assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901405.1_ASM190140v1	NZ_CP010238	Escherichia coli strain S50 chromosome, complete genome	1	867700-868093	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	NA,NA	NA|254aa|up_9|NZ_CP010238.1_859512_860274_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010238.1_860254_861304_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010238.1_861300_861780_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010238.1_861779_862490_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010238.1_862508_862820_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010238.1_863013_863337_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010238.1_863386_863992_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010238.1_863991_865419_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010238.1_865420_866329_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010238.1_866580_867618_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010238.1_868189_868483_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP010238.1_868479_869403_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010238.1_869399_870050_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010238.1_870031_870778_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010238.1_870788_871844_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010238.1_871855_872392_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010238.1_872388_873951_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010238.1_874048_876748_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010238.1_876941_877094_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010238.1_877358_878093_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001901405.1_ASM190140v1	NZ_CP010238	Escherichia coli strain S50 chromosome, complete genome	2	893792-894979	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	Unclear	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	NA,NA|121aa|down_3|NZ_CP010238.1_897719_898082_+	NA|121aa|up_9|NZ_CP010238.1_881996_882359_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP010238.1_882436_883708_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP010238.1_883698_883959_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP010238.1_883975_884551_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_5|NZ_CP010238.1_884698_885559_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP010238.1_885555_886335_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_3|NZ_CP010238.1_886312_887722_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_2|NZ_CP010238.1_887743_889198_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|426aa|up_1|NZ_CP010238.1_890370_891648_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010238.1_891674_893153_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010238.1_895318_895990_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP010238.1_896162_896765_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP010238.1_896778_897684_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP010238.1_897719_898082_+	NA	NA|433aa|down_4|NZ_CP010238.1_898137_899436_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP010238.1_899523_901161_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP010238.1_901388_902180_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP010238.1_902250_902586_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP010238.1_902585_902834_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP010238.1_902911_905146_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCF_001901405.1_ASM190140v1	NZ_CP010238	Escherichia coli strain S50 chromosome, complete genome	3	3502697-3502836	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATTCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	NA,NA|56aa|down_3|NZ_CP010238.1_3505625_3505793_-,NA|201aa|down_4|NZ_CP010238.1_3506035_3506638_+,NA|72aa|down_6|NZ_CP010238.1_3507168_3507384_-	NA|50aa|up_9|NZ_CP010238.1_3491676_3491826_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP010238.1_3491992_3492766_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP010238.1_3492765_3493455_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP010238.1_3493457_3494516_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP010238.1_3494516_3495335_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP010238.1_3495489_3496485_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP010238.1_3496525_3497479_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP010238.1_3497662_3498715_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP010238.1_3498790_3500224_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP010238.1_3500406_3502668_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP010238.1_3502901_3504185_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NZ_CP010238.1_3504319_3505390_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NZ_CP010238.1_3505367_3505586_-	pfam07825, Exc, Excisionase-like protein	NA|56aa|down_3|NZ_CP010238.1_3505625_3505793_-	NA	NA|201aa|down_4|NZ_CP010238.1_3506035_3506638_+	NA	NA|74aa|down_5|NZ_CP010238.1_3506848_3507070_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|72aa|down_6|NZ_CP010238.1_3507168_3507384_-	NA	NA|64aa|down_7|NZ_CP010238.1_3507460_3507652_-	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|61aa|down_8|NZ_CP010238.1_3507624_3507807_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|down_9|NZ_CP010238.1_3507803_3508484_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain
GCF_001901405.1_ASM190140v1	NZ_CP010238	Escherichia coli strain S50 chromosome, complete genome	4	3687666-3687814	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,WYL,DinG	NA,NA	NA|551aa|up_9|NZ_CP010238.1_3674113_3675766_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP010238.1_3675909_3676809_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP010238.1_3677265_3677961_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP010238.1_3678386_3680045_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP010238.1_3680041_3680998_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP010238.1_3681148_3682264_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP010238.1_3682260_3684207_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP010238.1_3684279_3684504_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP010238.1_3684826_3685147_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP010238.1_3685177_3687454_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP010238.1_3688197_3688416_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP010238.1_3688700_3689405_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP010238.1_3689446_3691168_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP010238.1_3691168_3692935_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP010238.1_3693057_3694023_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP010238.1_3694567_3695062_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1382aa|down_6|NZ_CP010238.1_3695196_3699342_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP010238.1_3699496_3700108_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP010238.1_3700118_3701462_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP010238.1_3701552_3702845_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
