein of unknown function (DUF1048)
