assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901445.1_ASM190144v1	NZ_CP010242	Escherichia coli strain S56 chromosome, complete genome	1	124876-126002	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	10,18,18,10	18	TypeI-E	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|254aa|up_9|NZ_CP010242.1_116688_117450_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010242.1_117430_118480_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010242.1_118476_118956_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010242.1_118955_119666_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010242.1_119684_119996_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010242.1_120189_120513_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010242.1_120562_121168_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010242.1_121167_122595_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010242.1_122596_123505_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010242.1_123756_124794_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010242.1_126098_126392_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010242.1_126391_127312_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010242.1_127308_127959_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010242.1_127940_128687_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010242.1_128697_129753_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010242.1_129764_130301_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010242.1_130297_131860_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010242.1_131957_134657_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010242.1_134851_135004_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010242.1_135268_136003_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001901445.1_ASM190144v1	NZ_CP010242	Escherichia coli strain S56 chromosome, complete genome	2	141502-142872	2,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,10	22	TypeI-E	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|121aa|down_2|NZ_CP010242.1_146389_146752_+	cas5|249aa|up_9|NZ_CP010242.1_127940_128687_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|up_8|NZ_CP010242.1_128697_129753_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_7|NZ_CP010242.1_129764_130301_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|up_6|NZ_CP010242.1_130297_131860_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_5|NZ_CP010242.1_131957_134657_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_4|NZ_CP010242.1_134851_135004_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_3|NZ_CP010242.1_135268_136003_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NZ_CP010242.1_136076_137789_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NZ_CP010242.1_137788_139588_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_0|NZ_CP010242.1_139903_140269_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NZ_CP010242.1_143211_143883_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP010242.1_144055_144658_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|121aa|down_2|NZ_CP010242.1_146389_146752_+	NA	NA|433aa|down_3|NZ_CP010242.1_146807_148106_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010242.1_148193_149831_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010242.1_150058_150850_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010242.1_150920_151256_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010242.1_151255_151504_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010242.1_151581_153816_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010242.1_153863_155165_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_001901445.1_ASM190144v1	NZ_CP010242	Escherichia coli strain S56 chromosome, complete genome	3	1973086-1973217	4	PILER-CR	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|305aa|up_9|NZ_CP010242.1_1958196_1959111_+	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|274aa|up_8|NZ_CP010242.1_1959277_1960099_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_7|NZ_CP010242.1_1960554_1961703_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_6|NZ_CP010242.1_1961720_1964942_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_5|NZ_CP010242.1_1965202_1965598_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_4|NZ_CP010242.1_1965683_1966274_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_3|NZ_CP010242.1_1966279_1967065_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|406aa|up_2|NZ_CP010242.1_1968800_1970018_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP010242.1_1970146_1971289_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP010242.1_1971319_1972834_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP010242.1_1973307_1974078_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP010242.1_1974092_1975034_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP010242.1_1975084_1976371_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP010242.1_1976367_1976655_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_CP010242.1_1976713_1978045_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_CP010242.1_1978152_1978683_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_CP010242.1_1978675_1980538_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_CP010242.1_1980730_1981210_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|down_8|NZ_CP010242.1_1981287_1982130_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_9|NZ_CP010242.1_1982136_1982514_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_001901445.1_ASM190144v1	NZ_CP010242	Escherichia coli strain S56 chromosome, complete genome	4	2959827-2959975	3	CRISPRCasFinder	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|551aa|up_9|NZ_CP010242.1_2946236_2947889_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP010242.1_2948032_2948932_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP010242.1_2949426_2950122_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP010242.1_2950547_2952206_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP010242.1_2952202_2953159_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP010242.1_2953309_2954425_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP010242.1_2954421_2956368_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP010242.1_2956440_2956665_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP010242.1_2956987_2957308_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP010242.1_2957338_2959615_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP010242.1_2960358_2960577_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP010242.1_2960860_2961565_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP010242.1_2961606_2963328_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP010242.1_2963328_2965095_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP010242.1_2965217_2966183_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP010242.1_2966727_2967222_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1356aa|down_6|NZ_CP010242.1_2967356_2971424_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP010242.1_2971582_2972194_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP010242.1_2972204_2973548_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP010242.1_2973638_2974931_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_001901445.1_ASM190144v1	NZ_CP010242	Escherichia coli strain S56 chromosome, complete genome	5	4481405-4481489	4	CRISPRCasFinder	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	Orphan	TGGACAACTGTTGGACAACCGTTGGACAAT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA|71aa|up_6|NZ_CP010242.1_4477617_4477830_-,NA|75aa|down_3|NZ_CP010242.1_4483848_4484073_+,NA|99aa|down_4|NZ_CP010242.1_4484128_4484425_+,NA|103aa|down_7|NZ_CP010242.1_4485122_4485431_+	NA|63aa|up_9|NZ_CP010242.1_4476790_4476979_-	pfam06322, Phage_NinH, Phage NinH protein	NA|121aa|up_8|NZ_CP010242.1_4476975_4477338_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP010242.1_4477334_4477625_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|71aa|up_6|NZ_CP010242.1_4477617_4477830_-	NA	NA|59aa|up_5|NZ_CP010242.1_4477822_4477999_-	pfam05810, NinF, NinF protein	NA|118aa|up_4|NZ_CP010242.1_4477998_4478352_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|59aa|up_3|NZ_CP010242.1_4478354_4478531_-	pfam05322, NinE, NINE Protein	NA|176aa|up_2|NZ_CP010242.1_4478527_4479055_-	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|147aa|up_1|NZ_CP010242.1_4479051_4479492_-	pfam05772, NinB, NinB protein	NA|479aa|up_0|NZ_CP010242.1_4479568_4481005_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|99aa|down_0|NZ_CP010242.1_4482065_4482362_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|77aa|down_1|NZ_CP010242.1_4482483_4482714_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|236aa|down_2|NZ_CP010242.1_4482793_4483501_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|75aa|down_3|NZ_CP010242.1_4483848_4484073_+	NA	NA|99aa|down_4|NZ_CP010242.1_4484128_4484425_+	NA	NA|45aa|down_5|NZ_CP010242.1_4484766_4484901_+	pfam08134, cIII, cIII protein family	NA|51aa|down_6|NZ_CP010242.1_4484885_4485038_+	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|103aa|down_7|NZ_CP010242.1_4485122_4485431_+	NA	NA|304aa|down_8|NZ_CP010242.1_4485427_4486339_+	PRK09846, recT, recombination protein RecT	NA|161aa|down_9|NZ_CP010242.1_4486322_4486805_+	pfam05565, Sipho_Gp157, Siphovirus Gp157
GCF_001901445.1_ASM190144v1	NZ_CP010245	Escherichia coli strain S56 plasmid C, complete sequence	1	1141-1243	1	CRISPRCasFinder	no			Orphan	GGGGGCGTGACAGTTATTGCAGGGGTTCGTGACAGTTA	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT	NA|95aa|up_0|NZ_CP010245.1_507_792_+,NA|69aa|down_3|NZ_CP010245.1_5315_5522_-,NA|71aa|down_4|NZ_CP010245.1_5523_5736_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|95aa|up_0|NZ_CP010245.1_507_792_+	NA	NA|447aa|down_0|NZ_CP010245.1_1886_3227_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|284aa|down_1|NZ_CP010245.1_3608_4460_-	pfam06504, RepC, Replication protein C (RepC)	NA|280aa|down_2|NZ_CP010245.1_4446_5286_-	cd01125, repA, Hexameric Replicative Helicase RepA	NA|69aa|down_3|NZ_CP010245.1_5315_5522_-	NA	NA|71aa|down_4|NZ_CP010245.1_5523_5736_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
